Wall clock time and date at job start Tue Mar 31 2020 11:28:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17400 * 1
3 3 C 1.47200 * 179.97438 * 2 1
4 4 C 1.53007 * 109.47363 * 53.62000 * 3 2 1
5 5 N 1.46497 * 109.47204 * 179.97438 * 4 3 2
6 6 C 1.46493 * 120.00227 * 269.99918 * 5 4 3
7 7 C 1.53008 * 109.47166 * 270.00091 * 6 5 4
8 8 O 1.42896 * 109.46853 * 64.99754 * 7 6 5
9 9 C 1.42899 * 113.99801 * 180.02562 * 8 7 6
10 10 C 1.34779 * 119.99929 * 89.99937 * 5 4 3
11 11 O 1.21282 * 119.99913 * 359.97438 * 10 5 4
12 12 C 1.50694 * 120.00074 * 180.02562 * 10 5 4
13 13 C 1.50697 * 109.47339 * 179.97438 * 12 10 5
14 14 C 1.37641 * 120.13047 * 264.99854 * 13 12 10
15 15 C 1.38614 * 120.25108 * 179.97438 * 14 13 12
16 16 C 1.38651 * 120.49947 * 0.02948 * 15 14 13
17 17 C 1.37597 * 120.25407 * 0.02562 * 16 15 14
18 18 C 1.40702 * 120.12779 * 84.72570 * 13 12 10
19 19 C 1.41392 * 120.24484 * 359.97438 * 18 13 12
20 20 H 1.08008 * 119.99829 * 333.89019 * 19 18 13
21 21 C 1.39936 * 120.00157 * 153.88802 * 19 18 13
22 22 N 1.30823 * 120.00218 * 343.72133 * 21 19 18
23 23 Si 1.86806 * 120.00088 * 163.72365 * 21 19 18
24 24 H 1.48497 * 109.46918 * 60.00210 * 23 21 19
25 25 H 1.48502 * 109.47252 * 179.97438 * 23 21 19
26 26 H 1.48498 * 109.46900 * 300.00273 * 23 21 19
27 27 H 4.44652 * 5.63378 * 180.02562 * 4 1 2
28 28 H 1.08994 * 109.47552 * 293.61597 * 3 2 1
29 29 H 1.09005 * 109.46892 * 173.61360 * 3 2 1
30 30 H 1.08994 * 109.47116 * 59.99330 * 4 3 2
31 31 H 1.09005 * 109.46594 * 299.99543 * 4 3 2
32 32 H 1.09007 * 109.47072 * 29.99768 * 6 5 4
33 33 H 1.08999 * 109.47530 * 149.99880 * 6 5 4
34 34 H 1.08996 * 109.47031 * 184.99794 * 7 6 5
35 35 H 1.08998 * 109.46850 * 304.99771 * 7 6 5
36 36 H 1.08997 * 109.47546 * 300.00237 * 9 8 7
37 37 H 1.09003 * 109.46979 * 60.00227 * 9 8 7
38 38 H 1.09003 * 109.47341 * 179.97438 * 9 8 7
39 39 H 1.09001 * 109.47013 * 299.99658 * 12 10 5
40 40 H 1.09002 * 109.47501 * 59.99861 * 12 10 5
41 41 H 1.08005 * 119.87545 * 0.02562 * 14 13 12
42 42 H 1.08001 * 119.74551 * 179.97438 * 15 14 13
43 43 H 1.08005 * 119.87756 * 180.02562 * 16 15 14
44 44 H 1.07991 * 120.13234 * 179.97438 * 17 16 15
45 45 H 0.97001 * 120.00340 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 6 3.1565 -0.8547 -1.1614
5 7 4.6214 -0.8536 -1.1617
6 6 5.3530 0.1683 -1.9145
7 6 5.6081 -0.3318 -3.3379
8 8 4.3616 -0.4839 -4.0198
9 6 4.4880 -0.9497 -5.3649
10 6 5.2962 -1.7926 -0.4694
11 8 4.6906 -2.6384 0.1542
12 6 6.8032 -1.7911 -0.4692
13 6 7.3066 -2.9342 0.3740
14 6 7.6345 -2.7265 1.6945
15 6 8.0973 -3.7762 2.4725
16 6 8.2360 -5.0452 1.9315
17 6 7.9154 -5.2758 0.6135
18 6 7.4380 -4.2191 -0.1841
19 6 7.0983 -4.4457 -1.5378
20 1 6.3738 -3.8109 -2.0263
21 6 7.7007 -5.4925 -2.2445
22 7 8.7873 -6.0546 -1.7810
23 14 6.9534 -6.0873 -3.8500
24 1 6.9208 -4.9680 -4.8253
25 1 7.7751 -7.1965 -4.3975
26 1 5.5708 -6.5697 -3.6036
27 1 -1.0498 0.0000 -0.0004
28 1 3.0096 -0.4108 0.9415
29 1 3.0089 1.0222 -0.1143
30 1 2.7929 -0.4432 -2.1029
31 1 2.7936 -1.8762 -1.0471
32 1 4.7631 1.0842 -1.9515
33 1 6.3053 0.3690 -1.4238
34 1 6.2281 0.3892 -3.8706
35 1 6.1205 -1.2930 -3.2989
36 1 5.0849 -0.2419 -5.9400
37 1 4.9770 -1.9238 -5.3675
38 1 3.4983 -1.0391 -5.8129
39 1 7.1667 -1.9049 -1.4905
40 1 7.1656 -0.8492 -0.0574
41 1 7.5299 -1.7421 2.1264
42 1 8.3525 -3.6040 3.5077
43 1 8.5972 -5.8559 2.5470
44 1 8.0246 -6.2649 0.1940
45 1 9.2047 -6.7805 -2.2707
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000856390201.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:28:55
Heat of formation + Delta-G solvation = -30.510270 kcal
Electronic energy + Delta-G solvation = -26606.154146 eV
Core-core repulsion = 22975.222880 eV
Total energy + Delta-G solvation = -3630.931266 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.162 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.10870 -39.31428 -38.67179 -36.89644 -35.49819 -35.13723 -33.41518 -31.63576
-31.31755 -29.99478 -28.42275 -27.15091 -26.90512 -24.66872 -23.98575 -22.80805
-21.65325 -19.86022 -19.06972 -19.03067 -18.16187 -17.62068 -17.07587 -17.00190
-16.71038 -16.22864 -16.16547 -15.69304 -15.44491 -15.34466 -15.12647 -14.64406
-14.39742 -14.30058 -13.84959 -13.52809 -13.42805 -13.25067 -13.07002 -12.91632
-12.87539 -12.74225 -12.65688 -12.48956 -12.41893 -12.13103 -11.98566 -11.34786
-11.30478 -11.19502 -11.03643 -11.01777 -10.70229 -10.55911 -9.60638 -9.21138
-9.14366 -8.59614 -6.28874 0.99855 1.14386 1.31869 1.41551 1.51669
1.74221 1.86921 1.91864 2.17223 2.23135 2.78378 2.90937 3.57933
3.67477 3.93692 4.10696 4.20181 4.27247 4.30759 4.36501 4.40749
4.45844 4.49367 4.54218 4.61425 4.62900 4.69680 4.72487 4.78650
4.85237 4.89979 4.96772 5.05282 5.11095 5.16769 5.19670 5.38116
5.56224 5.68194 5.78453 6.04663 6.17531 6.20810 6.23179 6.43080
6.52706 6.70333 6.74862 6.99956 7.12566 7.40634 8.36531
Molecular weight = 315.16amu
Principal moments of inertia in cm(-1)
A = 0.010018 B = 0.005205 C = 0.004005
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2794.330327 B = 5378.156557 C = 6988.810358
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.219 4.219
3 C -0.019 4.019
4 C 0.133 3.867
5 N -0.609 5.609
6 C 0.108 3.892
7 C 0.034 3.966
8 O -0.405 6.405
9 C 0.028 3.972
10 C 0.516 3.484
11 O -0.574 6.574
12 C -0.066 4.066
13 C -0.187 4.187
14 C -0.091 4.091
15 C -0.241 4.241
16 C -0.118 4.118
17 C -0.194 4.194
18 C 0.097 3.903
19 C -0.481 4.481
20 H 0.066 0.934
21 C 0.040 3.960
22 N -0.825 5.825
23 Si 0.963 3.037
24 H -0.252 1.252
25 H -0.265 1.265
26 H -0.275 1.275
27 H 0.249 0.751
28 H 0.068 0.932
29 H 0.110 0.890
30 H 0.099 0.901
31 H 0.045 0.955
32 H 0.114 0.886
33 H 0.119 0.881
34 H 0.090 0.910
35 H 0.032 0.968
36 H 0.060 0.940
37 H 0.025 0.975
38 H 0.095 0.905
39 H 0.095 0.905
40 H 0.116 0.884
41 H 0.119 0.881
42 H 0.115 0.885
43 H 0.104 0.896
44 H 0.095 0.905
45 H 0.286 0.714
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.064 15.379 -5.939 17.936
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C -0.220 4.220
3 C -0.057 4.057
4 C 0.010 3.990
5 N -0.342 5.342
6 C -0.014 4.014
7 C -0.043 4.043
8 O -0.325 6.325
9 C -0.068 4.068
10 C 0.306 3.694
11 O -0.452 6.452
12 C -0.105 4.105
13 C -0.188 4.188
14 C -0.109 4.109
15 C -0.261 4.261
16 C -0.137 4.137
17 C -0.214 4.214
18 C 0.095 3.905
19 C -0.510 4.510
20 H 0.085 0.915
21 C -0.175 4.175
22 N -0.451 5.451
23 Si 0.785 3.215
24 H -0.176 1.176
25 H -0.189 1.189
26 H -0.200 1.200
27 H 0.265 0.735
28 H 0.086 0.914
29 H 0.128 0.872
30 H 0.117 0.883
31 H 0.064 0.936
32 H 0.132 0.868
33 H 0.137 0.863
34 H 0.108 0.892
35 H 0.051 0.949
36 H 0.079 0.921
37 H 0.044 0.956
38 H 0.113 0.887
39 H 0.113 0.887
40 H 0.134 0.866
41 H 0.136 0.864
42 H 0.133 0.867
43 H 0.122 0.878
44 H 0.113 0.887
45 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -7.341 14.797 -5.600 17.442
hybrid contribution -0.051 -1.204 -0.714 1.401
sum -7.393 13.593 -6.313 16.712
Atomic orbital electron populations
1.25708 0.96782 0.99801 0.99301 1.23332 0.95063 1.01654 1.01946
1.18981 0.85028 1.02220 0.99436 1.21181 0.79634 0.99534 0.98647
1.47980 1.06192 1.30364 1.49644 1.22008 0.99512 0.91019 0.88876
1.23233 0.86467 1.00582 0.94067 1.87812 1.30372 1.87524 1.26748
1.22841 1.03332 0.97936 0.82740 1.21252 0.90990 0.79675 0.77473
1.90663 1.71175 1.38705 1.44629 1.20339 0.89971 0.98447 1.01788
1.19575 1.10024 0.93919 0.95322 1.20743 0.98604 0.98248 0.93272
1.20720 1.11982 0.93701 0.99649 1.20944 1.00584 0.97039 0.95110
1.21300 1.07421 0.98976 0.93674 1.17712 0.88820 0.90814 0.93195
1.19525 1.21773 1.13507 0.96238 0.91538 1.26569 0.93503 0.94875
1.02524 1.69868 1.15133 1.20424 1.39693 0.85544 0.78838 0.79154
0.78001 1.17619 1.18867 1.20014 0.73474 0.91360 0.87156 0.88329
0.93640 0.86768 0.86300 0.89241 0.94919 0.92140 0.95605 0.88704
0.88742 0.86563 0.86355 0.86699 0.87808 0.88652 0.90386
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -4.27 19.25 74.32 1.43 -2.84 16
2 C -0.22 -5.63 13.34 31.13 0.42 -5.21 16
3 C -0.02 -0.48 6.03 28.79 0.17 -0.31 16
4 C 0.13 3.85 5.18 86.38 0.45 4.30 16
5 N -0.61 -17.83 2.44 -821.81 -2.00 -19.83 16
6 C 0.11 2.11 5.62 86.38 0.49 2.60 16
7 C 0.03 0.74 6.28 71.98 0.45 1.19 16
8 O -0.41 -9.84 9.53 -148.98 -1.42 -11.26 16
9 C 0.03 0.56 11.01 113.37 1.25 1.81 16
10 C 0.52 20.16 7.28 87.65 0.64 20.80 16
11 O -0.57 -28.68 15.61 -3.04 -0.05 -28.72 16
12 C -0.07 -2.49 3.73 29.10 0.11 -2.38 16
13 C -0.19 -8.97 4.43 -19.40 -0.09 -9.05 16
14 C -0.09 -4.06 9.66 22.22 0.21 -3.85 16
15 C -0.24 -11.04 10.05 22.46 0.23 -10.82 16
16 C -0.12 -5.91 10.02 22.22 0.22 -5.69 16
17 C -0.19 -10.89 8.69 22.73 0.20 -10.69 16
18 C 0.10 5.35 5.56 -21.29 -0.12 5.24 16
19 C -0.48 -26.26 8.14 23.46 0.19 -26.07 16
20 H 0.07 3.58 6.67 -2.91 -0.02 3.56 16
21 C 0.04 2.06 5.16 85.25 0.44 2.50 16
22 N -0.82 -44.05 10.96 21.82 0.24 -43.81 16
23 Si 0.96 39.70 29.59 68.60 2.03 41.73 16
24 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16
25 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16
26 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16
27 H 0.25 3.13 7.80 -4.43 -0.03 3.09 16
28 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16
29 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16
30 H 0.10 2.55 7.11 -2.39 -0.02 2.54 16
31 H 0.04 1.65 7.42 -2.38 -0.02 1.64 16
32 H 0.11 1.60 8.07 -2.38 -0.02 1.58 16
33 H 0.12 1.84 6.44 -2.39 -0.02 1.83 16
34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16
35 H 0.03 0.91 7.30 -2.39 -0.02 0.89 16
36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
37 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16
38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16
39 H 0.09 3.55 6.20 -2.39 -0.01 3.54 16
40 H 0.12 3.32 7.31 -2.39 -0.02 3.30 16
41 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16
42 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16
43 H 0.10 4.62 8.06 -2.91 -0.02 4.59 16
44 H 0.10 5.60 6.20 -2.92 -0.02 5.59 16
45 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16
Total: -1.00 -73.65 380.74 6.46 -67.19
By element:
Atomic # 1 Polarization: 32.20 SS G_CDS: 0.97 Total: 33.17 kcal
Atomic # 6 Polarization: -45.16 SS G_CDS: 6.69 Total: -38.47 kcal
Atomic # 7 Polarization: -61.88 SS G_CDS: -1.76 Total: -63.64 kcal
Atomic # 8 Polarization: -38.51 SS G_CDS: -1.47 Total: -39.98 kcal
Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal
Total: -73.65 6.46 -67.19 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000856390201.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.680 kcal
(2) G-P(sol) polarization free energy of solvation -73.652 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.971 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.461 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.191 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.510 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds