Wall clock time and date at job start Tue Mar 31 2020 11:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47363 * 53.62000 * 3 2 1 5 5 N 1.46497 * 109.47204 * 179.97438 * 4 3 2 6 6 C 1.46493 * 120.00227 * 269.99918 * 5 4 3 7 7 C 1.53008 * 109.47166 * 270.00091 * 6 5 4 8 8 O 1.42896 * 109.46853 * 64.99754 * 7 6 5 9 9 C 1.42899 * 113.99801 * 180.02562 * 8 7 6 10 10 C 1.34779 * 119.99929 * 89.99937 * 5 4 3 11 11 O 1.21282 * 119.99913 * 359.97438 * 10 5 4 12 12 C 1.50694 * 120.00074 * 180.02562 * 10 5 4 13 13 C 1.50697 * 109.47339 * 179.97438 * 12 10 5 14 14 C 1.37641 * 120.13047 * 264.99854 * 13 12 10 15 15 C 1.38614 * 120.25108 * 179.97438 * 14 13 12 16 16 C 1.38651 * 120.49947 * 0.02948 * 15 14 13 17 17 C 1.37597 * 120.25407 * 0.02562 * 16 15 14 18 18 C 1.40702 * 120.12779 * 84.72570 * 13 12 10 19 19 C 1.41392 * 120.24484 * 359.97438 * 18 13 12 20 20 H 1.08008 * 119.99829 * 333.89019 * 19 18 13 21 21 C 1.39936 * 120.00157 * 153.88802 * 19 18 13 22 22 N 1.30823 * 120.00218 * 343.72133 * 21 19 18 23 23 Si 1.86806 * 120.00088 * 163.72365 * 21 19 18 24 24 H 1.48497 * 109.46918 * 60.00210 * 23 21 19 25 25 H 1.48502 * 109.47252 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46900 * 300.00273 * 23 21 19 27 27 H 4.44652 * 5.63378 * 180.02562 * 4 1 2 28 28 H 1.08994 * 109.47552 * 293.61597 * 3 2 1 29 29 H 1.09005 * 109.46892 * 173.61360 * 3 2 1 30 30 H 1.08994 * 109.47116 * 59.99330 * 4 3 2 31 31 H 1.09005 * 109.46594 * 299.99543 * 4 3 2 32 32 H 1.09007 * 109.47072 * 29.99768 * 6 5 4 33 33 H 1.08999 * 109.47530 * 149.99880 * 6 5 4 34 34 H 1.08996 * 109.47031 * 184.99794 * 7 6 5 35 35 H 1.08998 * 109.46850 * 304.99771 * 7 6 5 36 36 H 1.08997 * 109.47546 * 300.00237 * 9 8 7 37 37 H 1.09003 * 109.46979 * 60.00227 * 9 8 7 38 38 H 1.09003 * 109.47341 * 179.97438 * 9 8 7 39 39 H 1.09001 * 109.47013 * 299.99658 * 12 10 5 40 40 H 1.09002 * 109.47501 * 59.99861 * 12 10 5 41 41 H 1.08005 * 119.87545 * 0.02562 * 14 13 12 42 42 H 1.08001 * 119.74551 * 179.97438 * 15 14 13 43 43 H 1.08005 * 119.87756 * 180.02562 * 16 15 14 44 44 H 1.07991 * 120.13234 * 179.97438 * 17 16 15 45 45 H 0.97001 * 120.00340 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -0.8547 -1.1614 5 7 4.6214 -0.8536 -1.1617 6 6 5.3530 0.1683 -1.9145 7 6 5.6081 -0.3318 -3.3379 8 8 4.3616 -0.4839 -4.0198 9 6 4.4880 -0.9497 -5.3649 10 6 5.2962 -1.7926 -0.4694 11 8 4.6906 -2.6384 0.1542 12 6 6.8032 -1.7911 -0.4692 13 6 7.3066 -2.9342 0.3740 14 6 7.6345 -2.7265 1.6945 15 6 8.0973 -3.7762 2.4725 16 6 8.2360 -5.0452 1.9315 17 6 7.9154 -5.2758 0.6135 18 6 7.4380 -4.2191 -0.1841 19 6 7.0983 -4.4457 -1.5378 20 1 6.3738 -3.8109 -2.0263 21 6 7.7007 -5.4925 -2.2445 22 7 8.7873 -6.0546 -1.7810 23 14 6.9534 -6.0873 -3.8500 24 1 6.9208 -4.9680 -4.8253 25 1 7.7751 -7.1965 -4.3975 26 1 5.5708 -6.5697 -3.6036 27 1 -1.0498 0.0000 -0.0004 28 1 3.0096 -0.4108 0.9415 29 1 3.0089 1.0222 -0.1143 30 1 2.7929 -0.4432 -2.1029 31 1 2.7936 -1.8762 -1.0471 32 1 4.7631 1.0842 -1.9515 33 1 6.3053 0.3690 -1.4238 34 1 6.2281 0.3892 -3.8706 35 1 6.1205 -1.2930 -3.2989 36 1 5.0849 -0.2419 -5.9400 37 1 4.9770 -1.9238 -5.3675 38 1 3.4983 -1.0391 -5.8129 39 1 7.1667 -1.9049 -1.4905 40 1 7.1656 -0.8492 -0.0574 41 1 7.5299 -1.7421 2.1264 42 1 8.3525 -3.6040 3.5077 43 1 8.5972 -5.8559 2.5470 44 1 8.0246 -6.2649 0.1940 45 1 9.2047 -6.7805 -2.2707 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856390201.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:55 Heat of formation + Delta-G solvation = -30.510270 kcal Electronic energy + Delta-G solvation = -26606.154146 eV Core-core repulsion = 22975.222880 eV Total energy + Delta-G solvation = -3630.931266 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.10870 -39.31428 -38.67179 -36.89644 -35.49819 -35.13723 -33.41518 -31.63576 -31.31755 -29.99478 -28.42275 -27.15091 -26.90512 -24.66872 -23.98575 -22.80805 -21.65325 -19.86022 -19.06972 -19.03067 -18.16187 -17.62068 -17.07587 -17.00190 -16.71038 -16.22864 -16.16547 -15.69304 -15.44491 -15.34466 -15.12647 -14.64406 -14.39742 -14.30058 -13.84959 -13.52809 -13.42805 -13.25067 -13.07002 -12.91632 -12.87539 -12.74225 -12.65688 -12.48956 -12.41893 -12.13103 -11.98566 -11.34786 -11.30478 -11.19502 -11.03643 -11.01777 -10.70229 -10.55911 -9.60638 -9.21138 -9.14366 -8.59614 -6.28874 0.99855 1.14386 1.31869 1.41551 1.51669 1.74221 1.86921 1.91864 2.17223 2.23135 2.78378 2.90937 3.57933 3.67477 3.93692 4.10696 4.20181 4.27247 4.30759 4.36501 4.40749 4.45844 4.49367 4.54218 4.61425 4.62900 4.69680 4.72487 4.78650 4.85237 4.89979 4.96772 5.05282 5.11095 5.16769 5.19670 5.38116 5.56224 5.68194 5.78453 6.04663 6.17531 6.20810 6.23179 6.43080 6.52706 6.70333 6.74862 6.99956 7.12566 7.40634 8.36531 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010018 B = 0.005205 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.330327 B = 5378.156557 C = 6988.810358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.219 4.219 3 C -0.019 4.019 4 C 0.133 3.867 5 N -0.609 5.609 6 C 0.108 3.892 7 C 0.034 3.966 8 O -0.405 6.405 9 C 0.028 3.972 10 C 0.516 3.484 11 O -0.574 6.574 12 C -0.066 4.066 13 C -0.187 4.187 14 C -0.091 4.091 15 C -0.241 4.241 16 C -0.118 4.118 17 C -0.194 4.194 18 C 0.097 3.903 19 C -0.481 4.481 20 H 0.066 0.934 21 C 0.040 3.960 22 N -0.825 5.825 23 Si 0.963 3.037 24 H -0.252 1.252 25 H -0.265 1.265 26 H -0.275 1.275 27 H 0.249 0.751 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.045 0.955 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.032 0.968 36 H 0.060 0.940 37 H 0.025 0.975 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.104 0.896 44 H 0.095 0.905 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.064 15.379 -5.939 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.220 4.220 3 C -0.057 4.057 4 C 0.010 3.990 5 N -0.342 5.342 6 C -0.014 4.014 7 C -0.043 4.043 8 O -0.325 6.325 9 C -0.068 4.068 10 C 0.306 3.694 11 O -0.452 6.452 12 C -0.105 4.105 13 C -0.188 4.188 14 C -0.109 4.109 15 C -0.261 4.261 16 C -0.137 4.137 17 C -0.214 4.214 18 C 0.095 3.905 19 C -0.510 4.510 20 H 0.085 0.915 21 C -0.175 4.175 22 N -0.451 5.451 23 Si 0.785 3.215 24 H -0.176 1.176 25 H -0.189 1.189 26 H -0.200 1.200 27 H 0.265 0.735 28 H 0.086 0.914 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.064 0.936 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.341 14.797 -5.600 17.442 hybrid contribution -0.051 -1.204 -0.714 1.401 sum -7.393 13.593 -6.313 16.712 Atomic orbital electron populations 1.25708 0.96782 0.99801 0.99301 1.23332 0.95063 1.01654 1.01946 1.18981 0.85028 1.02220 0.99436 1.21181 0.79634 0.99534 0.98647 1.47980 1.06192 1.30364 1.49644 1.22008 0.99512 0.91019 0.88876 1.23233 0.86467 1.00582 0.94067 1.87812 1.30372 1.87524 1.26748 1.22841 1.03332 0.97936 0.82740 1.21252 0.90990 0.79675 0.77473 1.90663 1.71175 1.38705 1.44629 1.20339 0.89971 0.98447 1.01788 1.19575 1.10024 0.93919 0.95322 1.20743 0.98604 0.98248 0.93272 1.20720 1.11982 0.93701 0.99649 1.20944 1.00584 0.97039 0.95110 1.21300 1.07421 0.98976 0.93674 1.17712 0.88820 0.90814 0.93195 1.19525 1.21773 1.13507 0.96238 0.91538 1.26569 0.93503 0.94875 1.02524 1.69868 1.15133 1.20424 1.39693 0.85544 0.78838 0.79154 0.78001 1.17619 1.18867 1.20014 0.73474 0.91360 0.87156 0.88329 0.93640 0.86768 0.86300 0.89241 0.94919 0.92140 0.95605 0.88704 0.88742 0.86563 0.86355 0.86699 0.87808 0.88652 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.27 19.25 74.32 1.43 -2.84 16 2 C -0.22 -5.63 13.34 31.13 0.42 -5.21 16 3 C -0.02 -0.48 6.03 28.79 0.17 -0.31 16 4 C 0.13 3.85 5.18 86.38 0.45 4.30 16 5 N -0.61 -17.83 2.44 -821.81 -2.00 -19.83 16 6 C 0.11 2.11 5.62 86.38 0.49 2.60 16 7 C 0.03 0.74 6.28 71.98 0.45 1.19 16 8 O -0.41 -9.84 9.53 -148.98 -1.42 -11.26 16 9 C 0.03 0.56 11.01 113.37 1.25 1.81 16 10 C 0.52 20.16 7.28 87.65 0.64 20.80 16 11 O -0.57 -28.68 15.61 -3.04 -0.05 -28.72 16 12 C -0.07 -2.49 3.73 29.10 0.11 -2.38 16 13 C -0.19 -8.97 4.43 -19.40 -0.09 -9.05 16 14 C -0.09 -4.06 9.66 22.22 0.21 -3.85 16 15 C -0.24 -11.04 10.05 22.46 0.23 -10.82 16 16 C -0.12 -5.91 10.02 22.22 0.22 -5.69 16 17 C -0.19 -10.89 8.69 22.73 0.20 -10.69 16 18 C 0.10 5.35 5.56 -21.29 -0.12 5.24 16 19 C -0.48 -26.26 8.14 23.46 0.19 -26.07 16 20 H 0.07 3.58 6.67 -2.91 -0.02 3.56 16 21 C 0.04 2.06 5.16 85.25 0.44 2.50 16 22 N -0.82 -44.05 10.96 21.82 0.24 -43.81 16 23 Si 0.96 39.70 29.59 68.60 2.03 41.73 16 24 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 25 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 27 H 0.25 3.13 7.80 -4.43 -0.03 3.09 16 28 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 30 H 0.10 2.55 7.11 -2.39 -0.02 2.54 16 31 H 0.04 1.65 7.42 -2.38 -0.02 1.64 16 32 H 0.11 1.60 8.07 -2.38 -0.02 1.58 16 33 H 0.12 1.84 6.44 -2.39 -0.02 1.83 16 34 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.03 0.91 7.30 -2.39 -0.02 0.89 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.09 3.55 6.20 -2.39 -0.01 3.54 16 40 H 0.12 3.32 7.31 -2.39 -0.02 3.30 16 41 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 42 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 43 H 0.10 4.62 8.06 -2.91 -0.02 4.59 16 44 H 0.10 5.60 6.20 -2.92 -0.02 5.59 16 45 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 Total: -1.00 -73.65 380.74 6.46 -67.19 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.97 Total: 33.17 kcal Atomic # 6 Polarization: -45.16 SS G_CDS: 6.69 Total: -38.47 kcal Atomic # 7 Polarization: -61.88 SS G_CDS: -1.76 Total: -63.64 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -1.47 Total: -39.98 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -73.65 6.46 -67.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856390201.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.680 kcal (2) G-P(sol) polarization free energy of solvation -73.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds