Wall clock time and date at job start Tue Mar 31 2020 10:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.46780 * 2 1 4 4 C 1.35914 * 117.00048 * 180.02562 * 3 2 1 5 5 C 1.38906 * 119.96963 * 0.02562 * 4 3 2 6 6 C 1.38287 * 120.28909 * 179.97438 * 5 4 3 7 7 C 1.37941 * 120.23050 * 0.02562 * 6 5 4 8 8 C 1.39829 * 119.93928 * 359.69645 * 7 6 5 9 9 C 1.47218 * 120.14184 * 180.32368 * 8 7 6 10 10 C 1.34803 * 120.00188 * 0.25587 * 9 8 7 11 11 C 1.46429 * 119.99827 * 179.97438 * 10 9 8 12 12 O 1.21697 * 120.00143 * 2.11667 * 11 10 9 13 13 N 1.34776 * 119.99932 * 182.10738 * 11 10 9 14 14 C 1.46497 * 120.00336 * 185.13745 * 13 11 10 15 15 C 1.52992 * 109.47655 * 184.30180 * 14 13 11 16 16 C 1.50702 * 115.55019 * 64.87760 * 15 14 13 17 17 H 1.08000 * 120.00579 * 266.34397 * 16 15 14 18 18 C 1.37884 * 119.99546 * 86.34462 * 16 15 14 19 19 N 1.31517 * 119.99842 * 180.44152 * 18 16 15 20 20 Si 1.86803 * 120.00099 * 0.44261 * 18 16 15 21 21 H 1.48503 * 109.46956 * 84.89408 * 20 18 16 22 22 H 1.48497 * 109.47061 * 204.89458 * 20 18 16 23 23 H 1.48498 * 109.47062 * 324.89513 * 20 18 16 24 24 C 1.53008 * 117.49854 * 279.21666 * 15 14 13 25 25 C 1.53004 * 117.50301 * 210.55738 * 15 14 13 26 26 C 1.38378 * 119.97082 * 179.97438 * 4 3 2 27 27 H 1.08997 * 109.46788 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47294 * 299.99753 * 1 2 3 29 29 H 1.09000 * 109.47094 * 60.00447 * 1 2 3 30 30 H 1.08995 * 109.47294 * 240.00246 * 2 1 3 31 31 H 1.08991 * 109.47265 * 119.99503 * 2 1 3 32 32 H 1.07998 * 119.85354 * 0.02927 * 5 4 3 33 33 H 1.07997 * 119.88056 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.02503 * 180.02562 * 7 6 5 35 35 H 1.07999 * 119.99441 * 180.24682 * 9 8 7 36 36 H 1.08000 * 119.99890 * 359.97438 * 10 9 8 37 37 H 0.97003 * 119.99918 * 5.13755 * 13 11 10 38 38 H 1.09005 * 109.46947 * 304.30012 * 14 13 11 39 39 H 1.09001 * 109.46990 * 64.29683 * 14 13 11 40 40 H 0.96997 * 119.99819 * 180.02562 * 19 18 16 41 41 H 1.09005 * 117.49611 * 359.97438 * 24 15 14 42 42 H 1.08994 * 117.49987 * 145.01807 * 24 15 14 43 43 H 1.08998 * 117.49687 * 214.97672 * 25 15 14 44 44 H 1.09001 * 117.49596 * 359.96903 * 25 15 14 45 45 H 1.07994 * 120.11997 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3537 1.5255 -0.0005 5 6 4.1993 0.4235 -0.0016 6 6 5.5712 0.5972 -0.0027 7 6 6.1106 1.8667 -0.0022 8 6 5.2682 2.9828 -0.0070 9 6 5.8391 4.3398 -0.0137 10 6 7.1765 4.5084 -0.0204 11 6 7.7442 5.8582 -0.0276 12 8 7.0095 6.8276 0.0113 13 7 9.0805 6.0269 -0.0773 14 6 9.6535 7.3710 0.0289 15 6 11.1695 7.2958 -0.1630 16 6 11.6307 6.8499 -1.5266 17 1 11.8452 5.8074 -1.7101 18 6 11.7790 7.7730 -2.5401 19 7 12.1731 7.3827 -3.7326 20 14 11.4200 9.5779 -2.2194 21 1 12.6243 10.2271 -1.6419 22 1 11.0619 10.2459 -3.4964 23 1 10.2885 9.6956 -1.2649 24 6 12.0140 6.8739 1.0412 25 6 12.0266 8.3301 0.5695 26 6 3.8818 2.8045 -0.0011 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 3.7835 -0.5732 -0.0025 33 1 6.2226 -0.2643 -0.0039 34 1 7.1825 1.9985 -0.0035 35 1 5.1863 5.2002 -0.0134 36 1 7.8293 3.6480 -0.0205 37 1 9.6628 5.2584 -0.1833 38 1 9.2214 8.0120 -0.7396 39 1 9.4319 7.7837 1.0131 40 1 12.2777 8.0321 -4.4454 41 1 11.4894 6.6504 1.9702 42 1 12.9033 6.2744 0.8470 43 1 12.9242 8.6879 0.0651 44 1 11.5103 9.0645 1.1877 45 1 3.2253 3.6620 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861497747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:12 Heat of formation + Delta-G solvation = -13.566351 kcal Electronic energy + Delta-G solvation = -24468.011048 eV Core-core repulsion = 20837.814526 eV Total energy + Delta-G solvation = -3630.196523 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.40535 -39.23541 -37.98373 -37.04950 -33.83502 -33.41558 -32.37870 -32.13154 -30.48474 -29.27768 -26.93408 -25.46312 -24.50852 -22.97671 -22.74857 -21.75365 -20.74265 -19.59030 -18.98148 -18.01252 -17.13344 -16.47292 -16.46460 -16.28716 -15.84088 -15.12736 -14.99243 -14.65605 -14.37308 -13.90112 -13.82807 -13.76893 -13.55500 -13.05703 -12.92385 -12.81431 -12.55934 -12.46322 -12.38382 -12.07577 -11.95795 -11.58617 -11.21723 -11.17002 -11.03494 -10.77496 -10.50037 -10.26979 -10.19880 -9.76194 -9.48853 -9.19656 -8.70484 -8.65855 -8.58299 -8.38875 -8.16932 -6.16019 -4.20763 0.45196 1.21952 1.99190 2.83317 3.29191 3.39234 3.43540 3.51237 3.73910 3.84519 4.39930 4.44771 4.49167 4.53516 4.68144 4.74259 4.82281 4.86863 4.98765 5.02496 5.12394 5.17185 5.25230 5.34674 5.35245 5.53047 5.60995 5.67570 5.69004 5.97466 6.00277 6.02438 6.05420 6.18657 6.21700 6.28928 6.40588 6.48153 6.55372 6.56840 6.69682 6.98772 7.06351 7.12305 7.12878 7.66944 8.15890 8.40249 8.74924 8.83751 9.46988 10.95277 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.025215 B = 0.002131 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.179947 B =13137.894414 C =13181.789194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.317 6.317 4 C 0.126 3.874 5 C -0.206 4.206 6 C -0.080 4.080 7 C -0.142 4.142 8 C -0.023 4.023 9 C -0.045 4.045 10 C -0.181 4.181 11 C 0.535 3.465 12 O -0.559 6.559 13 N -0.694 5.694 14 C 0.154 3.846 15 C -0.018 4.018 16 C -0.490 4.490 17 H 0.078 0.922 18 C 0.079 3.921 19 N -0.895 5.895 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.259 1.259 24 C -0.178 4.178 25 C -0.194 4.194 26 C -0.134 4.134 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.405 0.595 38 H 0.068 0.932 39 H 0.043 0.957 40 H 0.266 0.734 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.326 -16.054 9.161 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.231 6.231 4 C 0.081 3.919 5 C -0.224 4.224 6 C -0.098 4.098 7 C -0.160 4.160 8 C -0.023 4.023 9 C -0.065 4.065 10 C -0.201 4.201 11 C 0.323 3.677 12 O -0.441 6.441 13 N -0.342 5.342 14 C 0.030 3.970 15 C -0.019 4.019 16 C -0.527 4.527 17 H 0.096 0.904 18 C -0.124 4.124 19 N -0.531 5.531 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.221 1.221 23 H -0.183 1.183 24 C -0.215 4.215 25 C -0.232 4.232 26 C -0.153 4.153 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.144 0.856 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.240 0.760 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.093 0.907 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.917 -15.150 9.001 25.131 hybrid contribution 0.363 0.350 -0.091 0.512 sum -17.554 -14.800 8.909 24.629 Atomic orbital electron populations 1.21779 0.92700 1.02859 1.03642 1.22780 0.95921 0.81992 1.01383 1.86084 1.18979 1.29278 1.88765 1.18828 0.82301 0.93941 0.96782 1.21329 0.94477 0.97916 1.08726 1.20876 0.94213 0.97315 0.97422 1.21393 1.00210 0.91773 1.02598 1.18819 0.92127 0.93049 0.98329 1.22246 0.95428 0.94897 0.93948 1.23129 0.96202 0.96966 1.03834 1.18281 0.82753 0.89160 0.77500 1.90771 1.59828 1.41950 1.51527 1.45751 1.05944 1.11050 1.71466 1.21183 0.93737 0.82750 0.99295 1.19645 0.88324 1.00064 0.93846 1.20167 1.45590 0.96145 0.90799 0.90370 1.24978 0.93693 0.99016 0.94701 1.69880 1.46137 1.35000 1.02121 0.86861 0.79633 0.85230 0.77476 1.20218 1.22099 1.18321 1.22843 1.03263 0.97429 0.97994 1.22973 1.03449 0.91984 1.04790 1.20593 0.94214 0.95186 1.05258 0.90367 0.91473 0.91434 0.92005 0.92043 0.85567 0.85426 0.85027 0.84520 0.85234 0.76050 0.91359 0.93867 0.92450 0.90855 0.89368 0.89063 0.90735 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.28 37.16 0.38 -0.38 16 2 C 0.05 0.36 5.46 37.16 0.20 0.56 16 3 O -0.32 -3.20 10.13 -19.47 -0.20 -3.40 16 4 C 0.13 1.35 6.68 -39.28 -0.26 1.09 16 5 C -0.21 -1.88 9.04 -39.32 -0.36 -2.24 16 6 C -0.08 -0.73 10.02 -39.67 -0.40 -1.13 16 7 C -0.14 -1.48 9.41 -39.10 -0.37 -1.84 16 8 C -0.02 -0.27 5.87 -105.08 -0.62 -0.89 16 9 C -0.05 -0.60 9.46 -37.15 -0.35 -0.95 16 10 C -0.18 -2.54 9.41 -37.50 -0.35 -2.89 16 11 C 0.54 9.85 7.74 -12.96 -0.10 9.75 16 12 O -0.56 -12.22 16.22 5.19 0.08 -12.14 16 13 N -0.69 -13.01 5.45 -61.71 -0.34 -13.34 16 14 C 0.15 3.26 5.22 -4.05 -0.02 3.24 16 15 C -0.02 -0.39 0.84 -155.66 -0.13 -0.52 16 16 C -0.49 -12.86 9.29 -34.44 -0.32 -13.18 16 17 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 18 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 19 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 20 Si 0.88 21.61 24.81 -169.99 -4.22 17.39 16 21 H -0.28 -6.57 7.04 56.52 0.40 -6.18 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.26 -6.16 5.90 56.52 0.33 -5.83 16 24 C -0.18 -3.36 9.96 -26.69 -0.27 -3.63 16 25 C -0.19 -3.96 7.62 -26.69 -0.20 -4.17 16 26 C -0.13 -1.53 9.73 -38.95 -0.38 -1.91 16 27 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 31 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 32 H 0.13 0.86 6.28 -52.49 -0.33 0.53 16 33 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.13 1.19 6.16 -52.49 -0.32 0.87 16 35 H 0.14 1.88 7.52 -52.49 -0.39 1.49 16 36 H 0.13 1.46 6.07 -52.49 -0.32 1.14 16 37 H 0.40 6.87 8.42 -40.82 -0.34 6.52 16 38 H 0.07 1.63 6.62 -51.93 -0.34 1.29 16 39 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 43 H 0.09 1.96 7.17 -51.93 -0.37 1.59 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 375.08 15.07 5.65 5.65 Total: -1.00 -32.20 375.08 -8.53 -40.73 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.65 Total: 7.85 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -3.64 Total: -16.96 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.44 Total: -39.13 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.11 Total: -15.54 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.22 Total: 17.39 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.20 -8.53 -40.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861497747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.169 kcal (2) G-P(sol) polarization free energy of solvation -32.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds