Wall clock time and date at job start Tue Mar 31 2020 10:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42903 * 109.46780 * 2 1 4 4 C 1.35914 * 117.00048 * 180.02562 * 3 2 1 5 5 C 1.38906 * 119.96963 * 0.02562 * 4 3 2 6 6 C 1.38287 * 120.28909 * 179.97438 * 5 4 3 7 7 C 1.37941 * 120.23050 * 0.02562 * 6 5 4 8 8 C 1.39829 * 119.93928 * 359.69645 * 7 6 5 9 9 C 1.47218 * 120.14184 * 180.32368 * 8 7 6 10 10 C 1.34803 * 120.00188 * 0.25587 * 9 8 7 11 11 C 1.46429 * 119.99827 * 179.97438 * 10 9 8 12 12 O 1.21697 * 120.00143 * 2.11667 * 11 10 9 13 13 N 1.34776 * 119.99932 * 182.10738 * 11 10 9 14 14 C 1.46497 * 120.00336 * 185.13745 * 13 11 10 15 15 C 1.52992 * 109.47655 * 184.30180 * 14 13 11 16 16 C 1.50702 * 115.55019 * 64.87760 * 15 14 13 17 17 H 1.08000 * 120.00579 * 266.34397 * 16 15 14 18 18 C 1.37884 * 119.99546 * 86.34462 * 16 15 14 19 19 N 1.31517 * 119.99842 * 180.44152 * 18 16 15 20 20 Si 1.86803 * 120.00099 * 0.44261 * 18 16 15 21 21 H 1.48503 * 109.46956 * 84.89408 * 20 18 16 22 22 H 1.48497 * 109.47061 * 204.89458 * 20 18 16 23 23 H 1.48498 * 109.47062 * 324.89513 * 20 18 16 24 24 C 1.53008 * 117.49854 * 279.21666 * 15 14 13 25 25 C 1.53004 * 117.50301 * 210.55738 * 15 14 13 26 26 C 1.38378 * 119.97082 * 179.97438 * 4 3 2 27 27 H 1.08997 * 109.46788 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47294 * 299.99753 * 1 2 3 29 29 H 1.09000 * 109.47094 * 60.00447 * 1 2 3 30 30 H 1.08995 * 109.47294 * 240.00246 * 2 1 3 31 31 H 1.08991 * 109.47265 * 119.99503 * 2 1 3 32 32 H 1.07998 * 119.85354 * 0.02927 * 5 4 3 33 33 H 1.07997 * 119.88056 * 180.02562 * 6 5 4 34 34 H 1.07998 * 120.02503 * 180.02562 * 7 6 5 35 35 H 1.07999 * 119.99441 * 180.24682 * 9 8 7 36 36 H 1.08000 * 119.99890 * 359.97438 * 10 9 8 37 37 H 0.97003 * 119.99918 * 5.13755 * 13 11 10 38 38 H 1.09005 * 109.46947 * 304.30012 * 14 13 11 39 39 H 1.09001 * 109.46990 * 64.29683 * 14 13 11 40 40 H 0.96997 * 119.99819 * 180.02562 * 19 18 16 41 41 H 1.09005 * 117.49611 * 359.97438 * 24 15 14 42 42 H 1.08994 * 117.49987 * 145.01807 * 24 15 14 43 43 H 1.08998 * 117.49687 * 214.97672 * 25 15 14 44 44 H 1.09001 * 117.49596 * 359.96903 * 25 15 14 45 45 H 1.07994 * 120.11997 * 0.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3537 1.5255 -0.0005 5 6 4.1993 0.4235 -0.0016 6 6 5.5712 0.5972 -0.0027 7 6 6.1106 1.8667 -0.0022 8 6 5.2682 2.9828 -0.0070 9 6 5.8391 4.3398 -0.0137 10 6 7.1765 4.5084 -0.0204 11 6 7.7442 5.8582 -0.0276 12 8 7.0095 6.8276 0.0113 13 7 9.0805 6.0269 -0.0773 14 6 9.6535 7.3710 0.0289 15 6 11.1695 7.2958 -0.1630 16 6 11.6307 6.8499 -1.5266 17 1 11.8452 5.8074 -1.7101 18 6 11.7790 7.7730 -2.5401 19 7 12.1731 7.3827 -3.7326 20 14 11.4200 9.5779 -2.2194 21 1 12.6243 10.2271 -1.6419 22 1 11.0619 10.2459 -3.4964 23 1 10.2885 9.6956 -1.2649 24 6 12.0140 6.8739 1.0412 25 6 12.0266 8.3301 0.5695 26 6 3.8818 2.8045 -0.0011 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 3.7835 -0.5732 -0.0025 33 1 6.2226 -0.2643 -0.0039 34 1 7.1825 1.9985 -0.0035 35 1 5.1863 5.2002 -0.0134 36 1 7.8293 3.6480 -0.0205 37 1 9.6628 5.2584 -0.1833 38 1 9.2214 8.0120 -0.7396 39 1 9.4319 7.7837 1.0131 40 1 12.2777 8.0321 -4.4454 41 1 11.4894 6.6504 1.9702 42 1 12.9033 6.2744 0.8470 43 1 12.9242 8.6879 0.0651 44 1 11.5103 9.0645 1.1877 45 1 3.2253 3.6620 -0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861497747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:11 Heat of formation + Delta-G solvation = -33.408402 kcal Electronic energy + Delta-G solvation = -24468.871464 eV Core-core repulsion = 20837.814526 eV Total energy + Delta-G solvation = -3631.056939 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.16267 -40.67520 -38.90703 -38.57126 -35.01318 -34.79904 -34.21049 -32.92219 -31.30042 -30.13734 -28.52641 -27.29224 -25.38377 -23.80803 -23.57972 -23.30058 -21.76198 -21.18691 -20.36133 -18.86348 -18.62317 -17.98208 -17.17122 -17.04069 -16.97036 -16.87036 -16.30258 -16.02338 -15.73186 -15.16997 -14.79856 -14.67405 -14.56903 -14.40499 -14.27778 -14.21352 -13.78673 -13.40973 -13.24991 -13.17281 -13.09961 -12.70038 -12.63562 -12.34743 -12.17482 -11.99975 -11.77732 -11.75677 -11.61116 -11.17061 -11.09463 -10.97621 -10.66090 -10.34980 -9.94173 -9.49148 -9.09760 -8.30362 -6.36131 -0.50033 0.45186 0.98657 1.33039 1.38890 1.48009 2.16816 2.30137 2.35694 2.38671 2.88137 3.04904 3.24809 3.64846 3.79938 3.97242 4.01456 4.06311 4.06842 4.17310 4.21144 4.33902 4.36739 4.38079 4.42361 4.45253 4.51217 4.52765 4.82016 4.85299 4.87918 4.92153 4.94494 5.09834 5.10440 5.18845 5.24958 5.30861 5.33849 5.44711 5.49863 5.58042 5.64064 5.69770 5.75768 6.28112 6.44158 6.69151 6.74694 7.30547 7.34537 8.84150 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.025215 B = 0.002131 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.179947 B =13137.894414 C =13181.789194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.336 6.336 4 C 0.115 3.885 5 C -0.198 4.198 6 C -0.080 4.080 7 C -0.145 4.145 8 C -0.042 4.042 9 C -0.025 4.025 10 C -0.195 4.195 11 C 0.533 3.467 12 O -0.602 6.602 13 N -0.694 5.694 14 C 0.162 3.838 15 C -0.044 4.044 16 C -0.476 4.476 17 H 0.047 0.953 18 C 0.024 3.976 19 N -0.944 5.944 20 Si 0.929 3.071 21 H -0.261 1.261 22 H -0.304 1.304 23 H -0.248 1.248 24 C -0.148 4.148 25 C -0.195 4.195 26 C -0.149 4.149 27 H 0.101 0.899 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.146 0.854 35 H 0.124 0.876 36 H 0.161 0.839 37 H 0.413 0.587 38 H 0.034 0.966 39 H 0.059 0.941 40 H 0.264 0.736 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.898 -17.974 11.175 27.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.251 6.251 4 C 0.069 3.931 5 C -0.216 4.216 6 C -0.098 4.098 7 C -0.163 4.163 8 C -0.042 4.042 9 C -0.045 4.045 10 C -0.216 4.216 11 C 0.323 3.677 12 O -0.486 6.486 13 N -0.342 5.342 14 C 0.038 3.962 15 C -0.045 4.045 16 C -0.513 4.513 17 H 0.066 0.934 18 C -0.174 4.174 19 N -0.583 5.583 20 Si 0.755 3.245 21 H -0.186 1.186 22 H -0.232 1.232 23 H -0.172 1.172 24 C -0.185 4.185 25 C -0.232 4.232 26 C -0.168 4.168 27 H 0.120 0.880 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.171 0.829 33 H 0.176 0.824 34 H 0.163 0.837 35 H 0.141 0.859 36 H 0.178 0.822 37 H 0.249 0.751 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.123 0.877 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.117 0.883 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.480 -17.095 11.045 27.491 hybrid contribution 0.414 0.759 -0.698 1.111 sum -18.066 -16.336 10.347 26.463 Atomic orbital electron populations 1.21817 0.91770 1.04192 1.03044 1.23085 0.96752 0.80633 1.02502 1.86072 1.18707 1.31560 1.88732 1.18965 0.82975 0.94086 0.97039 1.21687 0.94492 0.98671 1.06791 1.21250 0.94624 0.97715 0.96188 1.21644 1.00818 0.91898 1.01915 1.18749 0.92487 0.92562 1.00436 1.22300 0.95071 0.95618 0.91558 1.22988 0.96719 0.95430 1.06415 1.18906 0.82247 0.90388 0.76147 1.90743 1.60586 1.43733 1.53538 1.45717 1.06377 1.10499 1.71593 1.20918 0.92801 0.83564 0.98917 1.19476 0.89066 1.03058 0.92913 1.20358 1.43503 0.94609 0.92851 0.93435 1.25721 0.94214 1.02893 0.94610 1.70010 1.48970 1.36141 1.03223 0.86058 0.80301 0.81023 0.77118 1.18561 1.23180 1.17157 1.22883 1.02110 0.96130 0.97354 1.23040 1.02458 0.93251 1.04478 1.20699 0.94312 0.95931 1.05830 0.88044 0.91996 0.92121 0.90909 0.90733 0.82919 0.82450 0.83682 0.85859 0.82210 0.75065 0.94728 0.92276 0.92720 0.87651 0.89393 0.90289 0.88347 0.85052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 71.98 0.74 -0.51 16 2 C 0.04 0.49 5.46 71.98 0.39 0.88 16 3 O -0.34 -6.43 10.13 -92.58 -0.94 -7.37 16 4 C 0.11 2.30 6.68 22.46 0.15 2.45 16 5 C -0.20 -3.06 9.04 22.44 0.20 -2.86 16 6 C -0.08 -1.20 10.02 22.21 0.22 -0.97 16 7 C -0.14 -2.69 9.41 22.58 0.21 -2.48 16 8 C -0.04 -0.96 5.87 -20.16 -0.12 -1.07 16 9 C -0.03 -0.67 9.46 23.84 0.23 -0.44 16 10 C -0.20 -5.36 9.41 23.62 0.22 -5.14 16 11 C 0.53 19.60 7.74 86.38 0.67 20.27 16 12 O -0.60 -26.78 16.22 -4.34 -0.07 -26.85 16 13 N -0.69 -25.61 5.45 -467.35 -2.55 -28.16 16 14 C 0.16 6.74 5.22 86.38 0.45 7.20 16 15 C -0.04 -1.87 0.84 -52.93 -0.04 -1.92 16 16 C -0.48 -25.22 9.29 25.60 0.24 -24.98 16 17 H 0.05 2.75 8.06 -2.91 -0.02 2.72 16 18 C 0.02 1.34 5.47 84.66 0.46 1.80 16 19 N -0.94 -57.79 13.96 21.45 0.30 -57.49 16 20 Si 0.93 44.83 24.81 68.60 1.70 46.53 16 21 H -0.26 -11.81 7.04 99.48 0.70 -11.11 16 22 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 23 H -0.25 -11.43 5.90 99.48 0.59 -10.84 16 24 C -0.15 -5.13 9.96 30.62 0.30 -4.83 16 25 C -0.19 -7.43 7.62 30.62 0.23 -7.20 16 26 C -0.15 -3.36 9.73 22.68 0.22 -3.14 16 27 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.63 7.65 -2.39 -0.02 0.62 16 31 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 32 H 0.15 1.48 6.28 -2.91 -0.02 1.46 16 33 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.15 2.22 6.16 -2.91 -0.02 2.20 16 35 H 0.12 3.53 7.52 -2.91 -0.02 3.51 16 36 H 0.16 3.29 6.07 -2.91 -0.02 3.27 16 37 H 0.41 13.67 8.42 -92.71 -0.78 12.89 16 38 H 0.03 1.66 6.62 -2.38 -0.02 1.64 16 39 H 0.06 2.26 8.09 -2.39 -0.02 2.24 16 40 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.11 3.04 8.14 -2.38 -0.02 3.02 16 42 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 43 H 0.08 3.22 7.17 -2.39 -0.02 3.21 16 44 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 45 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -71.83 375.08 3.32 -68.51 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.09 Total: 27.77 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 4.78 Total: -22.95 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -2.25 Total: -85.65 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -1.01 Total: -34.22 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.70 Total: 46.53 kcal Total: -71.83 3.32 -68.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861497747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.104 kcal (2) G-P(sol) polarization free energy of solvation -71.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds