Wall clock time and date at job start Tue Mar 31 2020 10:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50694 * 120.00039 * 2 1 4 4 N 1.46507 * 109.47147 * 124.99707 * 3 2 1 5 5 C 1.46498 * 119.99904 * 269.99936 * 4 3 2 6 6 C 1.50704 * 109.47078 * 269.99892 * 5 4 3 7 7 H 1.07999 * 119.99554 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99742 * 180.02562 * 6 5 4 9 9 N 1.31518 * 120.00378 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 119.99985 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46640 * 60.00227 * 10 8 6 12 12 H 1.48499 * 109.47262 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47092 * 300.00294 * 10 8 6 14 14 C 1.34781 * 119.99933 * 90.00247 * 4 3 2 15 15 O 1.21690 * 119.99801 * 180.02562 * 14 4 3 16 16 C 1.46429 * 119.99735 * 359.97438 * 14 4 3 17 17 C 1.34804 * 119.99771 * 173.28348 * 16 14 4 18 18 C 1.47215 * 120.00063 * 348.77134 * 17 16 14 19 19 C 1.39871 * 120.14577 * 131.95391 * 18 17 16 20 20 C 1.37888 * 119.94096 * 179.97438 * 19 18 17 21 21 C 1.38331 * 120.23026 * 359.97395 * 20 19 18 22 22 C 1.38858 * 120.29420 * 359.76792 * 21 20 19 23 23 O 1.35909 * 119.97540 * 180.28074 * 22 21 20 24 24 C 1.42893 * 117.00071 * 0.23279 * 23 22 21 25 25 C 1.53006 * 109.47351 * 180.02562 * 24 23 22 26 26 C 1.38431 * 120.05200 * 0.51268 * 22 21 20 27 27 H 1.08001 * 119.99834 * 0.02562 * 1 2 3 28 28 H 1.07998 * 120.00511 * 180.02562 * 1 2 3 29 29 H 1.08001 * 119.99834 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47529 * 4.99589 * 3 2 1 31 31 H 1.09000 * 109.47460 * 244.99441 * 3 2 1 32 32 H 1.08995 * 109.47050 * 30.00240 * 5 4 3 33 33 H 1.08998 * 109.46811 * 150.00069 * 5 4 3 34 34 H 0.96997 * 120.00338 * 179.97438 * 9 8 6 35 35 H 1.08004 * 120.00473 * 353.27989 * 16 14 4 36 36 H 1.08010 * 119.99974 * 168.76931 * 17 16 14 37 37 H 1.08003 * 120.02785 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.88903 * 179.97438 * 20 19 18 39 39 H 1.08004 * 119.85592 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.46777 * 300.00010 * 24 23 22 41 41 H 1.08998 * 109.47249 * 60.00155 * 24 23 22 42 42 H 1.09005 * 109.46397 * 300.00325 * 25 24 23 43 43 H 1.09004 * 109.46987 * 59.99377 * 25 24 23 44 44 H 1.08991 * 109.47405 * 180.02562 * 25 24 23 45 45 H 1.07992 * 120.11454 * 179.74562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3050 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5587 1.8650 2.4249 6 6 2.8442 3.3437 2.4804 7 1 3.3032 3.8370 1.6364 8 6 2.5192 4.0666 3.6085 9 7 1.9597 3.4658 4.6360 10 14 2.8737 5.8994 3.6777 11 1 2.1379 6.5872 2.5865 12 1 2.4326 6.4398 4.9887 13 1 4.3316 6.1282 3.5125 14 6 4.2497 0.8661 0.9825 15 8 5.0222 0.8880 1.9225 16 6 4.6842 0.3329 -0.3101 17 6 5.9749 -0.0069 -0.4996 18 6 6.9915 0.3818 0.4917 19 6 7.9105 -0.5617 0.9625 20 6 8.8612 -0.1929 1.8906 21 6 8.9103 1.1081 2.3580 22 6 8.0062 2.0540 1.8933 23 8 8.0639 3.3317 2.3527 24 6 9.0828 3.6321 3.3084 25 6 8.9907 5.1068 3.7057 26 6 7.0430 1.6953 0.9659 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5401 -0.9352 0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9313 32 1 1.4887 1.6966 2.5459 33 1 3.0988 1.3603 3.2260 34 1 1.7314 3.9743 5.4299 35 1 3.9707 0.2117 -1.1118 36 1 6.2632 -0.5643 -1.3786 37 1 7.8753 -1.5783 0.5994 38 1 9.5701 -0.9223 2.2538 39 1 9.6578 1.3905 3.0847 40 1 8.9470 3.0089 4.1923 41 1 10.0612 3.4338 2.8708 42 1 9.1262 5.7303 2.8219 43 1 8.0123 5.3048 4.1434 44 1 9.7683 5.3361 4.4343 45 1 6.3367 2.4292 0.6068 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861802465.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:27 Heat of formation + Delta-G solvation = -18.407609 kcal Electronic energy + Delta-G solvation = -26440.035631 eV Core-core repulsion = 22809.629176 eV Total energy + Delta-G solvation = -3630.406455 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.24149 -40.51526 -38.54809 -37.10737 -35.22842 -34.48500 -33.62582 -32.90817 -30.97532 -30.37985 -29.38686 -26.88980 -25.93514 -24.78347 -23.67315 -22.98947 -21.73724 -20.90897 -19.71806 -18.79542 -18.58761 -17.84314 -17.07110 -17.03486 -17.03008 -16.72406 -16.23620 -15.99130 -15.46124 -15.00226 -14.87342 -14.43353 -14.37021 -14.16141 -14.16009 -14.02427 -13.59465 -13.41070 -13.30398 -12.97730 -12.95536 -12.79048 -12.63766 -12.53031 -12.44795 -12.25046 -12.19790 -11.77290 -11.70512 -11.64111 -10.79443 -10.66378 -10.50655 -10.29814 -9.41704 -9.13569 -8.99382 -8.23392 -6.37718 -0.13243 0.64280 0.94102 1.30209 1.35594 1.35771 1.42939 2.30178 2.34035 2.57392 2.62312 2.94177 3.05441 3.78182 3.85744 3.92005 3.97572 4.09990 4.13049 4.15922 4.27987 4.29942 4.40441 4.41292 4.47668 4.57330 4.67968 4.78659 4.84218 4.85785 4.98185 5.06629 5.09473 5.12054 5.18597 5.21283 5.34906 5.46567 5.52723 5.56605 5.68443 5.72496 5.78738 5.96463 6.00059 6.06899 6.57446 6.69864 6.86052 7.28495 7.58409 8.83026 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.008561 B = 0.006098 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.809798 B = 4590.729348 C = 7330.976416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.180 4.180 3 C 0.133 3.867 4 N -0.598 5.598 5 C 0.270 3.730 6 C -0.536 4.536 7 H 0.047 0.953 8 C 0.011 3.989 9 N -0.928 5.928 10 Si 0.959 3.041 11 H -0.259 1.259 12 H -0.275 1.275 13 H -0.281 1.281 14 C 0.513 3.487 15 O -0.573 6.573 16 C -0.206 4.206 17 C -0.026 4.026 18 C -0.035 4.035 19 C -0.143 4.143 20 C -0.093 4.093 21 C -0.211 4.211 22 C 0.096 3.904 23 O -0.350 6.350 24 C 0.049 3.951 25 C -0.150 4.150 26 C -0.104 4.104 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.017 0.983 33 H -0.007 1.007 34 H 0.266 0.734 35 H 0.170 0.830 36 H 0.189 0.811 37 H 0.155 0.845 38 H 0.157 0.843 39 H 0.142 0.858 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.041 0.959 44 H 0.110 0.890 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.138 -7.346 -11.842 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.199 4.199 3 C 0.011 3.989 4 N -0.328 5.328 5 C 0.149 3.851 6 C -0.575 4.575 7 H 0.066 0.934 8 C -0.188 4.188 9 N -0.568 5.568 10 Si 0.783 3.217 11 H -0.184 1.184 12 H -0.199 1.199 13 H -0.207 1.207 14 C 0.304 3.696 15 O -0.454 6.454 16 C -0.226 4.226 17 C -0.045 4.045 18 C -0.035 4.035 19 C -0.161 4.161 20 C -0.111 4.111 21 C -0.230 4.230 22 C 0.051 3.949 23 O -0.265 6.265 24 C -0.026 4.026 25 C -0.207 4.207 26 C -0.123 4.123 27 H 0.114 0.886 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.090 0.910 31 H 0.125 0.875 32 H 0.035 0.965 33 H 0.011 0.989 34 H 0.075 0.925 35 H 0.187 0.813 36 H 0.206 0.794 37 H 0.172 0.828 38 H 0.174 0.826 39 H 0.160 0.840 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.129 0.871 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.307 -7.098 -11.200 17.426 hybrid contribution -0.304 1.201 0.957 1.566 sum 11.003 -5.896 -10.242 16.147 Atomic orbital electron populations 1.24036 0.95594 1.02761 0.98682 1.23359 0.96732 0.98309 1.01529 1.20822 0.92570 0.96183 0.89355 1.48159 1.12030 1.59726 1.12845 1.18569 0.93437 0.92447 0.80656 1.21619 1.40183 0.94502 1.01165 0.93429 1.25781 0.94716 1.03429 0.94890 1.70045 1.42991 1.38019 1.05712 0.85597 0.78384 0.79591 0.78080 1.18350 1.19948 1.20708 1.19284 0.81619 0.78227 0.90423 1.90847 1.52794 1.57683 1.44086 1.23350 0.98612 1.04567 0.96047 1.22801 0.90754 0.93417 0.97508 1.18963 0.95611 0.91958 0.96969 1.21424 0.95428 0.99700 0.99587 1.21150 0.98689 0.95114 0.96116 1.21483 1.01850 0.94782 1.04844 1.19092 0.96336 0.84092 0.95352 1.86083 1.55266 1.26425 1.58744 1.22995 0.90324 0.98451 0.90820 1.21825 1.03021 0.93134 1.02745 1.20309 0.96492 0.96938 0.98604 0.88569 0.86486 0.86552 0.91010 0.87471 0.96499 0.98929 0.92476 0.81300 0.79363 0.82759 0.82568 0.84037 0.92389 0.89784 0.91487 0.93955 0.87125 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.32 14.32 67.78 0.97 -3.35 16 2 C -0.18 -5.01 9.85 25.65 0.25 -4.76 16 3 C 0.13 4.40 5.51 85.63 0.47 4.87 16 4 N -0.60 -26.83 2.44 -835.53 -2.04 -28.87 16 5 C 0.27 15.41 5.16 85.63 0.44 15.85 16 6 C -0.54 -32.56 9.39 25.60 0.24 -32.32 16 7 H 0.05 2.90 7.81 -2.91 -0.02 2.87 16 8 C 0.01 0.65 5.46 84.65 0.46 1.11 16 9 N -0.93 -58.39 13.29 21.45 0.28 -58.10 16 10 Si 0.96 47.26 29.54 68.60 2.03 49.28 16 11 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 14 C 0.51 22.43 6.81 86.37 0.59 23.02 16 15 O -0.57 -30.42 12.06 -4.32 -0.05 -30.47 16 16 C -0.21 -6.08 9.05 23.62 0.21 -5.87 16 17 C -0.03 -0.66 9.78 23.84 0.23 -0.43 16 18 C -0.03 -1.14 4.34 -20.16 -0.09 -1.23 16 19 C -0.14 -3.91 9.79 22.58 0.22 -3.69 16 20 C -0.09 -2.48 10.02 22.21 0.22 -2.25 16 21 C -0.21 -6.62 9.04 22.44 0.20 -6.41 16 22 C 0.10 3.78 6.68 22.46 0.15 3.93 16 23 O -0.35 -14.22 10.13 -92.53 -0.94 -15.16 16 24 C 0.05 1.41 5.46 71.98 0.39 1.80 16 25 C -0.15 -3.84 10.28 71.98 0.74 -3.10 16 26 C -0.10 -4.28 6.72 22.68 0.15 -4.13 16 27 H 0.10 2.43 7.84 -2.91 -0.02 2.41 16 28 H 0.12 2.38 8.06 -2.91 -0.02 2.35 16 29 H 0.12 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.07 2.54 7.72 -2.39 -0.02 2.53 16 31 H 0.11 2.79 6.19 -2.39 -0.01 2.78 16 32 H 0.02 0.99 8.07 -2.39 -0.02 0.97 16 33 H -0.01 -0.49 7.42 -2.39 -0.02 -0.51 16 34 H 0.27 15.73 8.31 -92.71 -0.77 14.95 16 35 H 0.17 3.55 6.34 -2.91 -0.02 3.53 16 36 H 0.19 2.69 8.06 -2.91 -0.02 2.66 16 37 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 39 H 0.14 3.61 6.28 -2.91 -0.02 3.59 16 40 H 0.06 1.65 7.65 -2.39 -0.02 1.63 16 41 H 0.08 1.91 7.67 -2.39 -0.02 1.89 16 42 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.09 4.02 7.45 -2.91 -0.02 3.99 16 Total: -1.00 -83.87 379.88 6.12 -77.75 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.96 Total: 22.53 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 5.87 Total: -16.96 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -1.75 Total: -86.97 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -0.99 Total: -45.63 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.28 kcal Total: -83.87 6.12 -77.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861802465.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.342 kcal (2) G-P(sol) polarization free energy of solvation -83.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds