Wall clock time and date at job start Tue Mar 31 2020 11:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47143 * 200.31265 * 3 2 1 5 5 H 1.08999 * 109.47078 * 54.99639 * 4 3 2 6 6 C 1.52993 * 109.46980 * 175.00113 * 4 3 2 7 7 C 1.53004 * 109.47141 * 185.00102 * 6 4 3 8 8 O 1.42903 * 109.47478 * 179.97438 * 7 6 4 9 9 C 1.42898 * 114.00073 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.46784 * 294.99910 * 4 3 2 11 11 C 1.34778 * 119.99980 * 85.00499 * 10 4 3 12 12 O 1.21287 * 119.99885 * 359.97438 * 11 10 4 13 13 C 1.50691 * 120.00087 * 179.97438 * 11 10 4 14 14 C 1.50701 * 109.47564 * 179.97438 * 13 11 10 15 15 C 1.37633 * 120.13174 * 265.00027 * 14 13 11 16 16 C 1.38613 * 120.25324 * 179.97438 * 15 14 13 17 17 C 1.38664 * 120.49687 * 0.02645 * 16 15 14 18 18 C 1.37590 * 120.24805 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.12524 * 84.71844 * 14 13 11 20 20 C 1.41400 * 120.24330 * 0.02562 * 19 14 13 21 21 H 1.08000 * 120.00263 * 329.69549 * 20 19 14 22 22 C 1.39947 * 119.99664 * 149.69785 * 20 19 14 23 23 N 1.30829 * 119.99609 * 162.01412 * 22 20 19 24 24 Si 1.86792 * 120.00322 * 342.01330 * 22 20 19 25 25 H 1.48503 * 109.47084 * 95.40110 * 24 22 20 26 26 H 1.48498 * 109.47280 * 215.39873 * 24 22 20 27 27 H 1.48500 * 109.47274 * 335.40075 * 24 22 20 28 28 H 4.44649 * 5.63393 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47201 * 80.31211 * 3 2 1 30 30 H 1.09004 * 109.47270 * 320.31044 * 3 2 1 31 31 H 1.08997 * 109.47471 * 65.00184 * 6 4 3 32 32 H 1.09001 * 109.47333 * 304.99804 * 6 4 3 33 33 H 1.09002 * 109.47325 * 59.99772 * 7 6 4 34 34 H 1.09001 * 109.46764 * 300.00051 * 7 6 4 35 35 H 1.09005 * 109.46858 * 59.99714 * 9 8 7 36 36 H 1.08993 * 109.47045 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.47353 * 300.00310 * 9 8 7 38 38 H 0.96998 * 119.99662 * 264.99772 * 10 4 3 39 39 H 1.08998 * 109.47014 * 299.99438 * 13 11 10 40 40 H 1.09003 * 109.47471 * 59.98979 * 13 11 10 41 41 H 1.08000 * 119.87419 * 0.02562 * 15 14 13 42 42 H 1.07993 * 119.75141 * 180.02562 * 16 15 14 43 43 H 1.07996 * 119.87127 * 179.97438 * 17 16 15 44 44 H 1.08008 * 120.12680 * 179.97438 * 18 17 16 45 45 H 0.97002 * 119.99600 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3537 0.5008 5 1 2.7206 1.5668 1.4773 6 6 4.6802 1.3125 0.6193 7 6 5.1793 2.6202 1.2370 8 8 6.6035 2.5815 1.3483 9 6 7.1744 3.7620 1.9161 10 7 2.7673 2.4023 -0.4459 11 6 1.5498 2.9735 -0.3570 12 8 0.7752 2.6190 0.5063 13 6 1.1508 4.0524 -1.3304 14 6 -0.2473 4.5196 -1.0173 15 6 -1.3224 3.9783 -1.6848 16 6 -2.6095 4.4057 -1.3985 17 6 -2.8296 5.3821 -0.4387 18 6 -1.7698 5.9380 0.2402 19 6 -0.4592 5.5067 -0.0373 20 6 0.6371 6.0661 0.6587 21 1 1.5235 5.4748 0.8349 22 6 0.5735 7.3861 1.1193 23 7 1.4019 7.7965 2.0450 24 14 -0.6940 8.5620 0.4124 25 1 -1.8932 8.5821 1.2881 26 1 -0.1144 9.9270 0.3355 27 1 -1.0823 8.1118 -0.9484 28 1 -1.0502 -0.0003 -0.0003 29 1 3.0094 -0.1721 -1.0130 30 1 3.0097 -0.7900 0.6563 31 1 5.1184 1.1879 -0.3709 32 1 4.9728 0.4760 1.2539 33 1 4.7411 2.7448 2.2273 34 1 4.8867 3.4567 0.6024 35 1 6.7772 3.9109 2.9203 36 1 8.2578 3.6535 1.9667 37 1 6.9236 4.6219 1.2951 38 1 3.3867 2.6856 -1.1365 39 1 1.8418 4.8912 -1.2463 40 1 1.1824 3.6561 -2.3453 41 1 -1.1626 3.2169 -2.4340 42 1 -3.4472 3.9751 -1.9268 43 1 -3.8366 5.7079 -0.2240 44 1 -1.9434 6.6986 0.9871 45 1 1.3581 8.7115 2.3640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000863783565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:50 Heat of formation + Delta-G solvation = -20.021352 kcal Electronic energy + Delta-G solvation = -26374.615438 eV Core-core repulsion = 22744.139005 eV Total energy + Delta-G solvation = -3630.476433 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -39.56778 -38.12094 -37.56711 -35.90744 -33.55410 -33.01476 -31.96317 -31.24230 -30.27513 -28.94734 -26.89779 -26.42060 -24.83373 -23.58276 -21.57746 -21.18988 -20.34101 -19.35544 -17.83724 -17.31316 -16.62951 -16.52356 -15.93980 -15.76229 -15.41338 -15.19716 -14.83305 -14.34006 -13.93712 -13.81996 -13.70805 -13.33525 -13.22503 -12.86293 -12.64186 -12.57430 -12.09994 -11.86416 -11.69306 -11.62689 -11.36078 -11.27687 -11.10303 -10.93470 -10.77500 -10.69485 -10.22095 -10.06621 -9.79084 -9.69361 -9.67531 -9.52283 -9.09368 -9.03684 -8.49482 -7.55354 -7.45758 -6.90992 -4.44062 2.60639 2.75618 3.14276 3.18984 3.22061 3.28182 3.34242 3.48491 3.68429 3.71716 4.01230 4.55360 4.68865 4.90389 4.97101 5.13261 5.29545 5.33167 5.36680 5.40908 5.48841 5.56512 5.61289 5.67542 5.70971 5.77401 5.88099 5.91172 6.00699 6.13535 6.20605 6.24945 6.33297 6.42233 6.62860 6.76411 6.88929 6.99233 7.08439 7.24511 7.47324 7.70689 7.78690 7.94417 8.02428 8.13260 8.18788 8.39635 8.72679 8.86315 8.97619 10.11335 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010805 B = 0.004983 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.721060 B = 5618.231369 C = 7776.163776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.196 4.196 3 C -0.014 4.014 4 C 0.154 3.846 5 H 0.092 0.908 6 C -0.122 4.122 7 C 0.059 3.941 8 O -0.397 6.397 9 C 0.032 3.968 10 N -0.742 5.742 11 C 0.516 3.484 12 O -0.505 6.505 13 C -0.075 4.075 14 C -0.161 4.161 15 C -0.069 4.069 16 C -0.242 4.242 17 C -0.081 4.081 18 C -0.234 4.234 19 C 0.110 3.890 20 C -0.443 4.443 21 H 0.088 0.912 22 C 0.085 3.915 23 N -0.812 5.812 24 Si 0.909 3.091 25 H -0.272 1.272 26 H -0.293 1.293 27 H -0.244 1.244 28 H 0.208 0.792 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.042 0.958 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.394 0.606 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.021 -9.057 -4.470 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.196 4.196 3 C -0.052 4.052 4 C 0.048 3.952 5 H 0.110 0.890 6 C -0.160 4.160 7 C -0.017 4.017 8 O -0.316 6.316 9 C -0.065 4.065 10 N -0.397 5.397 11 C 0.303 3.697 12 O -0.377 6.377 13 C -0.114 4.114 14 C -0.163 4.163 15 C -0.087 4.087 16 C -0.261 4.261 17 C -0.100 4.100 18 C -0.253 4.253 19 C 0.107 3.893 20 C -0.472 4.472 21 H 0.106 0.894 22 C -0.133 4.133 23 N -0.437 5.437 24 Si 0.736 3.264 25 H -0.198 1.198 26 H -0.220 1.220 27 H -0.167 1.167 28 H 0.225 0.775 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.228 0.772 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.116 0.884 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.695 -9.287 -3.686 12.611 hybrid contribution -0.570 1.086 -0.254 1.253 sum 7.124 -8.201 -3.940 11.555 Atomic orbital electron populations 1.24650 0.95741 0.99256 0.99943 1.22512 0.94042 1.01693 1.01381 1.19046 0.86087 0.97740 1.02348 1.20754 0.92725 0.86714 0.94984 0.88996 1.21761 0.93793 0.97914 1.02509 1.22544 0.80618 0.98142 1.00411 1.87792 1.20722 1.39340 1.83733 1.22729 0.98716 0.87604 0.97422 1.46174 1.17721 1.40563 1.35201 1.20978 0.80621 0.82257 0.85891 1.90715 1.50517 1.61522 1.34996 1.20286 0.97587 0.96828 0.96744 1.19058 0.91754 1.04283 1.01212 1.20408 0.92793 0.97248 0.98245 1.20320 0.95609 1.04955 1.05202 1.20585 0.96913 0.96457 0.95998 1.20990 0.93171 1.06137 1.04969 1.17476 0.92182 0.90636 0.88992 1.19389 1.01944 0.97162 1.28684 0.89384 1.26142 0.95505 0.99621 0.92078 1.69709 1.34558 1.18798 1.20587 0.86355 0.79974 0.77661 0.82429 1.19814 1.22046 1.16732 0.77481 0.89921 0.89397 0.90442 0.89682 0.92942 0.92506 0.93951 0.89851 0.93792 0.77194 0.88476 0.90657 0.89246 0.89117 0.89108 0.88430 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.97 17.91 29.55 0.53 -2.44 16 2 C -0.20 -3.11 11.17 -37.12 -0.41 -3.52 16 3 C -0.01 -0.17 5.39 -29.51 -0.16 -0.33 16 4 C 0.15 1.96 2.24 -67.93 -0.15 1.80 16 5 H 0.09 1.45 7.58 -51.93 -0.39 1.06 16 6 C -0.12 -1.24 5.12 -26.73 -0.14 -1.37 16 7 C 0.06 0.72 5.83 37.16 0.22 0.94 16 8 O -0.40 -4.94 10.70 -35.23 -0.38 -5.32 16 9 C 0.03 0.33 11.01 101.05 1.11 1.44 16 10 N -0.74 -10.43 4.49 -53.81 -0.24 -10.68 16 11 C 0.52 9.71 6.74 -10.99 -0.07 9.64 16 12 O -0.51 -11.57 12.89 5.55 0.07 -11.50 16 13 C -0.07 -1.41 5.19 -29.04 -0.15 -1.56 16 14 C -0.16 -3.69 4.43 -103.91 -0.46 -4.15 16 15 C -0.07 -1.48 9.66 -39.66 -0.38 -1.87 16 16 C -0.24 -5.22 10.05 -39.29 -0.39 -5.62 16 17 C -0.08 -1.85 10.02 -39.66 -0.40 -2.24 16 18 C -0.23 -5.85 7.17 -38.87 -0.28 -6.13 16 19 C 0.11 2.82 5.10 -106.82 -0.55 2.27 16 20 C -0.44 -11.85 8.56 -37.74 -0.32 -12.18 16 21 H 0.09 2.47 6.99 -52.49 -0.37 2.10 16 22 C 0.08 2.22 5.41 -17.34 -0.09 2.12 16 23 N -0.81 -21.60 13.93 55.55 0.77 -20.83 16 24 Si 0.91 20.98 24.51 -169.99 -4.17 16.82 16 25 H -0.27 -6.20 6.71 56.52 0.38 -5.83 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.24 -5.75 6.85 56.52 0.39 -5.36 16 28 H 0.21 3.07 7.80 -54.08 -0.42 2.64 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.39 4.42 8.60 -40.82 -0.35 4.06 16 39 H 0.10 1.84 7.15 -51.93 -0.37 1.47 16 40 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 41 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 42 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 43 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.10 2.45 4.74 -52.48 -0.25 2.20 16 45 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 LS Contribution 374.46 15.07 5.64 5.64 Total: -1.00 -32.01 374.46 -7.20 -39.20 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -6.80 Total: 9.87 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: -2.11 Total: -23.20 kcal Atomic # 7 Polarization: -32.04 SS G_CDS: 0.53 Total: -31.51 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.31 Total: -16.82 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.17 Total: 16.82 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.01 -7.20 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863783565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.183 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.31 seconds