Wall clock time and date at job start Tue Mar 31 2020 11:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47143 * 200.31265 * 3 2 1 5 5 H 1.08999 * 109.47078 * 54.99639 * 4 3 2 6 6 C 1.52993 * 109.46980 * 175.00113 * 4 3 2 7 7 C 1.53004 * 109.47141 * 185.00102 * 6 4 3 8 8 O 1.42903 * 109.47478 * 179.97438 * 7 6 4 9 9 C 1.42898 * 114.00073 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.46784 * 294.99910 * 4 3 2 11 11 C 1.34778 * 119.99980 * 85.00499 * 10 4 3 12 12 O 1.21287 * 119.99885 * 359.97438 * 11 10 4 13 13 C 1.50691 * 120.00087 * 179.97438 * 11 10 4 14 14 C 1.50701 * 109.47564 * 179.97438 * 13 11 10 15 15 C 1.37633 * 120.13174 * 265.00027 * 14 13 11 16 16 C 1.38613 * 120.25324 * 179.97438 * 15 14 13 17 17 C 1.38664 * 120.49687 * 0.02645 * 16 15 14 18 18 C 1.37590 * 120.24805 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.12524 * 84.71844 * 14 13 11 20 20 C 1.41400 * 120.24330 * 0.02562 * 19 14 13 21 21 H 1.08000 * 120.00263 * 329.69549 * 20 19 14 22 22 C 1.39947 * 119.99664 * 149.69785 * 20 19 14 23 23 N 1.30829 * 119.99609 * 162.01412 * 22 20 19 24 24 Si 1.86792 * 120.00322 * 342.01330 * 22 20 19 25 25 H 1.48503 * 109.47084 * 95.40110 * 24 22 20 26 26 H 1.48498 * 109.47280 * 215.39873 * 24 22 20 27 27 H 1.48500 * 109.47274 * 335.40075 * 24 22 20 28 28 H 4.44649 * 5.63393 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47201 * 80.31211 * 3 2 1 30 30 H 1.09004 * 109.47270 * 320.31044 * 3 2 1 31 31 H 1.08997 * 109.47471 * 65.00184 * 6 4 3 32 32 H 1.09001 * 109.47333 * 304.99804 * 6 4 3 33 33 H 1.09002 * 109.47325 * 59.99772 * 7 6 4 34 34 H 1.09001 * 109.46764 * 300.00051 * 7 6 4 35 35 H 1.09005 * 109.46858 * 59.99714 * 9 8 7 36 36 H 1.08993 * 109.47045 * 179.97438 * 9 8 7 37 37 H 1.08996 * 109.47353 * 300.00310 * 9 8 7 38 38 H 0.96998 * 119.99662 * 264.99772 * 10 4 3 39 39 H 1.08998 * 109.47014 * 299.99438 * 13 11 10 40 40 H 1.09003 * 109.47471 * 59.98979 * 13 11 10 41 41 H 1.08000 * 119.87419 * 0.02562 * 15 14 13 42 42 H 1.07993 * 119.75141 * 180.02562 * 16 15 14 43 43 H 1.07996 * 119.87127 * 179.97438 * 17 16 15 44 44 H 1.08008 * 120.12680 * 179.97438 * 18 17 16 45 45 H 0.97002 * 119.99600 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.3537 0.5008 5 1 2.7206 1.5668 1.4773 6 6 4.6802 1.3125 0.6193 7 6 5.1793 2.6202 1.2370 8 8 6.6035 2.5815 1.3483 9 6 7.1744 3.7620 1.9161 10 7 2.7673 2.4023 -0.4459 11 6 1.5498 2.9735 -0.3570 12 8 0.7752 2.6190 0.5063 13 6 1.1508 4.0524 -1.3304 14 6 -0.2473 4.5196 -1.0173 15 6 -1.3224 3.9783 -1.6848 16 6 -2.6095 4.4057 -1.3985 17 6 -2.8296 5.3821 -0.4387 18 6 -1.7698 5.9380 0.2402 19 6 -0.4592 5.5067 -0.0373 20 6 0.6371 6.0661 0.6587 21 1 1.5235 5.4748 0.8349 22 6 0.5735 7.3861 1.1193 23 7 1.4019 7.7965 2.0450 24 14 -0.6940 8.5620 0.4124 25 1 -1.8932 8.5821 1.2881 26 1 -0.1144 9.9270 0.3355 27 1 -1.0823 8.1118 -0.9484 28 1 -1.0502 -0.0003 -0.0003 29 1 3.0094 -0.1721 -1.0130 30 1 3.0097 -0.7900 0.6563 31 1 5.1184 1.1879 -0.3709 32 1 4.9728 0.4760 1.2539 33 1 4.7411 2.7448 2.2273 34 1 4.8867 3.4567 0.6024 35 1 6.7772 3.9109 2.9203 36 1 8.2578 3.6535 1.9667 37 1 6.9236 4.6219 1.2951 38 1 3.3867 2.6856 -1.1365 39 1 1.8418 4.8912 -1.2463 40 1 1.1824 3.6561 -2.3453 41 1 -1.1626 3.2169 -2.4340 42 1 -3.4472 3.9751 -1.9268 43 1 -3.8366 5.7079 -0.2240 44 1 -1.9434 6.6986 0.9871 45 1 1.3581 8.7115 2.3640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000863783565.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:44 Heat of formation + Delta-G solvation = -40.264372 kcal Electronic energy + Delta-G solvation = -26375.493241 eV Core-core repulsion = 22744.139005 eV Total energy + Delta-G solvation = -3631.354236 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 7.45 seconds Orbital eigenvalues (eV) -40.96457 -39.56190 -38.83239 -37.15318 -35.47337 -34.24515 -33.47709 -32.53957 -32.11994 -30.01982 -28.49766 -27.33281 -26.66966 -24.64366 -23.23700 -22.60099 -21.67792 -20.95193 -19.23869 -18.98846 -17.87031 -17.73940 -17.38687 -17.00316 -16.64217 -16.53051 -16.09872 -16.00830 -15.47366 -15.41543 -14.87429 -14.71047 -14.53874 -14.23581 -14.06247 -13.83127 -13.79213 -13.54167 -13.11710 -12.72865 -12.68043 -12.63638 -12.51724 -12.44658 -12.19610 -11.99509 -11.95433 -11.53106 -11.36025 -11.28223 -10.96367 -10.94478 -10.67201 -10.54975 -9.76256 -9.38442 -9.26155 -8.85925 -6.42830 0.81559 0.91815 1.26577 1.39138 1.48348 1.91309 2.07736 2.11945 2.13880 2.42600 2.66986 2.75965 3.57044 3.63927 3.95360 4.03540 4.11876 4.17357 4.30247 4.35899 4.40649 4.43462 4.48208 4.50602 4.55565 4.60454 4.67353 4.75565 4.78741 4.82651 4.87448 4.95135 4.98951 5.05207 5.17903 5.19997 5.28125 5.38991 5.68776 5.71403 5.88547 5.97213 6.07298 6.14369 6.31226 6.47435 6.75684 6.83629 6.93110 6.93638 7.58848 8.21870 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.010805 B = 0.004983 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.721060 B = 5618.231369 C = 7776.163776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.198 4.198 3 C -0.014 4.014 4 C 0.157 3.843 5 H 0.055 0.945 6 C -0.107 4.107 7 C 0.058 3.942 8 O -0.403 6.403 9 C 0.025 3.975 10 N -0.724 5.724 11 C 0.515 3.485 12 O -0.553 6.553 13 C -0.076 4.076 14 C -0.164 4.164 15 C -0.078 4.078 16 C -0.229 4.229 17 C -0.093 4.093 18 C -0.257 4.257 19 C 0.084 3.916 20 C -0.466 4.466 21 H 0.058 0.942 22 C 0.049 3.951 23 N -0.853 5.853 24 Si 0.961 3.039 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.252 1.252 28 H 0.213 0.787 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.039 0.961 36 H 0.107 0.893 37 H 0.041 0.959 38 H 0.411 0.589 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.119 0.881 44 H 0.088 0.912 45 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.264 -10.578 -6.778 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.198 4.198 3 C -0.052 4.052 4 C 0.052 3.948 5 H 0.073 0.927 6 C -0.145 4.145 7 C -0.019 4.019 8 O -0.322 6.322 9 C -0.071 4.071 10 N -0.379 5.379 11 C 0.303 3.697 12 O -0.429 6.429 13 C -0.116 4.116 14 C -0.166 4.166 15 C -0.096 4.096 16 C -0.248 4.248 17 C -0.111 4.111 18 C -0.276 4.276 19 C 0.082 3.918 20 C -0.496 4.496 21 H 0.076 0.924 22 C -0.165 4.165 23 N -0.480 5.480 24 Si 0.785 3.215 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.175 1.175 28 H 0.229 0.771 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.125 0.875 37 H 0.059 0.941 38 H 0.248 0.752 39 H 0.109 0.891 40 H 0.131 0.869 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.137 0.863 44 H 0.106 0.894 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.985 -10.814 -6.017 14.728 hybrid contribution -0.681 1.410 0.394 1.614 sum 7.305 -9.404 -5.624 13.169 Atomic orbital electron populations 1.25114 0.96729 1.00409 1.01377 1.23426 0.95442 1.00709 1.00256 1.19275 0.83703 0.97525 1.04657 1.20779 0.94380 0.86766 0.92891 0.92668 1.21672 0.91356 0.97257 1.04166 1.22532 0.80830 0.99104 0.99397 1.87770 1.20442 1.40155 1.83854 1.22899 1.00087 0.87028 0.97061 1.45982 1.16397 1.40098 1.35443 1.20907 0.81562 0.82112 0.85166 1.90700 1.52327 1.63169 1.36744 1.20333 0.95482 0.96935 0.98838 1.19518 0.94253 1.02858 0.99941 1.20832 0.92477 0.97624 0.98637 1.20841 0.96846 1.03289 1.03797 1.20949 0.97647 0.96587 0.95965 1.21130 0.93875 1.06888 1.05749 1.17710 0.92097 0.91980 0.90016 1.19300 1.01749 0.97666 1.30897 0.92380 1.26733 0.97009 1.00542 0.92211 1.69742 1.36474 1.19622 1.22114 0.85556 0.78161 0.76572 0.81163 1.19641 1.20498 1.17513 0.77055 0.87061 0.86509 0.87859 0.87689 0.94838 0.93692 0.94279 0.87452 0.94073 0.75211 0.89110 0.86890 0.86018 0.85604 0.86311 0.89383 0.89999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -7.26 17.91 74.32 1.33 -5.93 16 2 C -0.20 -6.06 11.17 31.13 0.35 -5.71 16 3 C -0.01 -0.30 5.39 28.79 0.16 -0.14 16 4 C 0.16 3.79 2.24 44.99 0.10 3.89 16 5 H 0.06 1.78 7.58 -2.39 -0.02 1.76 16 6 C -0.11 -1.91 5.12 30.59 0.16 -1.75 16 7 C 0.06 1.39 5.83 71.98 0.42 1.81 16 8 O -0.40 -9.54 10.70 -148.98 -1.59 -11.13 16 9 C 0.03 0.52 11.01 113.37 1.25 1.76 16 10 N -0.72 -19.57 4.49 -442.53 -1.99 -21.56 16 11 C 0.52 19.37 6.74 87.65 0.59 19.96 16 12 O -0.55 -25.92 12.89 -3.05 -0.04 -25.96 16 13 C -0.08 -2.83 5.19 29.10 0.15 -2.68 16 14 C -0.16 -7.42 4.43 -19.41 -0.09 -7.50 16 15 C -0.08 -3.16 9.66 22.22 0.21 -2.94 16 16 C -0.23 -9.17 10.05 22.46 0.23 -8.95 16 17 C -0.09 -4.07 10.02 22.22 0.22 -3.85 16 18 C -0.26 -12.93 7.17 22.73 0.16 -12.77 16 19 C 0.08 4.40 5.10 -21.29 -0.11 4.29 16 20 C -0.47 -26.13 8.56 23.46 0.20 -25.93 16 21 H 0.06 3.48 6.99 -2.91 -0.02 3.46 16 22 C 0.05 2.66 5.41 85.26 0.46 3.12 16 23 N -0.85 -47.40 13.93 21.83 0.30 -47.10 16 24 Si 0.96 44.20 24.51 68.60 1.68 45.88 16 25 H -0.27 -12.20 6.71 99.48 0.67 -11.53 16 26 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 27 H -0.25 -11.71 6.85 99.48 0.68 -11.03 16 28 H 0.21 6.36 7.80 -4.41 -0.03 6.33 16 29 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 33 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.04 1.16 7.75 -2.39 -0.02 1.14 16 35 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 38 H 0.41 8.35 8.60 -92.71 -0.80 7.55 16 39 H 0.09 3.49 7.15 -2.39 -0.02 3.47 16 40 H 0.11 3.25 8.05 -2.39 -0.02 3.23 16 41 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 42 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 43 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 44 H 0.09 4.49 4.74 -2.91 -0.01 4.48 16 45 H 0.29 14.60 8.30 -92.71 -0.77 13.83 16 Total: -1.00 -72.81 374.46 4.28 -68.53 By element: Atomic # 1 Polarization: 34.57 SS G_CDS: 0.12 Total: 34.69 kcal Atomic # 6 Polarization: -49.14 SS G_CDS: 5.79 Total: -43.34 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -1.68 Total: -68.66 kcal Atomic # 8 Polarization: -35.46 SS G_CDS: -1.63 Total: -37.09 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.68 Total: 45.88 kcal Total: -72.81 4.28 -68.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000863783565.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.262 kcal (2) G-P(sol) polarization free energy of solvation -72.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.45 seconds