Wall clock time and date at job start Tue Mar 31 2020 11:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34716 * 117.00136 * 2 1 4 4 O 1.21468 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.47730 * 119.99891 * 180.02562 * 3 2 1 6 6 C 1.39654 * 120.24729 * 0.02562 * 5 3 2 7 7 C 1.37689 * 119.70694 * 180.02562 * 6 5 3 8 8 C 1.38909 * 120.59848 * 0.02562 * 7 6 5 9 9 C 1.38013 * 119.95195 * 359.84899 * 8 7 6 10 10 C 1.38397 * 119.99518 * 0.20396 * 9 8 7 11 11 C 1.50748 * 121.64688 * 180.25550 * 9 8 7 12 12 C 1.52885 * 109.97228 * 343.06265 * 11 9 8 13 13 N 1.47161 * 108.66433 * 50.31235 * 12 11 9 14 14 C 1.46900 * 111.00057 * 165.35194 * 13 12 11 15 15 C 1.53003 * 109.46674 * 176.34117 * 14 13 12 16 16 C 1.50698 * 115.55115 * 294.15340 * 15 14 13 17 17 H 1.07998 * 120.00078 * 144.75935 * 16 15 14 18 18 C 1.37877 * 119.99940 * 324.75236 * 16 15 14 19 19 N 1.31513 * 120.00128 * 346.84040 * 18 16 15 20 20 Si 1.86802 * 119.99717 * 166.82884 * 18 16 15 21 21 H 1.48490 * 109.47271 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46626 * 120.00712 * 20 18 16 23 23 H 1.48507 * 109.47041 * 240.00280 * 20 18 16 24 24 C 1.53006 * 117.49349 * 148.48421 * 15 14 13 25 25 C 1.52997 * 117.49987 * 79.82732 * 15 14 13 26 26 C 1.46526 * 110.29663 * 288.97525 * 13 12 11 27 27 H 1.09008 * 109.46814 * 60.00056 * 1 2 3 28 28 H 1.09001 * 109.47423 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47108 * 300.00293 * 1 2 3 30 30 H 1.08005 * 120.14611 * 0.02892 * 6 5 3 31 31 H 1.08005 * 119.70094 * 180.02562 * 7 6 5 32 32 H 1.08007 * 119.88127 * 179.90627 * 10 9 8 33 33 H 1.08991 * 109.38807 * 222.90739 * 11 9 8 34 34 H 1.09002 * 109.30127 * 103.15956 * 11 9 8 35 35 H 1.09007 * 109.63534 * 170.11136 * 12 11 9 36 36 H 1.08998 * 109.63524 * 290.51037 * 12 11 9 37 37 H 1.08998 * 109.47191 * 296.33494 * 14 13 12 38 38 H 1.08995 * 109.47313 * 56.34226 * 14 13 12 39 39 H 0.96999 * 119.99993 * 185.01527 * 19 18 16 40 40 H 1.08997 * 117.50140 * 0.02562 * 24 15 14 41 41 H 1.09007 * 117.49264 * 145.02080 * 24 15 14 42 42 H 1.08995 * 117.49938 * 214.97407 * 25 15 14 43 43 H 1.09005 * 117.49966 * 359.97438 * 25 15 14 44 44 H 1.09006 * 109.08361 * 292.06793 * 26 13 12 45 45 H 1.08991 * 109.27845 * 172.66822 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2191 -0.0005 5 6 3.5389 1.2776 -0.0006 6 6 4.3045 0.1096 -0.0017 7 6 5.6787 0.1946 -0.0016 8 6 6.3107 1.4316 0.0000 9 6 5.5593 2.5892 -0.0016 10 6 4.1772 2.5170 -0.0005 11 6 6.2051 3.9514 -0.0056 12 6 7.6714 3.8353 0.4111 13 7 8.3086 2.7828 -0.3963 14 6 9.7724 2.8563 -0.2966 15 6 10.3953 1.6944 -1.0730 16 6 10.1177 0.3202 -0.5203 17 1 9.9868 -0.5156 -1.1917 18 6 10.0310 0.1299 0.8425 19 7 10.4399 1.0709 1.6652 20 14 9.3322 -1.4644 1.5202 21 1 8.9470 -2.3538 0.3953 22 1 10.3584 -2.1391 2.3552 23 1 8.1363 -1.1679 2.3492 24 6 11.7589 1.9314 -1.7254 25 6 10.5012 1.8365 -2.5927 26 6 7.8171 1.4634 0.0095 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.8207 -0.8561 -0.0025 31 1 6.2707 -0.7088 -0.0029 32 1 3.5909 3.4241 -0.0001 33 1 5.6807 4.6025 0.6936 34 1 6.1463 4.3750 -1.0083 35 1 8.1774 4.7854 0.2391 36 1 7.7324 3.5739 1.4675 37 1 10.1182 3.8008 -0.7166 38 1 10.0688 2.7940 0.7504 39 1 10.4470 0.9094 2.6217 40 1 12.2123 2.9147 -1.6010 41 1 12.4550 1.0930 -1.7551 42 1 10.3705 0.9360 -3.1927 43 1 10.1266 2.7575 -3.0395 44 1 8.1753 1.2434 1.0152 45 1 8.1971 0.7100 -0.6804 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880351132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:22 Heat of formation + Delta-G solvation = -17.348467 kcal Electronic energy + Delta-G solvation = -26854.602169 eV Core-core repulsion = 23224.241642 eV Total energy + Delta-G solvation = -3630.360528 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.55591 -39.48559 -37.52671 -36.42278 -35.37776 -32.84617 -32.00610 -31.46780 -28.86221 -28.09004 -26.22791 -25.94877 -23.54003 -22.96656 -21.93128 -21.20172 -20.95443 -19.22530 -18.95657 -17.47706 -17.01787 -16.37894 -16.30260 -15.53299 -15.12071 -14.80233 -14.61303 -14.22462 -14.00701 -13.82468 -13.53073 -13.25475 -13.23317 -12.85063 -12.59589 -12.39158 -12.23952 -12.02609 -11.57192 -11.50754 -11.15168 -11.05395 -10.91674 -10.88205 -10.75170 -10.62460 -10.48347 -10.26957 -10.20953 -10.06702 -9.31339 -9.03451 -8.71780 -8.62162 -8.31554 -8.28949 -7.17892 -6.15419 -4.17363 0.92228 1.60712 2.66328 2.66696 3.10572 3.23090 3.24285 3.99776 4.17951 4.68444 4.76586 4.91234 4.94106 4.97261 5.01966 5.13512 5.29001 5.33701 5.46497 5.53258 5.56916 5.74123 5.83120 5.92028 6.11020 6.13268 6.19469 6.26158 6.26667 6.40315 6.44295 6.46753 6.56502 6.66361 6.73268 6.76630 6.83234 6.88258 6.94573 7.06816 7.14174 7.34744 7.38202 7.45599 7.74576 7.85642 8.10122 8.18793 8.32883 8.71585 9.30053 10.75097 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.004174 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.400379 B = 6707.017437 C = 7613.744257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.514 3.486 4 O -0.516 6.516 5 C -0.152 4.152 6 C -0.065 4.065 7 C -0.137 4.137 8 C -0.017 4.017 9 C -0.092 4.092 10 C -0.053 4.053 11 C -0.070 4.070 12 C 0.049 3.951 13 N -0.521 5.521 14 C 0.080 3.920 15 C 0.052 3.948 16 C -0.486 4.486 17 H 0.065 0.935 18 C 0.074 3.926 19 N -0.874 5.874 20 Si 0.869 3.131 21 H -0.265 1.265 22 H -0.281 1.281 23 H -0.275 1.275 24 C -0.202 4.202 25 C -0.199 4.199 26 C 0.069 3.931 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.061 0.939 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.096 0.904 39 H 0.263 0.737 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.185 0.447 -1.064 12.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.361 3.639 4 O -0.406 6.406 5 C -0.153 4.153 6 C -0.083 4.083 7 C -0.156 4.156 8 C -0.018 4.018 9 C -0.092 4.092 10 C -0.071 4.071 11 C -0.107 4.107 12 C -0.080 4.080 13 N -0.245 5.245 14 C -0.046 4.046 15 C 0.052 3.948 16 C -0.523 4.523 17 H 0.083 0.917 18 C -0.129 4.129 19 N -0.511 5.511 20 Si 0.695 3.305 21 H -0.189 1.189 22 H -0.207 1.207 23 H -0.200 1.200 24 C -0.241 4.241 25 C -0.237 4.237 26 C -0.058 4.058 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.080 0.920 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.050 0.950 37 H 0.053 0.947 38 H 0.114 0.886 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.571 0.874 -1.343 12.673 hybrid contribution -0.306 -0.940 1.224 1.573 sum -12.877 -0.066 -0.119 12.877 Atomic orbital electron populations 1.23240 0.76422 1.03545 1.02474 1.86564 1.23210 1.32996 1.84509 1.21343 0.89302 0.81135 0.72139 1.90795 1.66952 1.36060 1.46775 1.18813 0.88167 0.95204 1.13135 1.21253 0.93742 0.97453 0.95900 1.21112 0.94010 0.97998 1.02449 1.20792 0.98257 0.91953 0.90787 1.19603 0.92031 0.95895 1.01687 1.21125 0.93984 0.96303 0.95688 1.20510 0.95466 0.92660 1.02098 1.22057 0.93678 0.96625 0.95645 1.62276 1.07564 1.02206 1.52423 1.21915 0.84354 0.94866 1.03513 1.18932 0.93078 0.94596 0.88225 1.20556 1.47754 0.92661 0.91302 0.91659 1.24962 0.94814 0.96129 0.96969 1.69813 1.45250 1.32601 1.03436 0.86890 0.79713 0.84046 0.79809 1.18935 1.20707 1.19998 1.22928 0.92577 0.99740 1.08826 1.22796 1.03768 1.00328 0.96765 1.22207 0.85879 0.94269 1.03413 0.91951 0.88135 0.91983 0.85011 0.85324 0.85208 0.91148 0.90151 0.91238 0.95008 0.94743 0.88602 0.92612 0.91860 0.90593 0.91030 0.91182 0.90942 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.60 9.83 -40.54 -0.40 -5.00 16 3 C 0.51 7.79 7.90 34.61 0.27 8.07 16 4 O -0.52 -8.69 16.14 -19.24 -0.31 -9.00 16 5 C -0.15 -2.37 5.87 -105.05 -0.62 -2.99 16 6 C -0.07 -0.98 9.62 -39.25 -0.38 -1.36 16 7 C -0.14 -2.32 9.62 -39.53 -0.38 -2.70 16 8 C -0.02 -0.32 5.81 -104.47 -0.61 -0.92 16 9 C -0.09 -1.55 5.77 -104.62 -0.60 -2.15 16 10 C -0.05 -0.83 9.20 -39.09 -0.36 -1.19 16 11 C -0.07 -1.07 5.94 -27.92 -0.17 -1.23 16 12 C 0.05 0.85 5.56 -3.74 -0.02 0.83 16 13 N -0.52 -10.54 4.78 -236.26 -1.13 -11.67 16 14 C 0.08 1.76 4.71 -3.82 -0.02 1.75 16 15 C 0.05 1.20 1.73 -155.66 -0.27 0.93 16 16 C -0.49 -11.82 6.01 -34.44 -0.21 -12.02 16 17 H 0.07 1.61 7.85 -52.49 -0.41 1.20 16 18 C 0.07 1.77 2.84 -17.82 -0.05 1.72 16 19 N -0.87 -21.86 10.13 55.43 0.56 -21.30 16 20 Si 0.87 18.83 28.78 -169.99 -4.89 13.94 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 C -0.20 -4.39 9.92 -26.69 -0.26 -4.65 16 25 C -0.20 -4.19 9.96 -26.69 -0.27 -4.45 16 26 C 0.07 1.43 3.27 -5.19 -0.02 1.41 16 27 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.13 1.69 7.63 -52.48 -0.40 1.29 16 31 H 0.13 2.09 8.06 -52.48 -0.42 1.67 16 32 H 0.13 1.90 7.64 -52.48 -0.40 1.50 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.11 8.03 -51.92 -0.42 0.69 16 36 H 0.03 0.59 8.05 -51.93 -0.42 0.17 16 37 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 38 H 0.10 2.33 5.43 -51.93 -0.28 2.05 16 39 H 0.26 6.39 8.32 -40.82 -0.34 6.05 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.67 8.14 -51.92 -0.42 1.24 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.07 1.67 5.14 -51.93 -0.27 1.40 16 45 H 0.14 3.13 5.01 -51.93 -0.26 2.87 16 LS Contribution 357.77 15.07 5.39 5.39 Total: -1.00 -26.40 357.77 -10.30 -36.70 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.64 Total: 8.51 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -2.88 Total: -17.57 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: -0.57 Total: -32.97 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.71 Total: -14.00 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.89 Total: 13.94 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -26.40 -10.30 -36.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880351132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.348 kcal (2) G-P(sol) polarization free energy of solvation -26.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds