Wall clock time and date at job start Tue Mar 31 2020 11:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34716 * 117.00136 * 2 1 4 4 O 1.21468 * 120.00103 * 359.97438 * 3 2 1 5 5 C 1.47730 * 119.99891 * 180.02562 * 3 2 1 6 6 C 1.39654 * 120.24729 * 0.02562 * 5 3 2 7 7 C 1.37689 * 119.70694 * 180.02562 * 6 5 3 8 8 C 1.38909 * 120.59848 * 0.02562 * 7 6 5 9 9 C 1.38013 * 119.95195 * 359.84899 * 8 7 6 10 10 C 1.38397 * 119.99518 * 0.20396 * 9 8 7 11 11 C 1.50748 * 121.64688 * 180.25550 * 9 8 7 12 12 C 1.52885 * 109.97228 * 343.06265 * 11 9 8 13 13 N 1.47161 * 108.66433 * 50.31235 * 12 11 9 14 14 C 1.46900 * 111.00057 * 165.35194 * 13 12 11 15 15 C 1.53003 * 109.46674 * 176.34117 * 14 13 12 16 16 C 1.50698 * 115.55115 * 294.15340 * 15 14 13 17 17 H 1.07998 * 120.00078 * 144.75935 * 16 15 14 18 18 C 1.37877 * 119.99940 * 324.75236 * 16 15 14 19 19 N 1.31513 * 120.00128 * 346.84040 * 18 16 15 20 20 Si 1.86802 * 119.99717 * 166.82884 * 18 16 15 21 21 H 1.48490 * 109.47271 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46626 * 120.00712 * 20 18 16 23 23 H 1.48507 * 109.47041 * 240.00280 * 20 18 16 24 24 C 1.53006 * 117.49349 * 148.48421 * 15 14 13 25 25 C 1.52997 * 117.49987 * 79.82732 * 15 14 13 26 26 C 1.46526 * 110.29663 * 288.97525 * 13 12 11 27 27 H 1.09008 * 109.46814 * 60.00056 * 1 2 3 28 28 H 1.09001 * 109.47423 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47108 * 300.00293 * 1 2 3 30 30 H 1.08005 * 120.14611 * 0.02892 * 6 5 3 31 31 H 1.08005 * 119.70094 * 180.02562 * 7 6 5 32 32 H 1.08007 * 119.88127 * 179.90627 * 10 9 8 33 33 H 1.08991 * 109.38807 * 222.90739 * 11 9 8 34 34 H 1.09002 * 109.30127 * 103.15956 * 11 9 8 35 35 H 1.09007 * 109.63534 * 170.11136 * 12 11 9 36 36 H 1.08998 * 109.63524 * 290.51037 * 12 11 9 37 37 H 1.08998 * 109.47191 * 296.33494 * 14 13 12 38 38 H 1.08995 * 109.47313 * 56.34226 * 14 13 12 39 39 H 0.96999 * 119.99993 * 185.01527 * 19 18 16 40 40 H 1.08997 * 117.50140 * 0.02562 * 24 15 14 41 41 H 1.09007 * 117.49264 * 145.02080 * 24 15 14 42 42 H 1.08995 * 117.49938 * 214.97407 * 25 15 14 43 43 H 1.09005 * 117.49966 * 359.97438 * 25 15 14 44 44 H 1.09006 * 109.08361 * 292.06793 * 26 13 12 45 45 H 1.08991 * 109.27845 * 172.66822 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4021 2.2191 -0.0005 5 6 3.5389 1.2776 -0.0006 6 6 4.3045 0.1096 -0.0017 7 6 5.6787 0.1946 -0.0016 8 6 6.3107 1.4316 0.0000 9 6 5.5593 2.5892 -0.0016 10 6 4.1772 2.5170 -0.0005 11 6 6.2051 3.9514 -0.0056 12 6 7.6714 3.8353 0.4111 13 7 8.3086 2.7828 -0.3963 14 6 9.7724 2.8563 -0.2966 15 6 10.3953 1.6944 -1.0730 16 6 10.1177 0.3202 -0.5203 17 1 9.9868 -0.5156 -1.1917 18 6 10.0310 0.1299 0.8425 19 7 10.4399 1.0709 1.6652 20 14 9.3322 -1.4644 1.5202 21 1 8.9470 -2.3538 0.3953 22 1 10.3584 -2.1391 2.3552 23 1 8.1363 -1.1679 2.3492 24 6 11.7589 1.9314 -1.7254 25 6 10.5012 1.8365 -2.5927 26 6 7.8171 1.4634 0.0095 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.8207 -0.8561 -0.0025 31 1 6.2707 -0.7088 -0.0029 32 1 3.5909 3.4241 -0.0001 33 1 5.6807 4.6025 0.6936 34 1 6.1463 4.3750 -1.0083 35 1 8.1774 4.7854 0.2391 36 1 7.7324 3.5739 1.4675 37 1 10.1182 3.8008 -0.7166 38 1 10.0688 2.7940 0.7504 39 1 10.4470 0.9094 2.6217 40 1 12.2123 2.9147 -1.6010 41 1 12.4550 1.0930 -1.7551 42 1 10.3705 0.9360 -3.1927 43 1 10.1266 2.7575 -3.0395 44 1 8.1753 1.2434 1.0152 45 1 8.1971 0.7100 -0.6804 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880351132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:21 Heat of formation + Delta-G solvation = -29.658627 kcal Electronic energy + Delta-G solvation = -26855.135978 eV Core-core repulsion = 23224.241642 eV Total energy + Delta-G solvation = -3630.894336 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.72620 -40.80419 -39.08004 -37.54270 -36.88180 -34.53830 -33.50801 -32.81122 -30.20793 -29.07955 -27.78758 -27.57883 -24.92564 -24.31304 -23.26339 -22.84680 -22.29679 -20.87120 -20.38664 -18.65881 -18.19529 -18.02264 -17.40315 -16.97889 -16.67670 -16.39239 -16.00083 -15.59336 -15.44252 -15.16674 -14.91233 -14.52718 -14.50908 -14.25367 -14.03929 -13.72954 -13.64052 -13.16143 -13.10097 -12.94446 -12.72859 -12.61510 -12.44145 -12.31607 -12.17451 -11.97891 -11.93465 -11.83705 -11.66801 -11.41766 -11.07328 -10.82610 -10.47210 -10.09962 -9.89440 -9.60586 -8.85042 -7.99235 -6.06613 -0.33630 0.35549 1.34504 1.43384 1.44964 1.49322 1.65961 2.37517 2.72877 2.96106 3.26531 3.65203 3.73456 3.81842 3.88925 4.00557 4.15813 4.26392 4.32121 4.33139 4.34646 4.50875 4.55784 4.60016 4.69202 4.72209 4.80914 4.88430 4.90708 5.00053 5.02032 5.05474 5.08608 5.16581 5.21196 5.23452 5.26193 5.33908 5.43550 5.45905 5.58892 5.62923 5.70553 5.91747 6.04185 6.47311 6.48493 6.57915 6.63051 6.84464 7.42318 8.88391 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.004174 C = 0.003677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.400379 B = 6707.017437 C = 7613.744257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.519 3.481 4 O -0.535 6.535 5 C -0.154 4.154 6 C -0.056 4.056 7 C -0.146 4.146 8 C -0.044 4.044 9 C -0.096 4.096 10 C -0.052 4.052 11 C -0.064 4.064 12 C 0.048 3.952 13 N -0.523 5.523 14 C 0.089 3.911 15 C 0.028 3.972 16 C -0.495 4.495 17 H 0.054 0.946 18 C 0.050 3.950 19 N -0.894 5.894 20 Si 0.910 3.090 21 H -0.258 1.258 22 H -0.287 1.287 23 H -0.272 1.272 24 C -0.203 4.203 25 C -0.183 4.183 26 C 0.084 3.916 27 H 0.064 0.936 28 H 0.135 0.865 29 H 0.063 0.937 30 H 0.157 0.843 31 H 0.128 0.872 32 H 0.144 0.856 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.015 0.985 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.260 0.740 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.044 0.956 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.397 0.520 -1.543 14.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.366 3.634 4 O -0.427 6.427 5 C -0.155 4.155 6 C -0.074 4.074 7 C -0.164 4.164 8 C -0.045 4.045 9 C -0.096 4.096 10 C -0.070 4.070 11 C -0.101 4.101 12 C -0.080 4.080 13 N -0.247 5.247 14 C -0.039 4.039 15 C 0.028 3.972 16 C -0.532 4.532 17 H 0.072 0.928 18 C -0.150 4.150 19 N -0.532 5.532 20 Si 0.735 3.265 21 H -0.182 1.182 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.241 4.241 25 C -0.220 4.220 26 C -0.043 4.043 27 H 0.083 0.917 28 H 0.153 0.847 29 H 0.082 0.918 30 H 0.174 0.826 31 H 0.146 0.854 32 H 0.162 0.838 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.033 0.967 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.794 0.930 -1.834 14.936 hybrid contribution 0.283 -0.991 1.350 1.699 sum -14.511 -0.061 -0.484 14.519 Atomic orbital electron populations 1.23612 0.74138 1.05951 1.02727 1.86545 1.25393 1.31593 1.83827 1.21201 0.89002 0.81529 0.71711 1.90787 1.67292 1.36850 1.47785 1.19027 0.88909 0.95345 1.12189 1.21435 0.92844 0.98528 0.94603 1.21197 0.94937 0.97528 1.02742 1.20703 0.97006 0.93425 0.93332 1.19755 0.92548 0.96000 1.01320 1.21245 0.93497 0.97084 0.95151 1.20537 0.93748 0.92448 1.03400 1.22150 0.95294 0.96236 0.94347 1.62281 1.06567 1.02773 1.53034 1.21714 0.85646 0.94731 1.01790 1.19057 0.94158 0.94418 0.89585 1.20628 1.47973 0.93116 0.91449 0.92824 1.25310 0.94750 0.97956 0.96986 1.69925 1.46268 1.33706 1.03277 0.86256 0.79044 0.81846 0.79339 1.18190 1.21290 1.19775 1.22930 0.92349 1.00051 1.08810 1.22764 1.02749 1.00865 0.95622 1.21767 0.87608 0.93902 1.01019 0.91708 0.84724 0.91779 0.82554 0.85359 0.83838 0.88431 0.89057 0.89740 0.96691 0.94016 0.91137 0.92968 0.90698 0.91366 0.90996 0.89902 0.93825 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.63 16 2 O -0.36 -8.22 9.83 -56.26 -0.55 -8.78 16 3 C 0.52 14.48 7.90 70.33 0.56 15.04 16 4 O -0.54 -16.87 16.14 19.94 0.32 -16.55 16 5 C -0.15 -4.47 5.87 -20.14 -0.12 -4.59 16 6 C -0.06 -1.58 9.62 22.48 0.22 -1.37 16 7 C -0.15 -4.81 9.62 22.30 0.21 -4.60 16 8 C -0.04 -1.61 5.81 -19.77 -0.11 -1.73 16 9 C -0.10 -3.10 5.77 -19.86 -0.11 -3.21 16 10 C -0.05 -1.52 9.20 22.59 0.21 -1.31 16 11 C -0.06 -1.83 5.94 29.83 0.18 -1.66 16 12 C 0.05 1.65 5.56 86.22 0.48 2.13 16 13 N -0.52 -21.18 4.78 -901.39 -4.31 -25.49 16 14 C 0.09 3.93 4.71 86.30 0.41 4.33 16 15 C 0.03 1.31 1.73 -52.93 -0.09 1.22 16 16 C -0.49 -24.59 6.01 25.60 0.15 -24.44 16 17 H 0.05 2.72 7.85 -2.91 -0.02 2.70 16 18 C 0.05 2.49 2.84 84.65 0.24 2.73 16 19 N -0.89 -45.98 10.13 21.45 0.22 -45.76 16 20 Si 0.91 39.26 28.78 68.60 1.97 41.23 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 22 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 C -0.20 -8.77 9.92 30.62 0.30 -8.46 16 25 C -0.18 -7.57 9.96 30.62 0.30 -7.27 16 26 C 0.08 3.56 3.27 85.62 0.28 3.84 16 27 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.13 1.12 8.14 -2.39 -0.02 1.11 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.16 3.57 7.63 -2.91 -0.02 3.55 16 31 H 0.13 4.15 8.06 -2.91 -0.02 4.12 16 32 H 0.14 3.82 7.64 -2.91 -0.02 3.79 16 33 H 0.10 2.26 8.14 -2.39 -0.02 2.25 16 34 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.08 2.60 8.03 -2.38 -0.02 2.58 16 36 H 0.01 0.56 8.05 -2.39 -0.02 0.54 16 37 H 0.04 1.74 8.09 -2.39 -0.02 1.72 16 38 H 0.07 3.52 5.43 -2.39 -0.01 3.51 16 39 H 0.26 13.03 8.32 -92.71 -0.77 12.26 16 40 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.07 3.01 8.14 -2.38 -0.02 2.99 16 42 H 0.07 2.95 8.14 -2.39 -0.02 2.93 16 43 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 44 H 0.04 2.08 5.14 -2.38 -0.01 2.07 16 45 H 0.12 5.35 5.01 -2.39 -0.01 5.34 16 Total: -1.00 -56.76 357.77 2.94 -53.82 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.99 Total: 29.24 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 4.30 Total: -27.71 kcal Atomic # 7 Polarization: -67.16 SS G_CDS: -4.09 Total: -71.25 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: -0.23 Total: -25.33 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 1.97 Total: 41.23 kcal Total: -56.76 2.94 -53.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880351132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.164 kcal (2) G-P(sol) polarization free energy of solvation -56.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds