Wall clock time and date at job start Tue Mar 31 2020 12:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86801 * 120.00230 * 2 1 4 4 H 1.48493 * 109.47473 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47049 * 300.00423 * 3 2 1 6 6 H 1.48505 * 109.47030 * 60.00306 * 3 2 1 7 7 C 1.38954 * 120.00031 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00047 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00044 * 0.02562 * 7 2 1 10 10 C 1.34768 * 120.00106 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00114 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00036 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47025 * 180.02562 * 12 10 9 14 14 C 1.46854 * 110.99861 * 292.06825 * 13 12 10 15 15 C 1.50480 * 110.89123 * 328.49287 * 14 13 12 16 16 C 1.38716 * 118.00529 * 129.62963 * 15 14 13 17 17 C 1.38014 * 120.55912 * 179.00356 * 16 15 14 18 18 C 1.38311 * 119.87125 * 359.88949 * 17 16 15 19 19 C 1.37784 * 119.91674 * 0.50136 * 18 17 16 20 20 C 1.38300 * 122.21190 * 309.46276 * 15 14 13 21 21 N 1.39256 * 123.10342 * 3.19858 * 20 15 14 22 22 C 1.47526 * 110.30591 * 208.38234 * 21 20 15 23 23 C 1.53781 * 107.63452 * 143.59504 * 22 21 20 24 24 C 1.54030 * 105.63259 * 359.76836 * 23 22 21 25 25 C 1.46639 * 114.09759 * 330.07360 * 21 20 15 26 26 H 1.08998 * 110.56096 * 328.79804 * 25 21 20 27 27 C 1.46795 * 110.99925 * 170.00025 * 13 12 10 28 28 H 0.97003 * 120.00102 * 359.97438 * 1 2 3 29 29 H 0.97005 * 119.99562 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.47184 * 59.99984 * 12 10 9 31 31 H 1.09007 * 109.46962 * 299.99932 * 12 10 9 32 32 H 1.08997 * 109.19259 * 88.85908 * 14 13 12 33 33 H 1.08998 * 109.19097 * 208.13146 * 14 13 12 34 34 H 1.08000 * 119.72201 * 359.02872 * 16 15 14 35 35 H 1.08002 * 120.06277 * 179.86317 * 17 16 15 36 36 H 1.08003 * 120.04108 * 180.52678 * 18 17 16 37 37 H 1.07994 * 119.76999 * 180.09026 * 19 18 17 38 38 H 1.08995 * 109.81956 * 263.01339 * 22 21 20 39 39 H 1.08992 * 109.82019 * 23.96231 * 22 21 20 40 40 H 1.09007 * 110.15304 * 240.76341 * 23 22 21 41 41 H 1.08996 * 110.35384 * 118.87901 * 23 22 21 42 42 H 1.09002 * 110.44337 * 224.55303 * 24 23 22 43 43 H 1.08997 * 110.54547 * 102.07906 * 24 23 22 44 44 H 1.09002 * 109.51079 * 209.96200 * 27 13 12 45 45 H 1.08997 * 109.51004 * 330.05877 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9972 -3.5578 -0.0026 11 8 3.2101 -3.5579 -0.0031 12 6 1.2437 -4.8629 -0.0032 13 7 2.1983 -5.9795 -0.0037 14 6 2.9318 -6.0441 -1.2743 15 6 2.0777 -5.5546 -2.4125 16 6 2.6128 -4.5993 -3.2642 17 6 1.8833 -4.1284 -4.3370 18 6 0.6087 -4.6125 -4.5691 19 6 0.0672 -5.5555 -3.7230 20 6 0.7962 -6.0274 -2.6290 21 7 0.1690 -6.9391 -1.7836 22 6 -0.8072 -7.7485 -2.5375 23 6 -0.7740 -9.1740 -1.9616 24 6 0.2794 -9.1434 -0.8382 25 6 1.0891 -7.8574 -1.1051 26 1 1.9603 -8.0569 -1.7290 27 6 1.5143 -7.2565 0.2337 28 1 -0.4850 0.8401 0.0004 29 1 0.3533 -2.3906 -0.0016 30 1 0.6166 -4.9201 -0.8930 31 1 0.6173 -4.9213 0.8870 32 1 3.8253 -5.4240 -1.2042 33 1 3.2267 -7.0759 -1.4657 34 1 3.6087 -4.2211 -3.0865 35 1 2.3069 -3.3829 -4.9938 36 1 0.0387 -4.2522 -5.4128 37 1 -0.9277 -5.9330 -3.9073 38 1 -1.8056 -7.3273 -2.4200 39 1 -0.5347 -7.7679 -3.5926 40 1 -0.4800 -9.8845 -2.7343 41 1 -1.7495 -9.4418 -1.5559 42 1 0.9254 -10.0193 -0.8981 43 1 -0.2035 -9.0935 0.1377 44 1 2.1912 -7.9429 0.7423 45 1 0.6335 -7.0880 0.8532 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880549833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:40 Heat of formation + Delta-G solvation = 10.317847 kcal Electronic energy + Delta-G solvation = -27899.884429 eV Core-core repulsion = 24303.016354 eV Total energy + Delta-G solvation = -3596.868075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.54373 -39.96180 -38.86983 -37.68495 -35.80815 -33.89157 -33.23508 -32.44193 -31.35393 -29.63070 -28.93794 -27.04015 -26.43910 -24.44469 -23.61937 -22.11513 -21.29211 -21.11726 -20.71786 -19.78215 -18.21571 -17.74229 -17.62917 -16.95593 -16.51819 -16.27996 -15.94115 -15.70981 -15.55229 -15.43786 -15.01697 -14.72749 -14.60418 -14.24158 -13.92299 -13.75954 -13.51680 -13.30921 -13.04199 -12.91710 -12.83131 -12.58508 -12.48340 -12.37671 -12.26266 -12.19138 -12.11034 -12.05608 -11.73683 -11.45580 -11.33898 -10.74200 -10.23968 -9.95732 -9.76172 -9.18955 -8.58612 -8.42477 -5.90595 0.40203 0.45004 1.36296 1.39843 1.54568 2.13449 2.29916 2.65867 2.76927 2.96155 3.24564 3.47343 3.61270 3.64150 3.78254 3.92740 3.99622 4.09571 4.14734 4.24124 4.32515 4.42383 4.45431 4.48649 4.56287 4.63689 4.65914 4.70513 4.78434 4.79123 4.87333 4.98212 4.99697 5.05071 5.08086 5.17230 5.25785 5.37005 5.43307 5.51204 5.64543 5.84416 5.92647 6.01698 6.09252 6.19443 6.33870 6.65248 7.17729 7.61627 8.18495 8.75675 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017426 B = 0.004495 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.408618 B = 6227.767111 C = 6728.059542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.014 4.014 3 Si 0.990 3.010 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.324 4.324 8 H 0.077 0.923 9 N -0.578 5.578 10 C 0.452 3.548 11 O -0.613 6.613 12 C 0.052 3.948 13 N -0.513 5.513 14 C 0.100 3.900 15 C -0.157 4.157 16 C -0.094 4.094 17 C -0.162 4.162 18 C -0.094 4.094 19 C -0.173 4.173 20 C 0.119 3.881 21 N -0.486 5.486 22 C 0.036 3.964 23 C -0.124 4.124 24 C -0.111 4.111 25 C 0.041 3.959 26 H 0.066 0.934 27 C 0.056 3.944 28 H 0.276 0.724 29 H 0.391 0.609 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 -19.725 -7.285 21.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.213 4.213 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.454 4.454 8 H 0.095 0.905 9 N -0.215 5.215 10 C 0.240 3.760 11 O -0.498 6.498 12 C -0.079 4.079 13 N -0.234 5.234 14 C -0.027 4.027 15 C -0.161 4.161 16 C -0.113 4.113 17 C -0.181 4.181 18 C -0.113 4.113 19 C -0.193 4.193 20 C 0.019 3.981 21 N -0.200 5.200 22 C -0.089 4.089 23 C -0.163 4.163 24 C -0.150 4.150 25 C -0.067 4.067 26 H 0.084 0.916 27 C -0.072 4.072 28 H 0.085 0.915 29 H 0.223 0.777 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.121 0.879 35 H 0.146 0.854 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.120 0.880 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.164 -19.285 -6.422 20.748 hybrid contribution -0.098 1.051 -1.049 1.488 sum -4.263 -18.233 -7.471 20.160 Atomic orbital electron populations 1.69697 1.06857 1.28949 1.51047 1.25996 0.96486 1.02240 0.96619 0.84911 0.78028 0.77322 0.78312 1.19839 1.19636 1.19560 1.19639 0.92459 0.83963 1.49336 0.90542 1.41898 1.08955 1.04790 1.65872 1.20679 0.88219 0.85742 0.81409 1.90437 1.15489 1.87881 1.56014 1.21996 0.93885 0.88865 1.03128 1.62588 1.26109 1.02792 1.31956 1.21093 0.96097 1.00923 0.84612 1.20037 0.95112 1.01427 0.99534 1.21102 0.99843 0.95557 0.94799 1.21200 0.96159 1.01722 0.99008 1.21221 0.94811 0.95710 0.99551 1.21382 1.01258 1.01351 0.95337 1.18755 0.91466 0.96438 0.91408 1.59787 1.16208 1.17039 1.26998 1.23090 0.96190 0.93065 0.96521 1.22298 1.00748 0.94918 0.98287 1.22369 0.97129 0.95333 1.00149 1.23184 0.94932 0.92719 0.95829 0.91603 1.22664 0.98891 0.89816 0.95847 0.91506 0.77655 0.90237 0.89273 0.92046 0.89026 0.87921 0.85414 0.83594 0.83578 0.89497 0.91941 0.90010 0.89140 0.88771 0.89658 0.87971 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.25 13.05 21.66 0.28 -51.97 16 2 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 3 Si 0.99 44.80 29.55 68.60 2.03 46.83 16 4 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.32 -19.34 9.68 84.04 0.81 -18.53 16 8 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 9 N -0.58 -31.98 5.29 -306.99 -1.62 -33.61 16 10 C 0.45 23.33 7.23 87.66 0.63 23.96 16 11 O -0.61 -35.49 14.34 -3.07 -0.04 -35.53 16 12 C 0.05 2.11 4.66 85.56 0.40 2.51 16 13 N -0.51 -18.08 4.78 -906.65 -4.33 -22.41 16 14 C 0.10 3.51 4.74 85.50 0.41 3.91 16 15 C -0.16 -5.43 3.73 -19.80 -0.07 -5.50 16 16 C -0.09 -3.46 9.57 22.33 0.21 -3.25 16 17 C -0.16 -5.28 10.05 22.23 0.22 -5.05 16 18 C -0.09 -2.66 10.04 22.18 0.22 -2.43 16 19 C -0.17 -4.72 8.52 22.51 0.19 -4.53 16 20 C 0.12 3.54 3.90 38.33 0.15 3.69 16 21 N -0.49 -11.86 3.86 -667.18 -2.58 -14.43 16 22 C 0.04 0.64 5.34 86.45 0.46 1.10 16 23 C -0.12 -1.50 6.92 31.21 0.22 -1.29 16 24 C -0.11 -1.49 6.48 31.38 0.20 -1.29 16 25 C 0.04 0.86 2.46 45.33 0.11 0.97 16 26 H 0.07 1.50 5.65 -2.39 -0.01 1.48 16 27 C 0.06 1.38 5.22 86.25 0.45 1.83 16 28 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 29 H 0.39 21.12 7.90 -92.70 -0.73 20.39 16 30 H 0.08 3.18 4.22 -2.39 -0.01 3.17 16 31 H 0.09 3.37 7.79 -2.38 -0.02 3.35 16 32 H 0.06 2.60 6.55 -2.39 -0.02 2.58 16 33 H 0.09 2.65 5.85 -2.39 -0.01 2.64 16 34 H 0.10 4.06 7.84 -2.91 -0.02 4.04 16 35 H 0.13 3.75 8.06 -2.91 -0.02 3.72 16 36 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 37 H 0.15 3.18 6.34 -2.91 -0.02 3.16 16 38 H 0.09 1.45 8.09 -2.39 -0.02 1.43 16 39 H 0.06 1.08 6.46 -2.39 -0.02 1.07 16 40 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.08 1.07 7.76 -2.39 -0.02 1.05 16 44 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.08 1.95 7.45 -2.39 -0.02 1.94 16 Total: -1.00 -71.77 342.27 -0.89 -72.65 By element: Atomic # 1 Polarization: 42.42 SS G_CDS: 0.29 Total: 42.70 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 5.09 Total: -4.24 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -8.25 Total: -122.42 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.04 Total: -35.53 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.77 -0.89 -72.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880549833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.972 kcal (2) G-P(sol) polarization free energy of solvation -71.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds