Wall clock time and date at job start Tue Mar 31 2020 12:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00173 * 2 1 4 4 H 1.48495 * 109.47226 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47064 * 300.00034 * 3 2 1 6 6 H 1.48508 * 109.47043 * 59.99921 * 3 2 1 7 7 C 1.37875 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99940 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99741 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.47075 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00372 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47466 * 180.02562 * 11 10 9 13 13 N 1.46891 * 109.47155 * 64.99828 * 12 11 10 14 14 C 1.46904 * 111.00126 * 179.97438 * 13 12 11 15 15 H 1.08998 * 109.46722 * 35.00548 * 14 13 12 16 16 C 1.52998 * 109.47123 * 155.00208 * 14 13 12 17 17 N 1.46504 * 109.47234 * 295.00251 * 16 14 13 18 18 C 1.36884 * 126.39451 * 269.71385 * 17 16 14 19 19 C 1.34673 * 106.81418 * 179.84145 * 18 17 16 20 20 N 1.34125 * 108.01761 * 0.42382 * 19 18 17 21 21 C 1.30496 * 109.26010 * 359.73098 * 20 19 18 22 22 C 1.50700 * 109.47349 * 275.00289 * 14 13 12 23 23 C 1.38231 * 119.99825 * 319.86570 * 22 14 13 24 24 C 1.38243 * 120.00070 * 180.02562 * 23 22 14 25 25 C 1.38235 * 119.99602 * 0.07188 * 24 23 22 26 26 C 1.38230 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38234 * 120.00292 * 139.99708 * 22 14 13 28 28 H 0.97001 * 120.00303 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46879 * 60.00887 * 9 7 2 30 30 H 1.08995 * 109.47366 * 300.00162 * 9 7 2 31 31 H 1.09002 * 109.46628 * 59.99992 * 11 10 9 32 32 H 1.08998 * 109.46942 * 300.00608 * 11 10 9 33 33 H 1.09007 * 109.47057 * 304.99960 * 12 11 10 34 34 H 1.09000 * 109.47414 * 185.00339 * 12 11 10 35 35 H 1.00897 * 111.00352 * 303.95968 * 13 12 11 36 36 H 1.09007 * 109.47393 * 55.00270 * 16 14 13 37 37 H 1.09002 * 109.47408 * 175.00246 * 16 14 13 38 38 H 1.08003 * 126.59058 * 359.97438 * 18 17 16 39 39 H 1.07996 * 125.98708 * 180.11790 * 19 18 17 40 40 H 1.07999 * 125.65040 * 180.02562 * 21 20 19 41 41 H 1.08001 * 120.00367 * 0.10906 * 23 22 14 42 42 H 1.08000 * 119.99728 * 180.34119 * 24 23 22 43 43 H 1.08000 * 119.99297 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.00350 * 179.97438 * 26 25 24 45 45 H 1.08007 * 119.99474 * 359.97438 * 27 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0004 13 7 3.4071 -5.8879 1.2553 14 6 4.4578 -6.9139 1.2918 15 1 4.8606 -7.0573 0.2891 16 6 5.5779 -6.4637 2.2317 17 7 6.2231 -5.2675 1.6847 18 6 7.2988 -5.2398 0.8387 19 6 7.5613 -3.9435 0.5845 20 7 6.6760 -3.1999 1.2644 21 6 5.8713 -3.9862 1.9257 22 6 3.8756 -8.2117 1.7896 23 6 2.9606 -8.2063 2.8257 24 6 2.4269 -9.3969 3.2828 25 6 2.8095 -10.5928 2.7046 26 6 3.7252 -10.5983 1.6692 27 6 4.2587 -9.4078 1.2120 28 1 -0.4851 0.8400 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 0.9453 -4.9821 -0.8914 32 1 0.9446 -4.9827 0.8886 33 1 3.3222 -5.7955 -0.8418 34 1 2.1821 -6.9375 -0.0905 35 1 3.7955 -4.9670 1.3934 36 1 5.1597 -6.2349 3.2120 37 1 6.3142 -7.2617 2.3281 38 1 7.8329 -6.0934 0.4482 39 1 8.3498 -3.5685 -0.0510 40 1 5.0584 -3.6653 2.5602 41 1 2.6616 -7.2720 3.2773 42 1 1.7079 -9.3921 4.0886 43 1 2.3928 -11.5229 3.0620 44 1 4.0244 -11.5327 1.2178 45 1 4.9749 -9.4121 0.4036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880569799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:17 Heat of formation + Delta-G solvation = 44.253837 kcal Electronic energy + Delta-G solvation = -25948.375336 eV Core-core repulsion = 22352.978836 eV Total energy + Delta-G solvation = -3595.396500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.98940 -39.67446 -37.39146 -36.23753 -33.62430 -32.63679 -31.71614 -31.03875 -29.47444 -28.88516 -27.49031 -26.33513 -23.84688 -22.73518 -22.33803 -21.66014 -21.23379 -20.88830 -20.47489 -17.50807 -17.00869 -16.49289 -16.20157 -15.84591 -15.46691 -15.21997 -14.93579 -14.49762 -14.35112 -14.18391 -13.89142 -13.73317 -13.55236 -13.46596 -13.16800 -12.94247 -12.87570 -12.53168 -12.39831 -11.79379 -11.69705 -11.34631 -11.21720 -11.11287 -10.75875 -10.70310 -10.54886 -9.97711 -9.76640 -9.62340 -9.07816 -9.04437 -8.89794 -8.80408 -8.54320 -8.35595 -8.15185 -6.06055 -4.07186 1.12382 1.25587 2.13695 2.76944 3.34915 3.37246 3.41571 3.51274 3.59641 3.97179 4.40802 4.50096 4.59145 4.72436 4.75890 4.83941 4.89570 4.91191 4.97348 4.99146 5.02282 5.30948 5.32979 5.38084 5.43660 5.51588 5.52909 5.66115 5.77006 5.78414 5.89861 6.02406 6.14916 6.25520 6.27396 6.31415 6.37207 6.46375 6.81990 6.84274 6.98994 7.12134 7.25789 7.40082 7.46092 7.86065 8.19029 8.26461 8.59306 9.07301 9.58132 11.05443 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012664 B = 0.003628 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.427983 B = 7716.923266 C = 9413.113721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.056 3.944 3 Si 0.904 3.096 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.069 0.931 9 C 0.198 3.802 10 O -0.397 6.397 11 C 0.062 3.938 12 C 0.070 3.930 13 N -0.678 5.678 14 C 0.111 3.889 15 H 0.058 0.942 16 C 0.107 3.893 17 N -0.464 5.464 18 C -0.067 4.067 19 C -0.027 4.027 20 N -0.485 5.485 21 C 0.194 3.806 22 C -0.077 4.077 23 C -0.082 4.082 24 C -0.126 4.126 25 C -0.121 4.121 26 C -0.126 4.126 27 C -0.115 4.115 28 H 0.262 0.738 29 H 0.003 0.997 30 H 0.005 0.995 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.076 0.924 35 H 0.358 0.642 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.207 0.793 41 H 0.134 0.866 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.121 -22.562 5.499 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.732 3.268 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.549 4.549 8 H 0.087 0.913 9 C 0.124 3.876 10 O -0.317 6.317 11 C -0.016 4.016 12 C -0.059 4.059 13 N -0.313 5.313 14 C 0.000 4.000 15 H 0.076 0.924 16 C -0.016 4.016 17 N -0.148 5.148 18 C -0.199 4.199 19 C -0.175 4.175 20 N -0.202 5.202 21 C -0.088 4.088 22 C -0.078 4.078 23 C -0.100 4.100 24 C -0.144 4.144 25 C -0.139 4.139 26 C -0.144 4.144 27 C -0.134 4.134 28 H 0.072 0.928 29 H 0.021 0.979 30 H 0.023 0.977 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.180 0.820 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.186 0.814 39 H 0.183 0.817 40 H 0.224 0.776 41 H 0.151 0.849 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 9.639 -22.004 5.893 24.735 hybrid contribution 0.510 0.205 -0.800 0.971 sum 10.150 -21.799 5.093 24.580 Atomic orbital electron populations 1.69974 1.06122 1.26983 1.50906 1.24932 0.94929 0.99433 0.95164 0.86319 0.80396 0.82599 0.77515 1.19148 1.20974 1.20870 1.21109 0.94200 0.89215 1.50370 0.91322 1.20179 0.88641 0.83502 0.95274 1.87819 1.35700 1.12979 1.95212 1.22267 0.94335 0.85392 0.99595 1.21969 0.95865 0.98285 0.89830 1.60576 1.25750 1.08609 1.36365 1.20728 0.90618 0.90926 0.97754 0.92388 1.22082 0.95074 0.86275 0.98145 1.45657 1.24803 1.07721 1.36639 1.22630 0.95058 1.00356 1.01884 1.22317 1.01669 0.89624 1.03848 1.70372 1.06001 1.33284 1.10506 1.25173 1.01849 0.78593 1.03198 1.19655 0.98168 0.93127 0.96899 1.21126 0.95004 0.98379 0.95482 1.21236 1.00200 0.92599 1.00327 1.21165 0.97914 0.98097 0.96718 1.21054 0.97960 0.97765 0.97582 1.21023 1.00261 0.92156 0.99935 0.92800 0.97943 0.97697 0.94103 0.93538 0.94726 0.90608 0.81968 0.87767 0.88456 0.81370 0.81682 0.77625 0.84856 0.86094 0.86386 0.86305 0.86452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 22.49 29.54 -169.99 -5.02 17.47 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.51 -15.26 9.43 -34.44 -0.32 -15.58 16 8 H 0.07 2.08 7.81 -52.49 -0.41 1.67 16 9 C 0.20 5.48 5.69 36.01 0.20 5.68 16 10 O -0.40 -9.49 9.85 -35.23 -0.35 -9.83 16 11 C 0.06 1.15 6.28 37.16 0.23 1.39 16 12 C 0.07 1.04 5.90 -3.83 -0.02 1.02 16 13 N -0.68 -9.15 5.55 -107.96 -0.60 -9.75 16 14 C 0.11 1.16 2.48 -68.86 -0.17 0.99 16 15 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 16 C 0.11 0.98 5.69 -4.04 -0.02 0.96 16 17 N -0.46 -5.52 2.62 -118.57 -0.31 -5.84 16 18 C -0.07 -0.79 11.58 -16.56 -0.19 -0.98 16 19 C -0.03 -0.38 11.87 -17.81 -0.21 -0.59 16 20 N -0.48 -8.51 11.25 -14.67 -0.17 -8.68 16 21 C 0.19 2.90 10.77 -90.38 -0.97 1.93 16 22 C -0.08 -0.75 4.71 -104.63 -0.49 -1.25 16 23 C -0.08 -0.82 9.33 -39.58 -0.37 -1.19 16 24 C -0.13 -1.13 10.05 -39.58 -0.40 -1.52 16 25 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 26 C -0.13 -1.03 10.05 -39.59 -0.40 -1.43 16 27 C -0.12 -1.01 9.67 -39.58 -0.38 -1.40 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.03 0.55 8.06 -51.92 -0.42 0.13 16 34 H 0.08 1.01 8.00 -51.93 -0.42 0.60 16 35 H 0.36 5.55 5.54 -39.29 -0.22 5.33 16 36 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.17 1.98 8.06 -52.49 -0.42 1.56 16 40 H 0.21 2.83 7.81 -52.49 -0.41 2.42 16 41 H 0.13 1.39 7.72 -52.49 -0.41 0.99 16 42 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.12 0.87 8.04 -52.48 -0.42 0.45 16 LS Contribution 380.49 15.07 5.73 5.73 Total: -1.00 -34.17 380.49 -10.87 -45.04 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.88 Total: 4.24 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -4.01 Total: -11.80 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.34 Total: -50.84 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: -0.35 Total: -9.83 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.17 -10.87 -45.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880569799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.292 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds