Wall clock time and date at job start Tue Mar 31 2020 12:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00173 * 2 1 4 4 H 1.48495 * 109.47226 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47064 * 300.00034 * 3 2 1 6 6 H 1.48508 * 109.47043 * 59.99921 * 3 2 1 7 7 C 1.37875 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99940 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99741 * 359.97438 * 7 2 1 10 10 O 1.42903 * 109.47075 * 180.02562 * 9 7 2 11 11 C 1.42895 * 114.00372 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47466 * 180.02562 * 11 10 9 13 13 N 1.46891 * 109.47155 * 64.99828 * 12 11 10 14 14 C 1.46904 * 111.00126 * 179.97438 * 13 12 11 15 15 H 1.08998 * 109.46722 * 35.00548 * 14 13 12 16 16 C 1.52998 * 109.47123 * 155.00208 * 14 13 12 17 17 N 1.46504 * 109.47234 * 295.00251 * 16 14 13 18 18 C 1.36884 * 126.39451 * 269.71385 * 17 16 14 19 19 C 1.34673 * 106.81418 * 179.84145 * 18 17 16 20 20 N 1.34125 * 108.01761 * 0.42382 * 19 18 17 21 21 C 1.30496 * 109.26010 * 359.73098 * 20 19 18 22 22 C 1.50700 * 109.47349 * 275.00289 * 14 13 12 23 23 C 1.38231 * 119.99825 * 319.86570 * 22 14 13 24 24 C 1.38243 * 120.00070 * 180.02562 * 23 22 14 25 25 C 1.38235 * 119.99602 * 0.07188 * 24 23 22 26 26 C 1.38230 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38234 * 120.00292 * 139.99708 * 22 14 13 28 28 H 0.97001 * 120.00303 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.46879 * 60.00887 * 9 7 2 30 30 H 1.08995 * 109.47366 * 300.00162 * 9 7 2 31 31 H 1.09002 * 109.46628 * 59.99992 * 11 10 9 32 32 H 1.08998 * 109.46942 * 300.00608 * 11 10 9 33 33 H 1.09007 * 109.47057 * 304.99960 * 12 11 10 34 34 H 1.09000 * 109.47414 * 185.00339 * 12 11 10 35 35 H 1.00897 * 111.00352 * 303.95968 * 13 12 11 36 36 H 1.09007 * 109.47393 * 55.00270 * 16 14 13 37 37 H 1.09002 * 109.47408 * 175.00246 * 16 14 13 38 38 H 1.08003 * 126.59058 * 359.97438 * 18 17 16 39 39 H 1.07996 * 125.98708 * 180.11790 * 19 18 17 40 40 H 1.07999 * 125.65040 * 180.02562 * 21 20 19 41 41 H 1.08001 * 120.00367 * 0.10906 * 23 22 14 42 42 H 1.08000 * 119.99728 * 180.34119 * 24 23 22 43 43 H 1.08000 * 119.99297 * 179.97438 * 25 24 23 44 44 H 1.08001 * 120.00350 * 179.97438 * 26 25 24 45 45 H 1.08007 * 119.99474 * 359.97438 * 27 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0004 13 7 3.4071 -5.8879 1.2553 14 6 4.4578 -6.9139 1.2918 15 1 4.8606 -7.0573 0.2891 16 6 5.5779 -6.4637 2.2317 17 7 6.2231 -5.2675 1.6847 18 6 7.2988 -5.2398 0.8387 19 6 7.5613 -3.9435 0.5845 20 7 6.6760 -3.1999 1.2644 21 6 5.8713 -3.9862 1.9257 22 6 3.8756 -8.2117 1.7896 23 6 2.9606 -8.2063 2.8257 24 6 2.4269 -9.3969 3.2828 25 6 2.8095 -10.5928 2.7046 26 6 3.7252 -10.5983 1.6692 27 6 4.2587 -9.4078 1.2120 28 1 -0.4851 0.8400 -0.0004 29 1 0.6241 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 0.9453 -4.9821 -0.8914 32 1 0.9446 -4.9827 0.8886 33 1 3.3222 -5.7955 -0.8418 34 1 2.1821 -6.9375 -0.0905 35 1 3.7955 -4.9670 1.3934 36 1 5.1597 -6.2349 3.2120 37 1 6.3142 -7.2617 2.3281 38 1 7.8329 -6.0934 0.4482 39 1 8.3498 -3.5685 -0.0510 40 1 5.0584 -3.6653 2.5602 41 1 2.6616 -7.2720 3.2773 42 1 1.7079 -9.3921 4.0886 43 1 2.3928 -11.5229 3.0620 44 1 4.0244 -11.5327 1.2178 45 1 4.9749 -9.4121 0.4036 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880569799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:16 Heat of formation + Delta-G solvation = 24.126816 kcal Electronic energy + Delta-G solvation = -25949.248109 eV Core-core repulsion = 22352.978836 eV Total energy + Delta-G solvation = -3596.269273 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.00180 -40.41903 -38.87932 -37.50009 -35.11273 -34.48385 -32.69446 -31.69595 -30.53643 -30.10810 -29.10306 -27.81982 -24.65447 -24.53734 -23.46538 -22.93197 -22.21551 -21.93709 -21.30027 -18.66763 -18.38741 -17.82099 -17.55277 -16.98276 -16.95974 -16.47997 -16.09540 -15.97377 -15.46885 -15.32289 -15.06818 -14.87438 -14.77885 -14.37295 -14.13092 -14.09298 -13.81288 -13.66003 -13.45305 -13.36942 -13.03383 -12.90157 -12.66172 -12.51863 -12.36983 -12.01751 -11.83360 -11.77150 -11.27250 -10.89554 -10.87425 -10.64768 -10.25513 -9.73927 -9.60892 -9.60737 -9.37204 -8.32967 -6.44015 0.44993 0.59714 1.14581 1.38623 1.39224 1.55711 1.86995 2.26538 2.34440 2.88612 3.00972 3.01726 3.17238 3.72203 3.79640 3.87297 3.93023 4.05556 4.09395 4.14643 4.25478 4.27499 4.28528 4.40137 4.50730 4.57716 4.60164 4.71411 4.74694 4.77124 4.79285 4.84974 4.90555 5.13617 5.16792 5.26090 5.32144 5.55510 5.63060 5.67476 5.72060 5.85989 5.95148 5.99364 6.15568 6.24888 6.25760 6.51805 6.81673 7.20800 7.27770 8.79426 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012664 B = 0.003628 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.427983 B = 7716.923266 C = 9413.113721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.010 3.990 3 Si 0.977 3.023 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.541 4.541 8 H 0.056 0.944 9 C 0.215 3.785 10 O -0.407 6.407 11 C 0.055 3.945 12 C 0.083 3.917 13 N -0.682 5.682 14 C 0.118 3.882 15 H 0.057 0.943 16 C 0.108 3.892 17 N -0.455 5.455 18 C -0.044 4.044 19 C -0.062 4.062 20 N -0.538 5.538 21 C 0.174 3.826 22 C -0.084 4.084 23 C -0.096 4.096 24 C -0.135 4.135 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.118 4.118 28 H 0.271 0.729 29 H -0.017 1.017 30 H -0.012 1.012 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.025 0.975 34 H 0.099 0.901 35 H 0.345 0.655 36 H 0.109 0.891 37 H 0.129 0.871 38 H 0.211 0.789 39 H 0.178 0.822 40 H 0.205 0.795 41 H 0.121 0.879 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.275 -24.629 5.483 27.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.189 4.189 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.578 4.578 8 H 0.074 0.926 9 C 0.140 3.860 10 O -0.327 6.327 11 C -0.022 4.022 12 C -0.046 4.046 13 N -0.316 5.316 14 C 0.008 3.992 15 H 0.075 0.925 16 C -0.013 4.013 17 N -0.138 5.138 18 C -0.177 4.177 19 C -0.209 4.209 20 N -0.256 5.256 21 C -0.109 4.109 22 C -0.085 4.085 23 C -0.115 4.115 24 C -0.153 4.153 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.136 4.136 28 H 0.079 0.921 29 H 0.001 0.999 30 H 0.005 0.995 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.117 0.883 35 H 0.166 0.834 36 H 0.128 0.872 37 H 0.147 0.853 38 H 0.228 0.772 39 H 0.195 0.805 40 H 0.221 0.779 41 H 0.139 0.861 42 H 0.149 0.851 43 H 0.156 0.844 44 H 0.159 0.841 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.778 -24.117 5.887 27.064 hybrid contribution 0.112 0.687 -0.785 1.050 sum 10.890 -23.430 5.102 26.336 Atomic orbital electron populations 1.70062 1.07558 1.28496 1.50746 1.25858 0.95889 1.03087 0.94030 0.85229 0.78589 0.77802 0.78399 1.19409 1.19556 1.19394 1.21345 0.93820 0.90858 1.51824 0.92551 1.19761 0.88426 0.84480 0.93378 1.87786 1.35467 1.14258 1.95202 1.22568 0.95925 0.83920 0.99827 1.21827 0.94869 0.97595 0.90281 1.60591 1.27067 1.08651 1.35285 1.20722 0.90078 0.90385 0.98046 0.92503 1.22301 0.95356 0.85856 0.97827 1.45756 1.24509 1.07501 1.36017 1.23213 0.93948 1.00646 0.99886 1.22716 1.02365 0.90815 1.05020 1.70271 1.07677 1.35534 1.12166 1.25109 1.02052 0.79895 1.03796 1.19556 0.98706 0.92980 0.97291 1.21117 0.95828 0.98410 0.96113 1.21425 1.00460 0.92628 1.00780 1.21466 0.97646 0.98574 0.96487 1.21370 0.97417 0.98497 0.97287 1.21225 1.00454 0.91848 1.00122 0.92054 0.99902 0.99466 0.93654 0.93454 0.95666 0.88297 0.83416 0.87244 0.85320 0.77248 0.80454 0.77853 0.86100 0.85125 0.84410 0.84126 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 2 C 0.01 0.59 5.46 84.65 0.46 1.05 16 3 Si 0.98 46.50 29.54 68.60 2.03 48.53 16 4 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.54 -33.28 9.43 25.60 0.24 -33.03 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.21 12.34 5.69 71.24 0.41 12.74 16 10 O -0.41 -20.15 9.85 -148.98 -1.47 -21.61 16 11 C 0.05 2.07 6.28 71.98 0.45 2.52 16 12 C 0.08 2.46 5.90 86.30 0.51 2.97 16 13 N -0.68 -18.19 5.55 -495.46 -2.75 -20.94 16 14 C 0.12 2.28 2.48 44.17 0.11 2.39 16 15 H 0.06 1.14 7.66 -2.39 -0.02 1.12 16 16 C 0.11 1.77 5.69 86.38 0.49 2.26 16 17 N -0.45 -10.34 2.62 -529.05 -1.39 -11.73 16 18 C -0.04 -0.95 11.58 83.09 0.96 0.01 16 19 C -0.06 -1.78 11.87 83.52 0.99 -0.79 16 20 N -0.54 -19.56 11.25 -200.32 -2.25 -21.82 16 21 C 0.17 5.36 10.77 180.27 1.94 7.30 16 22 C -0.08 -1.47 4.71 -19.87 -0.09 -1.56 16 23 C -0.10 -1.81 9.33 22.27 0.21 -1.60 16 24 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 25 C -0.12 -1.71 10.05 22.27 0.22 -1.48 16 26 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 27 C -0.12 -1.72 9.67 22.27 0.22 -1.50 16 28 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 29 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 30 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.03 0.79 8.06 -2.38 -0.02 0.77 16 34 H 0.10 2.48 8.00 -2.39 -0.02 2.46 16 35 H 0.35 10.92 5.54 -89.70 -0.50 10.43 16 36 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.21 2.62 8.06 -2.91 -0.02 2.59 16 39 H 0.18 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.20 6.03 7.81 -2.91 -0.02 6.00 16 41 H 0.12 2.52 7.72 -2.91 -0.02 2.49 16 42 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 43 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 44 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 45 H 0.13 1.48 8.04 -2.91 -0.02 1.46 16 Total: -1.00 -75.57 380.49 2.49 -73.08 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.47 Total: 23.31 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 7.57 Total: -12.14 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -6.11 Total: -111.17 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -1.47 Total: -21.61 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -75.57 2.49 -73.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880569799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.210 kcal (2) G-P(sol) polarization free energy of solvation -75.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds