Wall clock time and date at job start Tue Mar 31 2020 11:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86301 * 109.47136 * 2 1 4 4 C 1.86299 * 109.46953 * 240.00143 * 2 1 3 5 5 C 1.86801 * 109.47249 * 120.00084 * 2 1 3 6 6 C 1.38228 * 119.99968 * 270.21264 * 5 2 1 7 7 C 1.38238 * 120.00110 * 180.21723 * 6 5 2 8 8 C 1.38234 * 119.99675 * 359.52133 * 7 6 5 9 9 C 1.50702 * 120.00257 * 180.25732 * 8 7 6 10 10 N 1.46505 * 109.46804 * 90.00184 * 9 8 7 11 11 C 1.35310 * 125.86688 * 124.72162 * 10 9 8 12 12 C 1.35353 * 106.17482 * 179.90792 * 11 10 9 13 13 C 1.50697 * 126.75011 * 180.12559 * 12 11 10 14 14 C 1.50702 * 109.47198 * 125.23978 * 13 12 11 15 15 H 1.07996 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00190 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00029 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00085 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47263 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47274 * 120.00401 * 18 16 14 21 21 H 1.48501 * 109.47326 * 239.99939 * 18 16 14 22 22 N 1.33765 * 106.49693 * 0.34374 * 12 11 10 23 23 N 1.28634 * 108.88794 * 359.78071 * 22 12 11 24 24 C 1.38235 * 120.00220 * 0.28720 * 8 7 6 25 25 C 1.38234 * 119.99906 * 89.99425 * 5 2 1 26 26 H 1.09000 * 109.46480 * 299.99924 * 1 2 3 27 27 H 1.08997 * 109.46783 * 60.00006 * 1 2 3 28 28 H 1.08993 * 109.47236 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46730 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47017 * 300.00173 * 3 2 1 31 31 H 1.08996 * 109.46876 * 60.00082 * 3 2 1 32 32 H 1.09005 * 109.47130 * 299.99669 * 4 2 1 33 33 H 1.08997 * 109.47235 * 59.99806 * 4 2 1 34 34 H 1.09004 * 109.47271 * 180.02562 * 4 2 1 35 35 H 1.08004 * 120.00281 * 0.02562 * 6 5 2 36 36 H 1.08002 * 120.00519 * 179.80752 * 7 6 5 37 37 H 1.08993 * 109.47429 * 210.00613 * 9 8 7 38 38 H 1.08998 * 109.46961 * 330.00864 * 9 8 7 39 39 H 1.08003 * 126.91262 * 0.02562 * 11 10 9 40 40 H 1.08998 * 109.47115 * 245.23813 * 13 12 11 41 41 H 1.09007 * 109.47477 * 5.24134 * 13 12 11 42 42 H 0.96998 * 120.00149 * 179.97438 * 17 16 14 43 43 H 1.07996 * 120.00471 * 179.97438 * 24 8 7 44 44 H 1.08001 * 120.00324 * 0.02562 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4858 -0.8806 1.5252 6 6 2.7120 -0.1705 2.6893 7 6 3.1771 -0.8213 3.8167 8 6 3.4065 -2.1841 3.7828 9 6 3.9080 -2.8947 5.0134 10 7 2.7680 -3.3543 5.8106 11 6 2.5429 -4.6266 6.2122 12 6 1.3893 -4.6002 6.9197 13 6 0.7115 -5.7712 7.5834 14 6 0.4896 -5.4627 9.0417 15 1 0.8072 -4.5135 9.4473 16 6 -0.1198 -6.3919 9.8579 17 7 -0.5070 -7.5476 9.3640 18 14 -0.3955 -6.0093 11.6654 19 1 0.1261 -4.6525 11.9693 20 1 -1.8490 -6.0591 11.9658 21 1 0.3165 -7.0119 12.4979 22 7 0.9666 -3.3311 6.9099 23 7 1.8054 -2.6180 6.2446 24 6 3.1765 -2.8949 2.6197 25 6 2.7161 -2.2432 1.4910 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.5741 1.7564 -0.0005 30 1 2.1207 2.2703 -0.8899 31 1 2.1208 2.2702 0.8900 32 1 2.1207 -1.9059 -1.5212 33 1 2.1207 -0.3644 -2.4111 34 1 3.5741 -0.8786 -1.5210 35 1 2.5283 0.8935 2.7173 36 1 3.3568 -0.2660 4.7254 37 1 4.5131 -3.7515 4.7171 38 1 4.5138 -2.2099 5.6069 39 1 3.1605 -5.4893 6.0106 40 1 -0.2482 -5.9566 7.1011 41 1 1.3416 -6.6559 7.4910 42 1 -0.9354 -8.2015 9.9383 43 1 3.3562 -3.9595 2.5930 44 1 2.5364 -2.7986 0.5823 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881353892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:56 Heat of formation + Delta-G solvation = 76.128287 kcal Electronic energy + Delta-G solvation = -22465.008505 eV Core-core repulsion = 19234.200632 eV Total energy + Delta-G solvation = -3230.807873 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.146 amu Computer time = 6.04 seconds Orbital eigenvalues (eV) -42.46051 -39.26784 -34.84912 -33.22625 -31.21933 -31.12142 -30.91616 -28.97640 -27.86784 -27.78919 -27.49585 -26.51144 -23.39867 -22.68289 -22.01342 -20.98320 -19.92137 -17.07290 -16.68140 -16.12620 -15.75988 -15.28919 -14.87475 -14.48478 -14.06166 -13.68949 -13.62344 -13.48201 -13.47355 -13.25265 -12.97519 -12.84897 -12.69017 -12.60482 -12.49998 -12.46959 -12.12225 -12.05787 -11.61819 -11.17767 -10.95881 -10.71013 -10.62319 -10.40778 -10.31280 -10.16942 -10.04450 -9.66582 -9.39207 -9.23583 -8.98903 -8.91412 -8.40936 -8.07975 -5.96758 -3.96930 0.95390 1.33564 2.28515 2.36216 2.46952 2.54787 2.96253 3.17344 3.36816 3.43480 3.48923 3.57202 3.78347 4.37472 4.53645 4.56297 4.86077 4.91158 5.11682 5.24724 5.26315 5.27590 5.29937 5.30897 5.32955 5.39441 5.40521 5.40902 5.47895 5.78800 5.87305 5.93835 6.00071 6.07720 6.12796 6.17811 6.18737 6.32191 6.36146 6.46031 6.89426 7.17623 7.23313 7.56223 7.65792 8.01442 8.40459 9.06917 9.37485 9.65745 11.14474 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.025588 B = 0.002314 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.990939 B =12098.383837 C =12238.270911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 Si 1.059 2.941 3 C -0.447 4.447 4 C -0.448 4.448 5 C -0.364 4.364 6 C -0.092 4.092 7 C -0.093 4.093 8 C -0.100 4.100 9 C 0.161 3.839 10 N -0.301 5.301 11 C -0.085 4.085 12 C 0.035 3.965 13 C 0.092 3.908 14 C -0.501 4.501 15 H 0.059 0.941 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.896 3.104 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.285 1.285 22 N -0.263 5.263 23 N -0.102 5.102 24 C -0.109 4.109 25 C -0.094 4.094 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.180 0.820 40 H 0.038 0.962 41 H 0.036 0.964 42 H 0.260 0.740 43 H 0.119 0.881 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.164 14.443 -23.276 29.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.251 2.749 3 C -0.555 4.555 4 C -0.555 4.555 5 C -0.406 4.406 6 C -0.110 4.110 7 C -0.112 4.112 8 C -0.101 4.101 9 C 0.040 3.960 10 N -0.097 5.097 11 C -0.233 4.233 12 C -0.102 4.102 13 C 0.053 3.947 14 C -0.539 4.539 15 H 0.077 0.923 16 C -0.145 4.145 17 N -0.539 5.539 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 N -0.130 5.130 23 N -0.081 5.081 24 C -0.128 4.128 25 C -0.111 4.111 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.126 0.874 38 H 0.117 0.883 39 H 0.198 0.802 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.137 0.863 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 10.539 15.672 -23.099 29.837 hybrid contribution 0.476 -1.149 1.120 1.674 sum 11.016 14.523 -21.979 28.554 Atomic orbital electron populations 1.26130 1.20560 1.04690 1.04367 0.78182 0.66925 0.66063 0.63776 1.26113 1.06337 1.18612 1.04460 1.26117 1.06336 1.08112 1.14960 1.27406 1.03393 0.99533 1.10242 1.21035 0.97591 0.99669 0.92715 1.21140 0.97809 0.93793 0.98439 1.19752 1.01850 0.94394 0.94059 1.20762 0.85146 1.00561 0.89566 1.47192 1.18826 1.06862 1.36789 1.23365 1.03242 0.88680 1.08057 1.22999 0.93929 0.95267 0.98038 1.17725 0.95208 0.87131 0.94624 1.21087 1.38249 1.01677 0.92925 0.92255 1.24979 0.95646 0.95050 0.98845 1.69956 1.41317 1.06855 1.35736 0.86459 0.77863 0.78329 0.84945 1.19720 1.20955 1.21120 1.75076 1.20262 1.03519 1.14190 1.78188 0.95732 1.21224 1.12920 1.21130 0.99157 0.99503 0.92976 1.20999 0.97822 0.94643 0.97684 0.91044 0.91258 0.91113 0.91117 0.91143 0.91087 0.91145 0.91129 0.91118 0.86078 0.85910 0.87428 0.88256 0.80245 0.94366 0.94600 0.93007 0.86267 0.86163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -3.11 8.65 101.05 0.87 -2.24 16 2 Si 1.06 5.76 12.32 -169.99 -2.09 3.67 16 3 C -0.45 -2.40 8.54 101.05 0.86 -1.54 16 4 C -0.45 -2.38 8.53 101.05 0.86 -1.52 16 5 C -0.36 -3.25 4.59 -39.59 -0.18 -3.43 16 6 C -0.09 -0.92 9.29 -39.59 -0.37 -1.28 16 7 C -0.09 -1.07 9.70 -39.58 -0.38 -1.46 16 8 C -0.10 -1.18 5.25 -104.62 -0.55 -1.73 16 9 C 0.16 1.87 6.58 -5.19 -0.03 1.84 16 10 N -0.30 -5.18 3.43 -62.44 -0.21 -5.39 16 11 C -0.09 -1.59 11.49 -17.05 -0.20 -1.79 16 12 C 0.03 0.82 6.44 -82.78 -0.53 0.29 16 13 C 0.09 2.45 5.55 -29.04 -0.16 2.29 16 14 C -0.50 -14.69 9.09 -34.44 -0.31 -15.00 16 15 H 0.06 1.79 7.74 -52.49 -0.41 1.38 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 18 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 19 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 N -0.26 -6.48 12.40 33.29 0.41 -6.07 16 23 N -0.10 -2.15 12.92 60.35 0.78 -1.37 16 24 C -0.11 -1.20 9.70 -39.58 -0.38 -1.59 16 25 C -0.09 -0.91 9.29 -39.58 -0.37 -1.28 16 26 H 0.07 0.54 7.96 -51.93 -0.41 0.13 16 27 H 0.07 0.40 7.96 -51.93 -0.41 -0.01 16 28 H 0.07 0.53 7.96 -51.93 -0.41 0.12 16 29 H 0.07 0.37 7.96 -51.93 -0.41 -0.04 16 30 H 0.07 0.33 7.96 -51.93 -0.41 -0.08 16 31 H 0.07 0.39 7.69 -51.93 -0.40 -0.01 16 32 H 0.07 0.38 7.69 -51.93 -0.40 -0.02 16 33 H 0.07 0.33 7.96 -51.93 -0.41 -0.08 16 34 H 0.07 0.37 7.96 -51.93 -0.41 -0.04 16 35 H 0.12 0.93 7.44 -52.48 -0.39 0.54 16 36 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 37 H 0.11 0.92 8.01 -51.93 -0.42 0.50 16 38 H 0.10 0.99 8.09 -51.93 -0.42 0.57 16 39 H 0.18 2.64 8.06 -52.48 -0.42 2.22 16 40 H 0.04 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.04 0.94 8.12 -51.92 -0.42 0.52 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.12 0.90 7.43 -52.49 -0.39 0.51 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -35.64 381.94 -7.58 -43.22 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -6.96 Total: -4.04 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: -0.97 Total: -26.91 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 1.71 Total: -39.07 kcal Atomic # 14 Polarization: 28.16 SS G_CDS: -7.12 Total: 21.04 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.64 -7.58 -43.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881353892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.348 kcal (2) G-P(sol) polarization free energy of solvation -35.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.04 seconds