Wall clock time and date at job start Tue Mar 31 2020 11:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86307 * 1 3 3 C 1.86301 * 109.47136 * 2 1 4 4 C 1.86299 * 109.46953 * 240.00143 * 2 1 3 5 5 C 1.86801 * 109.47249 * 120.00084 * 2 1 3 6 6 C 1.38228 * 119.99968 * 270.21264 * 5 2 1 7 7 C 1.38238 * 120.00110 * 180.21723 * 6 5 2 8 8 C 1.38234 * 119.99675 * 359.52133 * 7 6 5 9 9 C 1.50702 * 120.00257 * 180.25732 * 8 7 6 10 10 N 1.46505 * 109.46804 * 90.00184 * 9 8 7 11 11 C 1.35310 * 125.86688 * 124.72162 * 10 9 8 12 12 C 1.35353 * 106.17482 * 179.90792 * 11 10 9 13 13 C 1.50697 * 126.75011 * 180.12559 * 12 11 10 14 14 C 1.50702 * 109.47198 * 125.23978 * 13 12 11 15 15 H 1.07996 * 120.00142 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00190 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00029 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00085 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47263 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47274 * 120.00401 * 18 16 14 21 21 H 1.48501 * 109.47326 * 239.99939 * 18 16 14 22 22 N 1.33765 * 106.49693 * 0.34374 * 12 11 10 23 23 N 1.28634 * 108.88794 * 359.78071 * 22 12 11 24 24 C 1.38235 * 120.00220 * 0.28720 * 8 7 6 25 25 C 1.38234 * 119.99906 * 89.99425 * 5 2 1 26 26 H 1.09000 * 109.46480 * 299.99924 * 1 2 3 27 27 H 1.08997 * 109.46783 * 60.00006 * 1 2 3 28 28 H 1.08993 * 109.47236 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46730 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47017 * 300.00173 * 3 2 1 31 31 H 1.08996 * 109.46876 * 60.00082 * 3 2 1 32 32 H 1.09005 * 109.47130 * 299.99669 * 4 2 1 33 33 H 1.08997 * 109.47235 * 59.99806 * 4 2 1 34 34 H 1.09004 * 109.47271 * 180.02562 * 4 2 1 35 35 H 1.08004 * 120.00281 * 0.02562 * 6 5 2 36 36 H 1.08002 * 120.00519 * 179.80752 * 7 6 5 37 37 H 1.08993 * 109.47429 * 210.00613 * 9 8 7 38 38 H 1.08998 * 109.46961 * 330.00864 * 9 8 7 39 39 H 1.08003 * 126.91262 * 0.02562 * 11 10 9 40 40 H 1.08998 * 109.47115 * 245.23813 * 13 12 11 41 41 H 1.09007 * 109.47477 * 5.24134 * 13 12 11 42 42 H 0.96998 * 120.00149 * 179.97438 * 17 16 14 43 43 H 1.07996 * 120.00471 * 179.97438 * 24 8 7 44 44 H 1.08001 * 120.00324 * 0.02562 * 25 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8631 0.0000 0.0000 3 6 2.4841 1.7565 0.0000 4 6 2.4840 -0.8782 -1.5212 5 6 2.4858 -0.8806 1.5252 6 6 2.7120 -0.1705 2.6893 7 6 3.1771 -0.8213 3.8167 8 6 3.4065 -2.1841 3.7828 9 6 3.9080 -2.8947 5.0134 10 7 2.7680 -3.3543 5.8106 11 6 2.5429 -4.6266 6.2122 12 6 1.3893 -4.6002 6.9197 13 6 0.7115 -5.7712 7.5834 14 6 0.4896 -5.4627 9.0417 15 1 0.8072 -4.5135 9.4473 16 6 -0.1198 -6.3919 9.8579 17 7 -0.5070 -7.5476 9.3640 18 14 -0.3955 -6.0093 11.6654 19 1 0.1261 -4.6525 11.9693 20 1 -1.8490 -6.0591 11.9658 21 1 0.3165 -7.0119 12.4979 22 7 0.9666 -3.3311 6.9099 23 7 1.8054 -2.6180 6.2446 24 6 3.1765 -2.8949 2.6197 25 6 2.7161 -2.2432 1.4910 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.5741 1.7564 -0.0005 30 1 2.1207 2.2703 -0.8899 31 1 2.1208 2.2702 0.8900 32 1 2.1207 -1.9059 -1.5212 33 1 2.1207 -0.3644 -2.4111 34 1 3.5741 -0.8786 -1.5210 35 1 2.5283 0.8935 2.7173 36 1 3.3568 -0.2660 4.7254 37 1 4.5131 -3.7515 4.7171 38 1 4.5138 -2.2099 5.6069 39 1 3.1605 -5.4893 6.0106 40 1 -0.2482 -5.9566 7.1011 41 1 1.3416 -6.6559 7.4910 42 1 -0.9354 -8.2015 9.9383 43 1 3.3562 -3.9595 2.5930 44 1 2.5364 -2.7986 0.5823 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881353892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:53 Heat of formation + Delta-G solvation = 57.752495 kcal Electronic energy + Delta-G solvation = -22465.805339 eV Core-core repulsion = 19234.200632 eV Total energy + Delta-G solvation = -3231.604707 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.146 amu Computer time = 2.99 seconds Orbital eigenvalues (eV) -44.02889 -40.06503 -36.23959 -35.19463 -32.92080 -32.21499 -31.86291 -29.49821 -29.31799 -28.26946 -28.26154 -27.62423 -25.45991 -23.48421 -23.19699 -22.39458 -21.32994 -18.57065 -18.16526 -17.66649 -16.88367 -16.55238 -16.08864 -15.84334 -15.59832 -14.65626 -14.42784 -14.31848 -14.22749 -14.02417 -13.96099 -13.77758 -13.70850 -13.53488 -13.41977 -13.11201 -13.06681 -12.97007 -12.94934 -12.71794 -12.65591 -12.47110 -11.95613 -11.87195 -11.66126 -11.37536 -10.95959 -10.90550 -10.73063 -10.69737 -10.58813 -9.85750 -9.78044 -9.67284 -8.19542 -6.28040 0.14186 0.54469 0.79650 1.38828 1.40468 1.53619 1.68397 1.78659 1.84602 2.07805 2.15483 2.43894 2.68562 2.98134 3.13050 3.44552 3.69906 3.80599 4.10572 4.13587 4.31432 4.33171 4.48254 4.53431 4.67722 4.81669 4.83150 4.85124 4.91993 4.92205 4.93450 4.94646 5.02121 5.17296 5.28962 5.40400 5.45068 5.53436 5.57818 5.59544 5.61243 5.68618 5.73560 5.76437 5.83809 6.14715 6.22282 6.80319 7.38517 7.74075 8.91668 Molecular weight = 315.15amu Principal moments of inertia in cm(-1) A = 0.025588 B = 0.002314 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.990939 B =12098.383837 C =12238.270911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.469 4.469 2 Si 1.124 2.876 3 C -0.455 4.455 4 C -0.453 4.453 5 C -0.375 4.375 6 C -0.106 4.106 7 C -0.113 4.113 8 C -0.119 4.119 9 C 0.150 3.850 10 N -0.281 5.281 11 C -0.054 4.054 12 C -0.008 4.008 13 C 0.103 3.897 14 C -0.521 4.521 15 H 0.043 0.957 16 C 0.007 3.993 17 N -0.927 5.927 18 Si 0.963 3.037 19 H -0.275 1.275 20 H -0.277 1.277 21 H -0.270 1.270 22 N -0.313 5.313 23 N -0.113 5.113 24 C -0.123 4.123 25 C -0.106 4.106 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.139 0.861 36 H 0.120 0.880 37 H 0.146 0.854 38 H 0.117 0.883 39 H 0.225 0.775 40 H 0.006 0.994 41 H 0.035 0.965 42 H 0.266 0.734 43 H 0.131 0.869 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.807 14.966 -24.669 31.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.575 4.575 2 Si 1.311 2.689 3 C -0.563 4.563 4 C -0.561 4.561 5 C -0.414 4.414 6 C -0.124 4.124 7 C -0.132 4.132 8 C -0.120 4.120 9 C 0.032 3.968 10 N -0.076 5.076 11 C -0.204 4.204 12 C -0.147 4.147 13 C 0.064 3.936 14 C -0.560 4.560 15 H 0.061 0.939 16 C -0.191 4.191 17 N -0.567 5.567 18 Si 0.788 3.212 19 H -0.200 1.200 20 H -0.202 1.202 21 H -0.195 1.195 22 N -0.179 5.179 23 N -0.092 5.092 24 C -0.142 4.142 25 C -0.124 4.124 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.157 0.843 36 H 0.138 0.862 37 H 0.164 0.836 38 H 0.135 0.865 39 H 0.241 0.759 40 H 0.024 0.976 41 H 0.053 0.947 42 H 0.075 0.925 43 H 0.149 0.851 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 12.193 16.209 -24.484 31.794 hybrid contribution 0.019 -1.253 1.411 1.887 sum 12.211 14.957 -23.073 30.086 Atomic orbital electron populations 1.26380 1.22597 1.04089 1.04408 0.77261 0.64594 0.65307 0.61721 1.26179 1.06625 1.18594 1.04898 1.26157 1.06640 1.08215 1.15116 1.28253 1.01916 0.99704 1.11492 1.21382 0.97418 1.00828 0.92722 1.21351 0.98581 0.94207 0.99076 1.19812 1.03239 0.94595 0.94380 1.21351 0.83539 1.02716 0.89245 1.47630 1.18713 1.06070 1.35209 1.23783 1.01411 0.90204 1.05024 1.22658 0.96467 0.94461 1.01072 1.17380 0.94021 0.88640 0.93555 1.21292 1.38898 1.01181 0.94622 0.93874 1.25806 0.95114 0.94811 1.03379 1.70045 1.41615 1.07605 1.37466 0.85431 0.78070 0.78175 0.79538 1.19953 1.20209 1.19478 1.74983 1.22432 1.04326 1.16201 1.78064 0.96516 1.21343 1.13246 1.21425 0.99239 1.00285 0.93225 1.21401 0.97415 0.95274 0.98275 0.92137 0.90132 0.92045 0.90795 0.90171 0.91271 0.91117 0.90173 0.90749 0.84331 0.86179 0.83576 0.86458 0.75863 0.97607 0.94725 0.92482 0.85086 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.47 -5.99 8.65 113.37 0.98 -5.01 16 2 Si 1.12 9.98 12.32 68.60 0.85 10.82 16 3 C -0.46 -3.86 8.54 113.37 0.97 -2.89 16 4 C -0.45 -3.62 8.53 113.37 0.97 -2.65 16 5 C -0.38 -6.16 4.59 22.27 0.10 -6.06 16 6 C -0.11 -2.01 9.29 22.27 0.21 -1.80 16 7 C -0.11 -2.55 9.70 22.27 0.22 -2.34 16 8 C -0.12 -2.66 5.25 -19.87 -0.10 -2.77 16 9 C 0.15 3.14 6.58 85.63 0.56 3.71 16 10 N -0.28 -9.27 3.43 -351.46 -1.21 -10.48 16 11 C -0.05 -1.95 11.49 83.49 0.96 -0.99 16 12 C -0.01 -0.41 6.44 41.60 0.27 -0.14 16 13 C 0.10 5.69 5.55 29.10 0.16 5.85 16 14 C -0.52 -31.49 9.09 25.60 0.23 -31.25 16 15 H 0.04 2.68 7.74 -2.91 -0.02 2.66 16 16 C 0.01 0.41 5.46 84.65 0.46 0.87 16 17 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 18 Si 0.96 46.37 29.54 68.60 2.03 48.40 16 19 H -0.27 -13.21 7.11 99.48 0.71 -12.51 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 N -0.31 -15.86 12.40 -48.60 -0.60 -16.46 16 23 N -0.11 -4.78 12.92 37.02 0.48 -4.30 16 24 C -0.12 -2.52 9.70 22.27 0.22 -2.30 16 25 C -0.11 -1.89 9.29 22.27 0.21 -1.68 16 26 H 0.06 0.89 7.96 -2.39 -0.02 0.87 16 27 H 0.08 0.82 7.96 -2.39 -0.02 0.80 16 28 H 0.06 0.88 7.96 -2.39 -0.02 0.87 16 29 H 0.07 0.60 7.96 -2.38 -0.02 0.58 16 30 H 0.08 0.55 7.96 -2.39 -0.02 0.53 16 31 H 0.07 0.62 7.69 -2.39 -0.02 0.61 16 32 H 0.07 0.58 7.69 -2.38 -0.02 0.56 16 33 H 0.08 0.52 7.96 -2.39 -0.02 0.50 16 34 H 0.07 0.57 7.96 -2.38 -0.02 0.55 16 35 H 0.14 2.00 7.44 -2.91 -0.02 1.98 16 36 H 0.12 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.15 1.93 8.01 -2.39 -0.02 1.91 16 38 H 0.12 2.08 8.09 -2.39 -0.02 2.06 16 39 H 0.22 5.80 8.06 -2.91 -0.02 5.77 16 40 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.03 1.87 8.12 -2.38 -0.02 1.85 16 42 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 43 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 44 H 0.14 1.80 7.43 -2.91 -0.02 1.78 16 Total: -1.00 -79.69 381.94 9.20 -70.49 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 0.97 Total: 7.03 kcal Atomic # 6 Polarization: -55.85 SS G_CDS: 6.41 Total: -49.45 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -1.05 Total: -87.29 kcal Atomic # 14 Polarization: 56.35 SS G_CDS: 2.87 Total: 59.22 kcal Total: -79.69 9.20 -70.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881353892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.242 kcal (2) G-P(sol) polarization free energy of solvation -79.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.99 seconds