Wall clock time and date at job start Tue Mar 31 2020 12:01:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.72498 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00103 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99898 * 180.02562 * 11 10 9 14 14 C 1.46257 * 121.30957 * 0.02562 * 13 11 10 15 15 C 1.50190 * 110.72628 * 269.09813 * 14 13 11 16 16 C 1.38358 * 118.75798 * 131.99696 * 15 14 13 17 17 C 1.38048 * 120.67028 * 177.22867 * 16 15 14 18 18 C 1.38314 * 119.56453 * 359.73975 * 17 16 15 19 19 C 1.37584 * 120.09664 * 1.33763 * 18 17 16 20 20 C 1.39015 * 120.97761 * 311.52928 * 15 14 13 21 21 N 1.38597 * 124.81166 * 6.18571 * 20 15 14 22 22 C 1.47606 * 110.55513 * 203.88594 * 21 20 15 23 23 C 1.53706 * 107.56260 * 147.48430 * 22 21 20 24 24 C 1.54055 * 105.62072 * 0.02562 * 23 22 21 25 25 C 1.45961 * 117.19197 * 328.38470 * 21 20 15 26 26 H 1.08995 * 110.59601 * 325.53479 * 25 21 20 27 27 C 1.46294 * 121.31064 * 179.71596 * 13 11 10 28 28 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 30 30 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 31 31 H 0.97005 * 120.00530 * 0.02562 * 10 9 7 32 32 H 1.08996 * 109.22622 * 29.41806 * 14 13 11 33 33 H 1.08996 * 109.22559 * 148.78041 * 14 13 11 34 34 H 1.08000 * 119.66350 * 357.24331 * 16 15 14 35 35 H 1.08005 * 120.21399 * 179.74310 * 17 16 15 36 36 H 1.08004 * 119.95421 * 181.36409 * 18 17 16 37 37 H 1.08004 * 119.53896 * 180.14973 * 19 18 17 38 38 H 1.09002 * 109.83293 * 266.99003 * 22 21 20 39 39 H 1.08999 * 109.83869 * 27.97812 * 22 21 20 40 40 H 1.08993 * 110.21529 * 240.97077 * 23 22 21 41 41 H 1.08999 * 110.21147 * 119.04538 * 23 22 21 42 42 H 1.09006 * 110.44652 * 224.63814 * 24 23 22 43 43 H 1.08996 * 110.45280 * 102.08676 * 24 23 22 44 44 H 1.09002 * 109.96941 * 267.91476 * 27 13 11 45 45 H 1.09005 * 109.96159 * 29.20847 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0082 11 6 5.3251 -2.8213 0.0095 12 8 6.1151 -1.8971 0.0051 13 7 5.7744 -4.0919 0.0155 14 6 4.8497 -5.2250 0.0203 15 6 4.5301 -5.6444 1.4266 16 6 3.2068 -5.8468 1.7764 17 6 2.8723 -6.2875 3.0412 18 6 3.8721 -6.5336 3.9647 19 6 5.1887 -6.3134 3.6314 20 6 5.5396 -5.8372 2.3627 21 7 6.8798 -5.5550 2.1504 22 6 7.7280 -6.3614 3.0498 23 6 9.0384 -6.6626 2.3051 24 6 8.8985 -5.9851 0.9286 25 6 7.3864 -5.7078 0.7901 26 1 6.8885 -6.5362 0.2864 27 6 7.2062 -4.3920 0.0108 28 1 -0.4850 0.8400 -0.0004 29 1 3.8752 -0.6845 -0.8913 30 1 3.8746 -0.6756 0.8886 31 1 3.3697 -3.3124 0.0113 32 1 3.9284 -4.9386 -0.4870 33 1 5.3049 -6.0620 -0.5091 34 1 2.4278 -5.6584 1.0525 35 1 1.8367 -6.4391 3.3077 36 1 3.6190 -6.8995 4.9489 37 1 5.9623 -6.5109 4.3588 38 1 7.9403 -5.8002 3.9598 39 1 7.2213 -7.2939 3.2987 40 1 9.1644 -7.7385 2.1846 41 1 9.8851 -6.2419 2.8475 42 1 9.2365 -6.6554 0.1382 43 1 9.4611 -5.0519 0.9045 44 1 7.5582 -4.5114 -1.0139 45 1 7.7562 -3.5899 0.5031 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883656387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:47 Heat of formation + Delta-G solvation = 23.513516 kcal Electronic energy + Delta-G solvation = -27205.162127 eV Core-core repulsion = 23608.866259 eV Total energy + Delta-G solvation = -3596.295868 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.21328 -39.11876 -38.04000 -35.69045 -34.25779 -33.08795 -32.30987 -31.46206 -30.56572 -28.60716 -27.73991 -26.27324 -25.09650 -23.15217 -22.12498 -21.50197 -20.60281 -20.41561 -19.34278 -17.81559 -17.41909 -16.70879 -16.33647 -16.16293 -15.34282 -14.96631 -14.89458 -14.48491 -14.37132 -14.17445 -14.00169 -13.49823 -13.23816 -13.08167 -12.92626 -12.80125 -12.32844 -12.30528 -12.12320 -11.92338 -11.88382 -11.64456 -11.48098 -11.23216 -10.92053 -10.84811 -10.78284 -10.69922 -9.91007 -9.87653 -9.50269 -9.39079 -8.77414 -8.70919 -8.49634 -7.88971 -7.61170 -6.15173 -4.16230 1.39030 1.47853 3.13294 3.32425 3.39082 3.45177 3.49216 3.81956 3.86286 4.21856 4.30815 4.40002 4.57488 4.66825 4.79500 4.81250 4.84954 4.98641 5.05386 5.11964 5.20756 5.23283 5.34486 5.40676 5.44772 5.46115 5.54768 5.56835 5.65426 5.67507 5.81137 5.85954 5.96675 6.01300 6.21007 6.48950 6.63677 6.64986 6.80450 6.88227 6.94076 7.19623 7.33534 7.33857 7.48452 7.58383 8.32472 8.74253 8.86502 9.28589 9.47509 10.96870 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.004241 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.649209 B = 6600.203856 C = 7737.817555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.238 3.762 10 N -0.719 5.719 11 C 0.705 3.295 12 O -0.601 6.601 13 N -0.629 5.629 14 C 0.153 3.847 15 C -0.147 4.147 16 C -0.073 4.073 17 C -0.152 4.152 18 C -0.088 4.088 19 C -0.181 4.181 20 C 0.151 3.849 21 N -0.481 5.481 22 C 0.045 3.955 23 C -0.132 4.132 24 C -0.121 4.121 25 C 0.070 3.930 26 H 0.069 0.931 27 C 0.146 3.854 28 H 0.267 0.733 29 H 0.018 0.982 30 H 0.022 0.978 31 H 0.391 0.609 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.788 -19.670 4.436 25.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.577 4.577 8 H 0.096 0.904 9 C 0.115 3.885 10 N -0.372 5.372 11 C 0.406 3.594 12 O -0.480 6.480 13 N -0.367 5.367 14 C 0.029 3.971 15 C -0.152 4.152 16 C -0.092 4.092 17 C -0.171 4.171 18 C -0.107 4.107 19 C -0.202 4.202 20 C 0.051 3.949 21 N -0.193 5.193 22 C -0.080 4.080 23 C -0.170 4.170 24 C -0.159 4.159 25 C -0.037 4.037 26 H 0.087 0.913 27 C 0.021 3.979 28 H 0.076 0.924 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.225 0.775 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 15.323 -18.288 4.489 24.277 hybrid contribution -0.237 -0.068 0.034 0.249 sum 15.086 -18.356 4.523 24.186 Atomic orbital electron populations 1.69878 1.06175 1.27320 1.49807 1.24756 0.94758 0.99076 0.93932 0.86831 0.80680 0.83267 0.79017 1.19875 1.20974 1.18439 1.21079 0.88551 0.95117 1.52917 0.90392 1.19349 0.94808 0.77781 0.96531 1.45456 1.03728 1.10927 1.77112 1.15920 0.83599 0.81930 0.77912 1.90845 1.55471 1.42513 1.59194 1.46968 1.05970 1.04142 1.79618 1.20106 0.94674 0.89558 0.92736 1.19823 0.92868 1.06262 0.96277 1.20928 0.94660 0.96716 0.96925 1.20981 0.99270 1.03008 0.93888 1.20850 0.92511 0.98360 0.98958 1.21192 0.97117 1.05753 0.96156 1.18547 0.87852 0.94503 0.94023 1.57743 1.01365 1.53065 1.07121 1.22950 0.92538 0.96013 0.96498 1.22294 0.97720 1.00901 0.96080 1.22412 0.94299 1.01847 0.97352 1.22707 0.95369 0.97840 0.87768 0.91293 1.21677 0.81731 0.95783 0.98664 0.92352 0.96434 0.96024 0.77486 0.89707 0.89964 0.85567 0.85961 0.86334 0.86010 0.89914 0.91969 0.91041 0.90421 0.90200 0.89929 0.91530 0.89014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.97 13.96 55.43 0.77 -26.19 16 2 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 3 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 4 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.61 6.53 56.52 0.37 -6.24 16 7 C -0.54 -15.24 9.83 -34.44 -0.34 -15.58 16 8 H 0.08 2.28 7.84 -52.49 -0.41 1.87 16 9 C 0.24 6.21 4.50 -5.19 -0.02 6.19 16 10 N -0.72 -16.04 5.43 -66.42 -0.36 -16.40 16 11 C 0.70 15.17 8.33 -86.92 -0.72 14.45 16 12 O -0.60 -15.13 16.05 5.29 0.08 -15.04 16 13 N -0.63 -10.27 2.67 -180.85 -0.48 -10.76 16 14 C 0.15 2.04 4.87 -5.57 -0.03 2.01 16 15 C -0.15 -2.04 5.61 -104.54 -0.59 -2.62 16 16 C -0.07 -0.98 9.58 -39.61 -0.38 -1.36 16 17 C -0.15 -1.90 10.07 -39.62 -0.40 -2.30 16 18 C -0.09 -1.04 10.02 -39.79 -0.40 -1.43 16 19 C -0.18 -2.21 8.53 -39.16 -0.33 -2.55 16 20 C 0.15 2.04 5.83 -83.86 -0.49 1.55 16 21 N -0.48 -5.91 4.42 -161.85 -0.72 -6.63 16 22 C 0.05 0.41 5.24 -3.07 -0.02 0.39 16 23 C -0.13 -0.91 6.92 -25.81 -0.18 -1.09 16 24 C -0.12 -0.92 6.47 -25.47 -0.16 -1.09 16 25 C 0.07 0.74 2.48 -67.00 -0.17 0.57 16 26 H 0.07 0.68 6.35 -51.93 -0.33 0.35 16 27 C 0.15 1.95 5.58 -3.64 -0.02 1.93 16 28 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.02 0.48 7.58 -51.93 -0.39 0.08 16 30 H 0.02 0.61 7.18 -51.93 -0.37 0.23 16 31 H 0.39 7.85 6.16 -40.82 -0.25 7.60 16 32 H 0.08 1.12 6.10 -51.93 -0.32 0.81 16 33 H 0.08 0.88 6.54 -51.93 -0.34 0.54 16 34 H 0.13 1.54 7.88 -52.49 -0.41 1.13 16 35 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 37 H 0.12 1.25 5.98 -52.48 -0.31 0.94 16 38 H 0.08 0.75 8.02 -51.93 -0.42 0.33 16 39 H 0.06 0.52 6.42 -51.93 -0.33 0.19 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.66 7.74 -51.93 -0.40 0.26 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.44 7.40 -51.93 -0.38 1.06 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -34.86 348.24 -10.85 -45.71 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.38 Total: 5.36 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -4.34 Total: 1.26 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: -0.79 Total: -59.97 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.08 Total: -15.04 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.86 -10.85 -45.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883656387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.226 kcal (2) G-P(sol) polarization free energy of solvation -34.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds