Wall clock time and date at job start Tue Mar 31 2020 12:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.72498 * 9 7 2 11 11 C 1.34778 * 119.99700 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00103 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99898 * 180.02562 * 11 10 9 14 14 C 1.46257 * 121.30957 * 0.02562 * 13 11 10 15 15 C 1.50190 * 110.72628 * 269.09813 * 14 13 11 16 16 C 1.38358 * 118.75798 * 131.99696 * 15 14 13 17 17 C 1.38048 * 120.67028 * 177.22867 * 16 15 14 18 18 C 1.38314 * 119.56453 * 359.73975 * 17 16 15 19 19 C 1.37584 * 120.09664 * 1.33763 * 18 17 16 20 20 C 1.39015 * 120.97761 * 311.52928 * 15 14 13 21 21 N 1.38597 * 124.81166 * 6.18571 * 20 15 14 22 22 C 1.47606 * 110.55513 * 203.88594 * 21 20 15 23 23 C 1.53706 * 107.56260 * 147.48430 * 22 21 20 24 24 C 1.54055 * 105.62072 * 0.02562 * 23 22 21 25 25 C 1.45961 * 117.19197 * 328.38470 * 21 20 15 26 26 H 1.08995 * 110.59601 * 325.53479 * 25 21 20 27 27 C 1.46294 * 121.31064 * 179.71596 * 13 11 10 28 28 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 30 30 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 31 31 H 0.97005 * 120.00530 * 0.02562 * 10 9 7 32 32 H 1.08996 * 109.22622 * 29.41806 * 14 13 11 33 33 H 1.08996 * 109.22559 * 148.78041 * 14 13 11 34 34 H 1.08000 * 119.66350 * 357.24331 * 16 15 14 35 35 H 1.08005 * 120.21399 * 179.74310 * 17 16 15 36 36 H 1.08004 * 119.95421 * 181.36409 * 18 17 16 37 37 H 1.08004 * 119.53896 * 180.14973 * 19 18 17 38 38 H 1.09002 * 109.83293 * 266.99003 * 22 21 20 39 39 H 1.08999 * 109.83869 * 27.97812 * 22 21 20 40 40 H 1.08993 * 110.21529 * 240.97077 * 23 22 21 41 41 H 1.08999 * 110.21147 * 119.04538 * 23 22 21 42 42 H 1.09006 * 110.44652 * 224.63814 * 24 23 22 43 43 H 1.08996 * 110.45280 * 102.08676 * 24 23 22 44 44 H 1.09002 * 109.96941 * 267.91476 * 27 13 11 45 45 H 1.09005 * 109.96159 * 29.20847 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 7 4.0000 -2.5751 0.0082 11 6 5.3251 -2.8213 0.0095 12 8 6.1151 -1.8971 0.0051 13 7 5.7744 -4.0919 0.0155 14 6 4.8497 -5.2250 0.0203 15 6 4.5301 -5.6444 1.4266 16 6 3.2068 -5.8468 1.7764 17 6 2.8723 -6.2875 3.0412 18 6 3.8721 -6.5336 3.9647 19 6 5.1887 -6.3134 3.6314 20 6 5.5396 -5.8372 2.3627 21 7 6.8798 -5.5550 2.1504 22 6 7.7280 -6.3614 3.0498 23 6 9.0384 -6.6626 2.3051 24 6 8.8985 -5.9851 0.9286 25 6 7.3864 -5.7078 0.7901 26 1 6.8885 -6.5362 0.2864 27 6 7.2062 -4.3920 0.0108 28 1 -0.4850 0.8400 -0.0004 29 1 3.8752 -0.6845 -0.8913 30 1 3.8746 -0.6756 0.8886 31 1 3.3697 -3.3124 0.0113 32 1 3.9284 -4.9386 -0.4870 33 1 5.3049 -6.0620 -0.5091 34 1 2.4278 -5.6584 1.0525 35 1 1.8367 -6.4391 3.3077 36 1 3.6190 -6.8995 4.9489 37 1 5.9623 -6.5109 4.3588 38 1 7.9403 -5.8002 3.9598 39 1 7.2213 -7.2939 3.2987 40 1 9.1644 -7.7385 2.1846 41 1 9.8851 -6.2419 2.8475 42 1 9.2365 -6.6554 0.1382 43 1 9.4611 -5.0519 0.9045 44 1 7.5582 -4.5114 -1.0139 45 1 7.7562 -3.5899 0.5031 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883656387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:46 Heat of formation + Delta-G solvation = 0.444713 kcal Electronic energy + Delta-G solvation = -27206.162465 eV Core-core repulsion = 23608.866259 eV Total energy + Delta-G solvation = -3597.296206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.22444 -40.62288 -38.90134 -37.02938 -36.20643 -34.42423 -33.87965 -32.50548 -31.63649 -29.76775 -29.37175 -27.31579 -26.25128 -24.32733 -23.55013 -22.81837 -21.54163 -21.29122 -20.87307 -19.40502 -18.31751 -18.29526 -17.78655 -17.43879 -16.46485 -16.39442 -16.24768 -15.80342 -15.42902 -15.39623 -15.11820 -14.98081 -14.62548 -14.43579 -14.23653 -13.98702 -13.71643 -13.58761 -13.14699 -13.05184 -12.93649 -12.91899 -12.69923 -12.42117 -12.28015 -12.11765 -11.94084 -11.70114 -11.64449 -11.42267 -11.25058 -10.91727 -10.75479 -10.16397 -9.73556 -9.50293 -8.53555 -8.40059 -6.46530 0.41575 0.52151 1.31940 1.33545 1.47818 1.74176 2.17629 2.28428 2.61966 2.82105 2.95262 3.17179 3.50776 3.61444 3.76329 3.86310 3.90550 4.07586 4.14823 4.15761 4.29809 4.43708 4.47681 4.54629 4.60782 4.62585 4.69211 4.73598 4.77598 4.91554 4.95597 4.98877 5.02682 5.08538 5.13242 5.22062 5.22514 5.36194 5.50537 5.53110 5.54607 5.68853 5.89791 5.94030 6.07097 6.19439 6.42037 6.53555 7.06248 7.18824 7.61748 8.74657 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.004241 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.649209 B = 6600.203856 C = 7737.817555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.031 3.969 3 Si 0.935 3.065 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.253 3.747 10 N -0.720 5.720 11 C 0.700 3.300 12 O -0.643 6.643 13 N -0.619 5.619 14 C 0.152 3.848 15 C -0.168 4.168 16 C -0.089 4.089 17 C -0.166 4.166 18 C -0.089 4.089 19 C -0.189 4.189 20 C 0.140 3.860 21 N -0.504 5.504 22 C 0.042 3.958 23 C -0.124 4.124 24 C -0.115 4.115 25 C 0.075 3.925 26 H 0.083 0.917 27 C 0.139 3.861 28 H 0.273 0.727 29 H 0.010 0.990 30 H 0.003 0.997 31 H 0.400 0.600 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.466 -21.243 4.776 27.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.169 4.169 3 Si 0.759 3.241 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.076 0.924 9 C 0.129 3.871 10 N -0.374 5.374 11 C 0.402 3.598 12 O -0.526 6.526 13 N -0.355 5.355 14 C 0.029 3.971 15 C -0.172 4.172 16 C -0.108 4.108 17 C -0.185 4.185 18 C -0.107 4.107 19 C -0.210 4.210 20 C 0.039 3.961 21 N -0.215 5.215 22 C -0.082 4.082 23 C -0.163 4.163 24 C -0.154 4.154 25 C -0.032 4.032 26 H 0.100 0.900 27 C 0.016 3.984 28 H 0.082 0.918 29 H 0.028 0.972 30 H 0.021 0.979 31 H 0.236 0.764 32 H 0.099 0.901 33 H 0.133 0.867 34 H 0.145 0.855 35 H 0.153 0.847 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.104 0.896 42 H 0.124 0.876 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.016 -19.936 4.828 26.651 hybrid contribution -0.763 0.328 -0.025 0.831 sum 16.254 -19.607 4.802 25.917 Atomic orbital electron populations 1.69967 1.07516 1.28599 1.50627 1.25514 0.95521 1.02402 0.93496 0.85895 0.79129 0.79508 0.79582 1.18674 1.19527 1.19067 1.21210 0.89602 0.94607 1.52735 0.92352 1.18930 0.93296 0.79727 0.95160 1.45209 1.04645 1.09804 1.77757 1.16093 0.82733 0.83339 0.77659 1.90802 1.56230 1.44492 1.61053 1.47016 1.07795 1.02963 1.77739 1.20320 0.94243 0.89218 0.93340 1.19878 0.93282 1.07535 0.96538 1.21097 0.94785 0.97272 0.97622 1.21238 1.00317 1.03147 0.93808 1.21187 0.92232 0.97472 0.99839 1.21475 0.97871 1.05478 0.96184 1.18791 0.88459 0.94412 0.94462 1.57750 1.01302 1.53993 1.08480 1.23037 0.93203 0.95851 0.96134 1.22297 0.96666 1.02128 0.95161 1.22433 0.91832 1.02321 0.98797 1.22713 0.97553 0.96127 0.86815 0.89962 1.21955 0.79508 0.96603 1.00312 0.91782 0.97232 0.97913 0.76353 0.90107 0.86736 0.85474 0.84717 0.83869 0.84214 0.90279 0.91069 0.89040 0.89559 0.87626 0.90551 0.89333 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.41 13.96 21.45 0.30 -56.11 16 2 C 0.03 1.82 5.47 84.65 0.46 2.28 16 3 Si 0.94 45.76 27.47 68.60 1.88 47.64 16 4 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -13.21 6.53 99.48 0.65 -12.56 16 7 C -0.54 -31.40 9.83 25.60 0.25 -31.15 16 8 H 0.06 3.52 7.84 -2.91 -0.02 3.50 16 9 C 0.25 13.49 4.50 85.64 0.39 13.87 16 10 N -0.72 -32.82 5.43 -482.30 -2.62 -35.44 16 11 C 0.70 30.63 8.33 179.05 1.49 32.12 16 12 O -0.64 -33.13 16.05 -3.99 -0.06 -33.19 16 13 N -0.62 -20.01 2.67 -844.36 -2.26 -22.26 16 14 C 0.15 3.91 4.87 85.52 0.42 4.32 16 15 C -0.17 -4.53 5.61 -19.81 -0.11 -4.64 16 16 C -0.09 -2.36 9.58 22.25 0.21 -2.14 16 17 C -0.17 -4.02 10.07 22.24 0.22 -3.79 16 18 C -0.09 -1.95 10.02 22.13 0.22 -1.73 16 19 C -0.19 -4.32 8.53 22.54 0.19 -4.13 16 20 C 0.14 3.60 5.83 38.68 0.23 3.83 16 21 N -0.50 -11.58 4.42 -665.97 -2.95 -14.53 16 22 C 0.04 0.67 5.24 86.41 0.45 1.12 16 23 C -0.12 -1.31 6.92 31.19 0.22 -1.09 16 24 C -0.12 -1.42 6.47 31.41 0.20 -1.22 16 25 C 0.07 1.41 2.48 45.88 0.11 1.52 16 26 H 0.08 1.36 6.35 -2.39 -0.02 1.35 16 27 C 0.14 3.60 5.58 86.75 0.48 4.09 16 28 H 0.27 15.42 8.31 -92.71 -0.77 14.64 16 29 H 0.01 0.53 7.58 -2.39 -0.02 0.52 16 30 H 0.00 0.17 7.18 -2.39 -0.02 0.15 16 31 H 0.40 16.49 6.16 -92.70 -0.57 15.92 16 32 H 0.08 2.13 6.10 -2.39 -0.01 2.11 16 33 H 0.11 2.19 6.54 -2.39 -0.02 2.17 16 34 H 0.13 3.19 7.88 -2.91 -0.02 3.17 16 35 H 0.13 2.80 8.06 -2.91 -0.02 2.77 16 36 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 37 H 0.14 2.57 5.98 -2.91 -0.02 2.56 16 38 H 0.08 1.28 8.02 -2.39 -0.02 1.26 16 39 H 0.07 1.00 6.42 -2.39 -0.02 0.98 16 40 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.11 0.79 8.14 -2.38 -0.02 0.78 16 43 H 0.08 1.06 7.74 -2.39 -0.02 1.04 16 44 H 0.09 1.89 8.14 -2.39 -0.02 1.88 16 45 H 0.06 2.04 7.40 -2.38 -0.02 2.02 16 Total: -1.00 -76.23 348.24 0.12 -76.11 By element: Atomic # 1 Polarization: 24.14 SS G_CDS: 0.38 Total: 24.52 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: 5.44 Total: 13.27 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -7.52 Total: -128.34 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.06 Total: -33.19 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.88 Total: 47.64 kcal Total: -76.23 0.12 -76.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883656387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.550 kcal (2) G-P(sol) polarization free energy of solvation -76.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds