Wall clock time and date at job start Tue Mar 31 2020 11:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00320 * 2 1 4 4 H 1.48510 * 109.47266 * 270.00305 * 3 2 1 5 5 H 1.48504 * 109.47048 * 29.99856 * 3 2 1 6 6 H 1.48498 * 109.47273 * 150.00500 * 3 2 1 7 7 C 1.37878 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00135 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00018 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47256 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47168 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47218 * 179.97438 * 11 10 9 13 13 O 1.42101 * 110.54272 * 291.62572 * 12 11 10 14 14 O 1.42102 * 110.54259 * 68.37729 * 12 11 10 15 15 N 1.65600 * 104.45301 * 179.97438 * 12 11 10 16 16 C 1.46501 * 120.00171 * 270.00308 * 15 12 11 17 17 C 1.53002 * 109.46996 * 94.99885 * 16 15 12 18 18 C 1.52996 * 109.46885 * 180.02562 * 17 16 15 19 19 C 1.53003 * 117.49762 * 243.61745 * 18 17 16 20 20 C 1.53001 * 60.00033 * 252.50948 * 19 18 17 21 21 C 1.46501 * 119.99771 * 89.99902 * 15 12 11 22 22 C 1.53001 * 109.47131 * 95.00187 * 21 15 12 23 23 C 1.52996 * 117.49887 * 243.74323 * 22 21 15 24 24 C 1.52998 * 117.49565 * 175.08448 * 22 21 15 25 25 H 0.97001 * 119.99731 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47156 * 59.99838 * 9 7 2 27 27 H 1.09007 * 109.46968 * 299.99361 * 9 7 2 28 28 H 1.09004 * 109.47556 * 59.99472 * 10 9 7 29 29 H 1.09001 * 109.47255 * 299.99651 * 10 9 7 30 30 H 1.09001 * 109.47469 * 59.99836 * 11 10 9 31 31 H 1.08998 * 109.47079 * 299.99561 * 11 10 9 32 32 H 1.08996 * 109.46991 * 214.99613 * 16 15 12 33 33 H 1.08997 * 109.46740 * 334.99656 * 16 15 12 34 34 H 1.09002 * 109.46715 * 299.99457 * 17 16 15 35 35 H 1.09001 * 109.47266 * 59.99884 * 17 16 15 36 36 H 1.08996 * 115.55540 * 29.32618 * 18 17 16 37 37 H 1.09001 * 117.49718 * 0.02562 * 19 18 17 38 38 H 1.09007 * 117.49696 * 145.01839 * 19 18 17 39 39 H 1.08998 * 117.49983 * 252.50767 * 20 19 18 40 40 H 1.08996 * 117.49720 * 107.49015 * 20 19 18 41 41 H 1.09004 * 109.47017 * 215.00520 * 21 15 12 42 42 H 1.09000 * 109.47101 * 334.99951 * 21 15 12 43 43 H 1.08996 * 115.54756 * 29.42095 * 22 21 15 44 44 H 1.08999 * 117.49749 * 0.02562 * 23 22 21 45 45 H 1.09000 * 117.49433 * 145.02078 * 23 22 21 46 46 H 1.09004 * 117.49968 * 214.98139 * 24 22 21 47 47 H 1.09002 * 117.50352 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1942 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5515 -2.6367 -0.0035 12 16 6.1561 -4.3470 -0.0041 13 8 5.8609 -4.9806 1.2330 14 8 5.8590 -4.9804 -1.2410 15 7 7.8058 -4.2021 -0.0062 16 6 8.5339 -4.1381 -1.2758 17 6 8.7702 -2.6747 -1.6549 18 6 9.5301 -2.6079 -2.9811 19 6 10.9291 -1.9885 -2.9633 20 6 9.7624 -1.2251 -3.5933 21 6 8.5370 -4.1380 1.2617 22 6 9.0256 -5.5376 1.6400 23 6 8.4653 -6.1593 2.9208 24 6 9.9133 -5.6648 2.8796 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6806 0.8888 27 1 3.8746 -0.6802 -0.8912 28 1 3.6578 -3.1500 -0.8924 29 1 3.6586 -3.1511 0.8875 30 1 5.9156 -2.1233 0.8864 31 1 5.9141 -2.1225 -0.8936 32 1 9.4928 -4.6456 -1.1707 33 1 7.9484 -4.6255 -2.0553 34 1 7.8113 -2.1673 -1.7601 35 1 9.3557 -2.1874 -0.8753 36 1 9.3558 -3.4383 -3.6653 37 1 11.3082 -1.6291 -2.0066 38 1 11.6754 -2.4116 -3.6358 39 1 9.7412 -1.1458 -4.6802 40 1 9.3738 -0.3630 -3.0513 41 1 9.3925 -3.4710 1.1544 42 1 7.8774 -3.7599 2.0428 43 1 9.2302 -6.2061 0.8038 44 1 7.7482 -5.5713 3.4936 45 1 8.3015 -7.2369 2.9272 46 1 10.7017 -6.4173 2.8591 47 1 10.1489 -4.7514 3.4259 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885472104.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:48 Heat of formation + Delta-G solvation = -40.191426 kcal Electronic energy + Delta-G solvation = -24906.015758 eV Core-core repulsion = 21410.108637 eV Total energy + Delta-G solvation = -3495.907121 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.55985 -37.75271 -36.91774 -35.78389 -35.48181 -34.81291 -32.21903 -30.63800 -28.38659 -26.76215 -23.96878 -23.17394 -22.59497 -22.43168 -21.03211 -20.63043 -20.29916 -18.78976 -17.72060 -16.92603 -16.61405 -16.13034 -15.78204 -15.46879 -15.01482 -14.58944 -14.41533 -14.30955 -14.18920 -13.86140 -13.05988 -12.98875 -12.82302 -12.38541 -12.22296 -12.08299 -11.94094 -11.88808 -11.82761 -11.76351 -11.61715 -11.58332 -11.39100 -11.24651 -10.98100 -10.95236 -10.64987 -10.50623 -10.19479 -10.08583 -10.05354 -9.87803 -9.69877 -9.28780 -9.05780 -8.59261 -6.08940 -4.08160 0.37934 2.65034 3.25827 3.33399 3.35379 3.53132 3.65728 3.96429 4.21377 4.37555 4.39718 4.52001 4.55408 4.64703 4.67932 4.78687 4.87388 5.00964 5.04067 5.04941 5.08542 5.20542 5.24637 5.29740 5.36026 5.39630 5.45554 5.51377 5.59872 5.65884 5.73472 5.80965 5.83959 5.86550 5.92071 6.01991 6.08121 6.11416 6.14353 6.27076 6.47106 6.66532 7.11959 7.26038 7.70545 8.47246 8.95537 9.52203 11.04401 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.003975 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.858140 B = 7042.575343 C = 8735.591711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.097 4.097 11 C -0.618 4.618 12 S 2.596 3.404 13 O -0.950 6.950 14 O -0.958 6.958 15 N -1.000 6.000 16 C 0.117 3.883 17 C -0.116 4.116 18 C -0.150 4.150 19 C -0.181 4.181 20 C -0.180 4.180 21 C 0.157 3.843 22 C -0.173 4.173 23 C -0.167 4.167 24 C -0.181 4.181 25 H 0.264 0.736 26 H 0.020 0.980 27 H 0.015 0.985 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.601 -6.956 -0.639 26.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.042 4.042 10 C -0.136 4.136 11 C -0.749 4.749 12 S 2.693 3.307 13 O -0.940 6.940 14 O -0.948 6.948 15 N -0.834 5.834 16 C -0.008 4.008 17 C -0.155 4.155 18 C -0.169 4.169 19 C -0.218 4.218 20 C -0.217 4.217 21 C 0.031 3.969 22 C -0.192 4.192 23 C -0.204 4.204 24 C -0.219 4.219 25 H 0.074 0.926 26 H 0.038 0.962 27 H 0.034 0.966 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.126 0.874 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.110 0.890 46 H 0.110 0.890 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 24.990 -7.679 -0.632 26.151 hybrid contribution 0.561 1.701 -0.078 1.793 sum 25.552 -5.978 -0.710 26.251 Atomic orbital electron populations 1.69914 1.06275 1.26972 1.50716 1.25023 0.94754 0.99148 0.94462 0.86783 0.80321 0.83651 0.78548 1.20199 1.21243 1.19086 1.21139 0.89254 0.94775 1.51318 0.90725 1.19525 0.97322 0.90728 0.96675 1.21303 0.86681 1.02911 1.02721 1.30721 1.09432 1.23818 1.10979 1.05519 0.72701 0.78148 0.74377 1.93582 1.82661 1.72836 1.44936 1.93555 1.82747 1.73146 1.45389 1.57688 1.24990 1.89709 1.11054 1.21380 0.98413 0.96211 0.84805 1.21726 1.00713 0.97670 0.95366 1.22219 0.98448 0.97352 0.98909 1.23034 0.91421 1.04575 1.02745 1.22976 1.02899 0.95361 1.00513 1.20798 0.96923 0.94915 0.84258 1.22734 1.04809 0.98982 0.92719 1.23027 0.95808 1.01265 1.00270 1.22970 0.94300 1.03283 1.01301 0.92622 0.96215 0.96648 0.91074 0.91020 0.85568 0.85538 0.89976 0.88630 0.91166 0.91074 0.87389 0.88888 0.88998 0.88767 0.88700 0.90116 0.89901 0.87625 0.88046 0.89014 0.88983 0.88783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.53 -15.04 9.66 -34.44 -0.33 -15.38 16 8 H 0.07 2.28 7.99 -52.48 -0.42 1.87 16 9 C 0.00 -0.09 4.04 -27.88 -0.11 -0.20 16 10 C -0.10 -1.90 5.16 -26.74 -0.14 -2.04 16 11 C -0.62 -9.06 6.18 37.16 0.23 -8.83 16 12 S 2.60 37.68 5.37 -107.50 -0.58 37.11 16 13 O -0.95 -15.99 16.99 -57.54 -0.98 -16.97 16 14 O -0.96 -16.54 16.53 -57.54 -0.95 -17.49 16 15 N -1.00 -10.68 2.71 -114.38 -0.31 -10.99 16 16 C 0.12 1.07 5.62 -4.04 -0.02 1.05 16 17 C -0.12 -0.98 5.82 -26.73 -0.16 -1.13 16 18 C -0.15 -1.19 5.74 -90.62 -0.52 -1.71 16 19 C -0.18 -1.27 10.18 -26.73 -0.27 -1.54 16 20 C -0.18 -1.43 10.25 -26.73 -0.27 -1.70 16 21 C 0.16 1.44 5.54 -4.04 -0.02 1.42 16 22 C -0.17 -1.64 6.01 -90.62 -0.54 -2.19 16 23 C -0.17 -1.68 10.18 -26.70 -0.27 -1.96 16 24 C -0.18 -1.43 10.25 -26.70 -0.27 -1.70 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 27 H 0.02 0.35 7.57 -51.92 -0.39 -0.05 16 28 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.13 1.59 8.14 -51.92 -0.42 1.17 16 31 H 0.13 1.63 6.96 -51.93 -0.36 1.26 16 32 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 33 H 0.10 0.98 6.81 -51.93 -0.35 0.62 16 34 H 0.07 0.65 6.96 -51.93 -0.36 0.29 16 35 H 0.07 0.54 7.88 -51.93 -0.41 0.13 16 36 H 0.11 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.09 0.62 8.03 -51.93 -0.42 0.20 16 38 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 42 H 0.08 0.77 7.34 -51.93 -0.38 0.39 16 43 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.10 1.10 8.03 -51.93 -0.42 0.68 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 392.67 15.07 5.92 5.92 Total: -1.00 -34.15 392.67 -12.15 -46.29 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -8.54 Total: 0.38 kcal Atomic # 6 Polarization: -31.23 SS G_CDS: -2.81 Total: -34.04 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.46 Total: -37.96 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -1.93 Total: -34.46 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: 37.68 SS G_CDS: -0.58 Total: 37.11 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.15 -12.15 -46.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885472104.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.104 kcal (2) G-P(sol) polarization free energy of solvation -34.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds