Wall clock time and date at job start Tue Mar 31 2020 11:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00320 * 2 1 4 4 H 1.48510 * 109.47266 * 270.00305 * 3 2 1 5 5 H 1.48504 * 109.47048 * 29.99856 * 3 2 1 6 6 H 1.48498 * 109.47273 * 150.00500 * 3 2 1 7 7 C 1.37878 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00135 * 359.97438 * 7 2 1 9 9 C 1.50704 * 120.00018 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47256 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47168 * 179.97438 * 10 9 7 12 12 S 1.81399 * 109.47218 * 179.97438 * 11 10 9 13 13 O 1.42101 * 110.54272 * 291.62572 * 12 11 10 14 14 O 1.42102 * 110.54259 * 68.37729 * 12 11 10 15 15 N 1.65600 * 104.45301 * 179.97438 * 12 11 10 16 16 C 1.46501 * 120.00171 * 270.00308 * 15 12 11 17 17 C 1.53002 * 109.46996 * 94.99885 * 16 15 12 18 18 C 1.52996 * 109.46885 * 180.02562 * 17 16 15 19 19 C 1.53003 * 117.49762 * 243.61745 * 18 17 16 20 20 C 1.53001 * 60.00033 * 252.50948 * 19 18 17 21 21 C 1.46501 * 119.99771 * 89.99902 * 15 12 11 22 22 C 1.53001 * 109.47131 * 95.00187 * 21 15 12 23 23 C 1.52996 * 117.49887 * 243.74323 * 22 21 15 24 24 C 1.52998 * 117.49565 * 175.08448 * 22 21 15 25 25 H 0.97001 * 119.99731 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47156 * 59.99838 * 9 7 2 27 27 H 1.09007 * 109.46968 * 299.99361 * 9 7 2 28 28 H 1.09004 * 109.47556 * 59.99472 * 10 9 7 29 29 H 1.09001 * 109.47255 * 299.99651 * 10 9 7 30 30 H 1.09001 * 109.47469 * 59.99836 * 11 10 9 31 31 H 1.08998 * 109.47079 * 299.99561 * 11 10 9 32 32 H 1.08996 * 109.46991 * 214.99613 * 16 15 12 33 33 H 1.08997 * 109.46740 * 334.99656 * 16 15 12 34 34 H 1.09002 * 109.46715 * 299.99457 * 17 16 15 35 35 H 1.09001 * 109.47266 * 59.99884 * 17 16 15 36 36 H 1.08996 * 115.55540 * 29.32618 * 18 17 16 37 37 H 1.09001 * 117.49718 * 0.02562 * 19 18 17 38 38 H 1.09007 * 117.49696 * 145.01839 * 19 18 17 39 39 H 1.08998 * 117.49983 * 252.50767 * 20 19 18 40 40 H 1.08996 * 117.49720 * 107.49015 * 20 19 18 41 41 H 1.09004 * 109.47017 * 215.00520 * 21 15 12 42 42 H 1.09000 * 109.47101 * 334.99951 * 21 15 12 43 43 H 1.08996 * 115.54756 * 29.42095 * 22 21 15 44 44 H 1.08999 * 117.49749 * 0.02562 * 23 22 21 45 45 H 1.09000 * 117.49433 * 145.02078 * 23 22 21 46 46 H 1.09004 * 117.49968 * 214.98139 * 24 22 21 47 47 H 1.09002 * 117.50352 * 0.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4002 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1942 -0.0011 10 6 4.0215 -2.6366 -0.0023 11 6 5.5515 -2.6367 -0.0035 12 16 6.1561 -4.3470 -0.0041 13 8 5.8609 -4.9806 1.2330 14 8 5.8590 -4.9804 -1.2410 15 7 7.8058 -4.2021 -0.0062 16 6 8.5339 -4.1381 -1.2758 17 6 8.7702 -2.6747 -1.6549 18 6 9.5301 -2.6079 -2.9811 19 6 10.9291 -1.9885 -2.9633 20 6 9.7624 -1.2251 -3.5933 21 6 8.5370 -4.1380 1.2617 22 6 9.0256 -5.5376 1.6400 23 6 8.4653 -6.1593 2.9208 24 6 9.9133 -5.6648 2.8796 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6806 0.8888 27 1 3.8746 -0.6802 -0.8912 28 1 3.6578 -3.1500 -0.8924 29 1 3.6586 -3.1511 0.8875 30 1 5.9156 -2.1233 0.8864 31 1 5.9141 -2.1225 -0.8936 32 1 9.4928 -4.6456 -1.1707 33 1 7.9484 -4.6255 -2.0553 34 1 7.8113 -2.1673 -1.7601 35 1 9.3557 -2.1874 -0.8753 36 1 9.3558 -3.4383 -3.6653 37 1 11.3082 -1.6291 -2.0066 38 1 11.6754 -2.4116 -3.6358 39 1 9.7412 -1.1458 -4.6802 40 1 9.3738 -0.3630 -3.0513 41 1 9.3925 -3.4710 1.1544 42 1 7.8774 -3.7599 2.0428 43 1 9.2302 -6.2061 0.8038 44 1 7.7482 -5.5713 3.4936 45 1 8.3015 -7.2369 2.9272 46 1 10.7017 -6.4173 2.8591 47 1 10.1489 -4.7514 3.4259 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885472104.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:47 Heat of formation + Delta-G solvation = -60.863920 kcal Electronic energy + Delta-G solvation = -24906.912185 eV Core-core repulsion = 21410.108637 eV Total energy + Delta-G solvation = -3496.803548 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 315.166 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.25359 -38.51201 -38.01904 -37.02003 -36.52919 -36.25157 -34.26696 -31.32454 -30.17804 -27.50087 -25.51281 -24.19256 -23.14552 -23.09689 -22.18976 -21.72455 -21.11884 -19.84037 -18.98706 -18.74520 -17.59937 -17.31041 -16.55282 -16.42755 -16.22718 -15.94119 -15.55830 -15.23761 -15.10796 -14.87410 -14.57122 -14.12195 -13.79852 -13.70536 -13.59676 -13.24849 -13.21474 -13.15753 -12.85128 -12.71556 -12.61510 -12.56168 -12.33343 -12.28478 -12.08047 -11.98700 -11.85084 -11.67100 -11.43744 -11.37157 -11.24832 -11.09562 -10.78946 -10.77189 -10.68813 -9.94342 -8.31188 -6.37351 -0.77361 1.35537 1.38166 1.49811 1.65649 2.35188 2.81052 2.95592 2.97746 3.03809 3.14439 3.57551 3.76978 3.82616 3.86795 3.91260 4.06102 4.07937 4.14355 4.23615 4.30110 4.39520 4.43593 4.49445 4.55305 4.66262 4.72321 4.80122 4.83975 4.87275 4.89265 4.91745 4.96489 5.11347 5.11678 5.16697 5.25239 5.30911 5.33604 5.34176 5.38917 5.43194 5.49397 5.60829 5.68835 6.23714 6.70647 7.27322 8.85898 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.003975 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.858140 B = 7042.575343 C = 8735.591711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.239 1.239 7 C -0.545 4.545 8 H 0.029 0.971 9 C -0.004 4.004 10 C -0.102 4.102 11 C -0.613 4.613 12 S 2.609 3.391 13 O -0.978 6.978 14 O -0.991 6.991 15 N -0.988 5.988 16 C 0.115 3.885 17 C -0.113 4.113 18 C -0.159 4.159 19 C -0.170 4.170 20 C -0.192 4.192 21 C 0.150 3.850 22 C -0.181 4.181 23 C -0.194 4.194 24 C -0.154 4.154 25 H 0.267 0.733 26 H 0.033 0.967 27 H 0.030 0.970 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.114 0.886 42 H 0.081 0.919 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.598 -5.243 -0.414 30.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.162 1.162 7 C -0.583 4.583 8 H 0.047 0.953 9 C -0.042 4.042 10 C -0.141 4.141 11 C -0.744 4.744 12 S 2.706 3.294 13 O -0.968 6.968 14 O -0.981 6.981 15 N -0.825 5.825 16 C -0.009 4.009 17 C -0.152 4.152 18 C -0.178 4.178 19 C -0.207 4.207 20 C -0.229 4.229 21 C 0.025 3.975 22 C -0.201 4.201 23 C -0.231 4.231 24 C -0.192 4.192 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.171 0.829 31 H 0.167 0.833 32 H 0.123 0.877 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.132 0.868 42 H 0.100 0.900 43 H 0.121 0.879 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.123 0.877 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 28.995 -5.990 -0.408 29.610 hybrid contribution -0.712 1.057 -0.154 1.283 sum 28.283 -4.933 -0.562 28.715 Atomic orbital electron populations 1.70087 1.08519 1.28347 1.52273 1.26113 0.95704 1.03882 0.93822 0.85599 0.79700 0.77583 0.79428 1.18906 1.20989 1.16174 1.21553 0.92336 0.93298 1.51136 0.95270 1.19491 0.93710 0.93347 0.97656 1.21163 0.90535 1.00507 1.01936 1.30643 1.05435 1.24751 1.13540 1.04854 0.73734 0.77805 0.73039 1.93546 1.83770 1.73597 1.45905 1.93511 1.83922 1.74046 1.46650 1.57352 1.23215 1.89442 1.12464 1.21527 0.98757 0.97141 0.83498 1.21705 1.00635 0.96821 0.96076 1.22228 0.99379 0.97383 0.98788 1.23099 0.90993 1.03456 1.03106 1.23035 1.03876 0.95261 1.00702 1.21076 0.97762 0.95435 0.83236 1.22798 1.05477 0.99066 0.92783 1.23046 0.97686 1.00918 1.01497 1.23045 0.92931 1.03830 0.99394 0.92387 0.94918 0.95192 0.92204 0.91958 0.82855 0.83251 0.87715 0.90130 0.92058 0.89509 0.87503 0.88056 0.88243 0.88697 0.88937 0.86759 0.90042 0.87905 0.89328 0.89646 0.87743 0.87237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.38 13.96 21.45 0.30 -60.09 16 2 C 0.00 0.09 5.47 84.65 0.46 0.55 16 3 Si 0.95 43.32 27.47 68.60 1.88 45.20 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.24 -9.71 6.54 99.48 0.65 -9.05 16 7 C -0.55 -31.93 9.66 25.60 0.25 -31.68 16 8 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 9 C 0.00 -0.16 4.04 29.85 0.12 -0.04 16 10 C -0.10 -4.01 5.16 30.59 0.16 -3.85 16 11 C -0.61 -16.74 6.18 71.98 0.44 -16.30 16 12 S 2.61 73.80 5.37 -56.49 -0.30 73.50 16 13 O -0.98 -32.96 16.99 -127.65 -2.17 -35.13 16 14 O -0.99 -34.38 16.53 -127.65 -2.11 -36.49 16 15 N -0.99 -18.90 2.71 -515.78 -1.40 -20.30 16 16 C 0.12 1.82 5.62 86.38 0.49 2.31 16 17 C -0.11 -1.57 5.82 30.59 0.18 -1.39 16 18 C -0.16 -2.13 5.74 -10.79 -0.06 -2.19 16 19 C -0.17 -1.87 10.18 30.60 0.31 -1.56 16 20 C -0.19 -2.61 10.25 30.60 0.31 -2.29 16 21 C 0.15 2.31 5.54 86.38 0.48 2.79 16 22 C -0.18 -3.06 6.01 -10.80 -0.06 -3.12 16 23 C -0.19 -3.77 10.18 30.62 0.31 -3.46 16 24 C -0.15 -2.01 10.25 30.62 0.31 -1.69 16 25 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 26 H 0.03 1.41 7.20 -2.39 -0.02 1.40 16 27 H 0.03 1.28 7.57 -2.38 -0.02 1.27 16 28 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 29 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.15 3.35 8.14 -2.39 -0.02 3.33 16 31 H 0.15 3.40 6.96 -2.39 -0.02 3.39 16 32 H 0.10 1.22 8.11 -2.39 -0.02 1.20 16 33 H 0.08 1.55 6.81 -2.39 -0.02 1.54 16 34 H 0.06 0.96 6.96 -2.39 -0.02 0.94 16 35 H 0.09 0.93 7.88 -2.39 -0.02 0.91 16 36 H 0.11 1.44 8.07 -2.39 -0.02 1.42 16 37 H 0.10 0.96 8.03 -2.39 -0.02 0.94 16 38 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.11 1.04 8.11 -2.38 -0.02 1.02 16 42 H 0.08 1.31 7.34 -2.39 -0.02 1.30 16 43 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.09 1.92 8.03 -2.39 -0.02 1.90 16 45 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -76.47 392.67 0.76 -75.71 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.86 Total: 19.52 kcal Atomic # 6 Polarization: -65.63 SS G_CDS: 3.70 Total: -61.93 kcal Atomic # 7 Polarization: -79.28 SS G_CDS: -1.10 Total: -80.38 kcal Atomic # 8 Polarization: -67.34 SS G_CDS: -4.28 Total: -71.62 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.20 kcal Atomic # 16 Polarization: 73.80 SS G_CDS: -0.30 Total: 73.50 kcal Total: -76.47 0.76 -75.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885472104.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.843 kcal (2) G-P(sol) polarization free energy of solvation -76.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds