Wall clock time and date at job start Tue Mar 31 2020 10:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20759 * 120.00189 * 2 1 4 4 C 1.50705 * 119.99985 * 179.97438 * 2 1 3 5 5 H 1.08995 * 109.46975 * 330.00279 * 4 2 1 6 6 C 1.52999 * 109.47194 * 89.99967 * 4 2 1 7 7 C 1.52992 * 109.47195 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47115 * 299.99987 * 7 6 4 9 9 H 1.08998 * 109.47556 * 299.99609 * 8 7 6 10 10 N 1.46506 * 109.46951 * 180.02562 * 8 7 6 11 11 C 1.34774 * 120.00091 * 85.00143 * 10 8 7 12 12 O 1.21547 * 120.00154 * 359.97438 * 11 10 8 13 13 C 1.47887 * 120.00056 * 180.02562 * 11 10 8 14 14 C 1.39915 * 120.02538 * 0.28435 * 13 11 10 15 15 C 1.38329 * 120.35629 * 180.25949 * 14 13 11 16 16 C 1.37753 * 120.41353 * 359.45232 * 15 14 13 17 17 C 1.40746 * 120.03917 * 0.27401 * 16 15 14 18 18 C 1.41437 * 120.17736 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99989 * 335.00001 * 18 17 16 20 20 C 1.39939 * 119.99721 * 155.00132 * 18 17 16 21 21 N 1.30824 * 120.00242 * 342.54013 * 20 18 17 22 22 Si 1.86803 * 119.99771 * 162.54476 * 20 18 17 23 23 H 1.48496 * 109.47144 * 59.99561 * 22 20 18 24 24 H 1.48503 * 109.47046 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46815 * 299.99367 * 22 20 18 26 26 C 1.38998 * 120.02345 * 180.02562 * 13 11 10 27 27 C 1.53003 * 109.47095 * 60.00303 * 8 7 6 28 28 C 1.52998 * 109.46645 * 299.99668 * 27 8 7 29 29 H 1.09000 * 109.46921 * 270.00152 * 1 2 3 30 30 H 1.09008 * 109.46786 * 30.00069 * 1 2 3 31 31 H 1.08997 * 109.47080 * 149.99972 * 1 2 3 32 32 H 1.09006 * 109.46989 * 300.00255 * 6 4 2 33 33 H 1.09003 * 109.46973 * 59.99993 * 6 4 2 34 34 H 1.09003 * 109.47088 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.47270 * 60.00047 * 7 6 4 36 36 H 0.96997 * 119.99633 * 264.99837 * 10 8 7 37 37 H 1.07999 * 119.81935 * 359.97438 * 14 13 11 38 38 H 1.08007 * 119.79199 * 179.72996 * 15 14 13 39 39 H 1.07998 * 119.97567 * 180.25533 * 16 15 14 40 40 H 0.96993 * 119.99950 * 180.02562 * 21 20 18 41 41 H 1.07995 * 120.20481 * 0.03961 * 26 13 11 42 42 H 1.08995 * 109.47192 * 59.99682 * 27 8 7 43 43 H 1.08998 * 109.46805 * 179.97438 * 27 8 7 44 44 H 1.09003 * 109.46842 * 180.02562 * 28 27 8 45 45 H 1.08995 * 109.47337 * 299.99925 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.6714 -2.0645 0.5147 6 6 2.5155 -1.7475 -1.4417 7 6 3.2799 -3.0728 -1.4411 8 6 4.6168 -2.8901 -0.7198 9 1 5.2063 -2.1310 -1.2338 10 7 5.3490 -4.1591 -0.7198 11 6 6.1131 -4.4962 -1.7775 12 8 6.1944 -3.7477 -2.7317 13 6 6.8518 -5.7773 -1.7777 14 6 6.7530 -6.6426 -0.6827 15 6 7.4452 -7.8402 -0.6733 16 6 8.2306 -8.2001 -1.7463 17 6 8.3377 -7.3452 -2.8592 18 6 9.1437 -7.7116 -3.9622 19 1 9.9680 -8.3958 -3.8251 20 6 8.8731 -7.1874 -5.2312 21 7 7.7080 -6.6475 -5.4811 22 14 10.1756 -7.2588 -6.5684 23 1 10.5350 -8.6749 -6.8342 24 1 9.6444 -6.6418 -7.8103 25 1 11.3826 -6.5169 -6.1237 26 6 7.6404 -6.1253 -2.8682 27 6 4.3618 -2.4478 0.7226 28 6 3.5974 -1.1225 0.7219 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.5630 -1.8780 -1.9555 33 1 3.1046 -0.9880 -1.9559 34 1 3.4620 -3.3876 -2.4687 35 1 2.6904 -3.8320 -0.9271 36 1 5.2838 -4.7565 0.0416 37 1 6.1367 -6.3719 0.1618 38 1 7.3659 -8.4993 0.1786 39 1 8.7647 -9.1387 -1.7333 40 1 7.5204 -6.2845 -6.3608 41 1 7.7168 -5.4621 -3.7171 42 1 3.7723 -3.2070 1.2366 43 1 5.3142 -2.3182 1.2366 44 1 3.4161 -0.8072 1.7495 45 1 4.1868 -0.3633 0.2079 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887262586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:16 Heat of formation + Delta-G solvation = -83.452319 kcal Electronic energy + Delta-G solvation = -25570.623784 eV Core-core repulsion = 21937.396779 eV Total energy + Delta-G solvation = -3633.227006 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.38837 -39.30677 -37.72312 -36.75562 -33.99350 -33.62666 -31.34320 -30.88587 -30.17134 -29.45029 -28.66831 -25.33114 -23.83572 -22.91600 -21.98817 -20.97325 -20.28364 -19.68476 -19.28859 -17.71840 -16.58521 -16.21664 -15.65876 -15.60955 -15.25014 -15.07399 -14.67198 -14.54663 -14.07111 -13.87969 -13.58194 -13.45784 -13.21408 -12.81773 -12.68943 -12.55368 -12.46612 -12.38590 -12.21209 -11.73059 -11.66094 -11.37012 -11.30223 -11.15603 -11.08518 -10.76851 -10.63093 -10.51302 -10.37800 -10.02780 -9.71420 -9.69268 -9.21428 -8.98781 -8.64219 -7.63429 -7.52364 -6.80208 -4.41968 1.68974 2.21149 2.81853 3.07436 3.09053 3.16394 3.57960 3.80489 3.86453 3.92121 4.41600 4.49950 4.64151 4.71272 4.89068 4.96033 5.02285 5.10085 5.17521 5.26983 5.28529 5.34224 5.49098 5.60008 5.60766 5.67258 5.73703 5.81403 5.93536 5.99086 6.02928 6.06598 6.26110 6.26495 6.33092 6.71626 6.90642 6.98852 7.02076 7.20912 7.24943 7.37744 7.69688 7.75788 7.92223 8.10459 8.19404 8.50101 8.79896 8.83037 8.96935 10.14615 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.002682 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.868874 B =10436.949606 C =11294.694960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.359 3.641 3 O -0.457 6.457 4 C -0.138 4.138 5 H 0.097 0.903 6 C -0.102 4.102 7 C -0.128 4.128 8 C 0.146 3.854 9 H 0.086 0.914 10 N -0.734 5.734 11 C 0.564 3.436 12 O -0.545 6.545 13 C -0.128 4.128 14 C -0.218 4.218 15 C -0.098 4.098 16 C -0.212 4.212 17 C 0.098 3.902 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.784 5.784 22 Si 0.911 3.089 23 H -0.265 1.265 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.092 4.092 27 C -0.125 4.125 28 C -0.103 4.103 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.285 0.715 41 H 0.134 0.866 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.636 7.669 10.515 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.235 3.765 3 O -0.331 6.331 4 C -0.157 4.157 5 H 0.115 0.885 6 C -0.140 4.140 7 C -0.166 4.166 8 C 0.041 3.959 9 H 0.104 0.896 10 N -0.386 5.386 11 C 0.355 3.645 12 O -0.423 6.423 13 C -0.132 4.132 14 C -0.238 4.238 15 C -0.117 4.117 16 C -0.232 4.232 17 C 0.096 3.904 18 C -0.489 4.489 19 H 0.099 0.901 20 C -0.146 4.146 21 N -0.408 5.408 22 Si 0.735 3.265 23 H -0.190 1.190 24 H -0.202 1.202 25 H -0.187 1.187 26 C -0.112 4.112 27 C -0.163 4.163 28 C -0.141 4.141 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.096 0.904 41 H 0.151 0.849 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.395 8.880 9.612 18.025 hybrid contribution 0.253 -0.532 -0.216 0.628 sum -12.143 8.348 9.396 17.476 Atomic orbital electron populations 1.22328 0.94601 1.04830 1.04536 1.24694 0.91868 0.90194 0.69792 1.90407 1.72069 1.35168 1.35415 1.21848 0.97943 0.96814 0.99142 0.88502 1.21396 1.00908 0.98205 0.93484 1.21926 0.95899 0.96482 1.02331 1.20855 0.92459 0.87052 0.95581 0.89620 1.46017 1.49580 1.21614 1.21434 1.18852 0.77750 0.86539 0.81349 1.90693 1.64312 1.52863 1.34466 1.19487 1.02415 0.93806 0.97457 1.20333 1.07560 0.97711 0.98178 1.20437 0.97968 0.95920 0.97345 1.21101 1.05452 0.99719 0.96916 1.17604 0.90718 0.90003 0.92087 1.19554 1.13011 1.24546 0.91825 0.90121 1.25961 0.95481 0.92963 1.00178 1.69775 1.20014 1.27468 1.23539 0.86325 0.81454 0.79541 0.79206 1.18972 1.20223 1.18717 1.21637 0.96697 0.96526 0.96339 1.21795 1.00952 0.97252 0.96260 1.21380 0.94624 0.97724 1.00372 0.88692 0.89826 0.89534 0.91188 0.91097 0.90554 0.91577 0.76688 0.89256 0.88932 0.88640 0.90392 0.84884 0.91318 0.90863 0.91482 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.16 10.24 36.00 0.37 -0.79 16 2 C 0.36 3.22 6.32 -29.03 -0.18 3.03 16 3 O -0.46 -5.87 16.92 6.00 0.10 -5.77 16 4 C -0.14 -1.16 2.45 -91.77 -0.22 -1.38 16 5 H 0.10 0.61 8.12 -51.93 -0.42 0.19 16 6 C -0.10 -1.00 5.19 -26.74 -0.14 -1.14 16 7 C -0.13 -1.55 5.49 -26.74 -0.15 -1.70 16 8 C 0.15 1.96 2.45 -67.93 -0.17 1.79 16 9 H 0.09 1.36 7.57 -51.93 -0.39 0.97 16 10 N -0.73 -11.70 5.03 -54.73 -0.28 -11.98 16 11 C 0.56 12.13 7.74 -12.31 -0.10 12.03 16 12 O -0.55 -13.50 15.99 5.32 0.09 -13.42 16 13 C -0.13 -3.00 5.87 -105.04 -0.62 -3.62 16 14 C -0.22 -4.50 9.55 -38.92 -0.37 -4.87 16 15 C -0.10 -2.08 10.01 -39.73 -0.40 -2.47 16 16 C -0.21 -5.01 9.78 -38.81 -0.38 -5.39 16 17 C 0.10 2.60 5.57 -106.87 -0.59 2.00 16 18 C -0.46 -12.08 9.05 -37.73 -0.34 -12.42 16 19 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 20 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 21 N -0.78 -20.74 10.97 55.55 0.61 -20.13 16 22 Si 0.91 18.80 29.59 -169.99 -5.03 13.77 16 23 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.26 -5.40 7.11 56.52 0.40 -4.99 16 26 C -0.09 -2.44 8.23 -38.44 -0.32 -2.76 16 27 C -0.12 -1.24 5.39 -26.73 -0.14 -1.38 16 28 C -0.10 -0.97 4.80 -26.73 -0.13 -1.10 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.09 0.35 8.12 -51.93 -0.42 -0.07 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 5.45 6.62 -40.82 -0.27 5.18 16 37 H 0.09 1.51 6.38 -52.49 -0.33 1.17 16 38 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 40 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 41 H 0.13 3.84 5.77 -52.49 -0.30 3.53 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.85 7.86 -51.93 -0.41 0.44 16 LS Contribution 369.14 15.07 5.56 5.56 Total: -1.00 -31.11 369.14 -9.67 -40.78 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -6.75 Total: 9.58 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -3.97 Total: -18.40 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.33 Total: -32.11 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.19 Total: -19.18 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.11 -9.67 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887262586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.676 kcal (2) G-P(sol) polarization free energy of solvation -31.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds