Wall clock time and date at job start Tue Mar 31 2020 10:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.20759 * 120.00189 * 2 1 4 4 C 1.50705 * 119.99985 * 179.97438 * 2 1 3 5 5 H 1.08995 * 109.46975 * 330.00279 * 4 2 1 6 6 C 1.52999 * 109.47194 * 89.99967 * 4 2 1 7 7 C 1.52992 * 109.47195 * 180.02562 * 6 4 2 8 8 C 1.53000 * 109.47115 * 299.99987 * 7 6 4 9 9 H 1.08998 * 109.47556 * 299.99609 * 8 7 6 10 10 N 1.46506 * 109.46951 * 180.02562 * 8 7 6 11 11 C 1.34774 * 120.00091 * 85.00143 * 10 8 7 12 12 O 1.21547 * 120.00154 * 359.97438 * 11 10 8 13 13 C 1.47887 * 120.00056 * 180.02562 * 11 10 8 14 14 C 1.39915 * 120.02538 * 0.28435 * 13 11 10 15 15 C 1.38329 * 120.35629 * 180.25949 * 14 13 11 16 16 C 1.37753 * 120.41353 * 359.45232 * 15 14 13 17 17 C 1.40746 * 120.03917 * 0.27401 * 16 15 14 18 18 C 1.41437 * 120.17736 * 179.97438 * 17 16 15 19 19 H 1.07996 * 119.99989 * 335.00001 * 18 17 16 20 20 C 1.39939 * 119.99721 * 155.00132 * 18 17 16 21 21 N 1.30824 * 120.00242 * 342.54013 * 20 18 17 22 22 Si 1.86803 * 119.99771 * 162.54476 * 20 18 17 23 23 H 1.48496 * 109.47144 * 59.99561 * 22 20 18 24 24 H 1.48503 * 109.47046 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46815 * 299.99367 * 22 20 18 26 26 C 1.38998 * 120.02345 * 180.02562 * 13 11 10 27 27 C 1.53003 * 109.47095 * 60.00303 * 8 7 6 28 28 C 1.52998 * 109.46645 * 299.99668 * 27 8 7 29 29 H 1.09000 * 109.46921 * 270.00152 * 1 2 3 30 30 H 1.09008 * 109.46786 * 30.00069 * 1 2 3 31 31 H 1.08997 * 109.47080 * 149.99972 * 1 2 3 32 32 H 1.09006 * 109.46989 * 300.00255 * 6 4 2 33 33 H 1.09003 * 109.46973 * 59.99993 * 6 4 2 34 34 H 1.09003 * 109.47088 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.47270 * 60.00047 * 7 6 4 36 36 H 0.96997 * 119.99633 * 264.99837 * 10 8 7 37 37 H 1.07999 * 119.81935 * 359.97438 * 14 13 11 38 38 H 1.08007 * 119.79199 * 179.72996 * 15 14 13 39 39 H 1.07998 * 119.97567 * 180.25533 * 16 15 14 40 40 H 0.96993 * 119.99950 * 180.02562 * 21 20 18 41 41 H 1.07995 * 120.20481 * 0.03961 * 26 13 11 42 42 H 1.08995 * 109.47192 * 59.99682 * 27 8 7 43 43 H 1.08998 * 109.46805 * 179.97438 * 27 8 7 44 44 H 1.09003 * 109.46842 * 180.02562 * 28 27 8 45 45 H 1.08995 * 109.47337 * 299.99925 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.6714 -2.0645 0.5147 6 6 2.5155 -1.7475 -1.4417 7 6 3.2799 -3.0728 -1.4411 8 6 4.6168 -2.8901 -0.7198 9 1 5.2063 -2.1310 -1.2338 10 7 5.3490 -4.1591 -0.7198 11 6 6.1131 -4.4962 -1.7775 12 8 6.1944 -3.7477 -2.7317 13 6 6.8518 -5.7773 -1.7777 14 6 6.7530 -6.6426 -0.6827 15 6 7.4452 -7.8402 -0.6733 16 6 8.2306 -8.2001 -1.7463 17 6 8.3377 -7.3452 -2.8592 18 6 9.1437 -7.7116 -3.9622 19 1 9.9680 -8.3958 -3.8251 20 6 8.8731 -7.1874 -5.2312 21 7 7.7080 -6.6475 -5.4811 22 14 10.1756 -7.2588 -6.5684 23 1 10.5350 -8.6749 -6.8342 24 1 9.6444 -6.6418 -7.8103 25 1 11.3826 -6.5169 -6.1237 26 6 7.6404 -6.1253 -2.8682 27 6 4.3618 -2.4478 0.7226 28 6 3.5974 -1.1225 0.7219 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8901 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.5630 -1.8780 -1.9555 33 1 3.1046 -0.9880 -1.9559 34 1 3.4620 -3.3876 -2.4687 35 1 2.6904 -3.8320 -0.9271 36 1 5.2838 -4.7565 0.0416 37 1 6.1367 -6.3719 0.1618 38 1 7.3659 -8.4993 0.1786 39 1 8.7647 -9.1387 -1.7333 40 1 7.5204 -6.2845 -6.3608 41 1 7.7168 -5.4621 -3.7171 42 1 3.7723 -3.2070 1.2366 43 1 5.3142 -2.3182 1.2366 44 1 3.4161 -0.8072 1.7495 45 1 4.1868 -0.3633 0.2079 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887262586.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:15 Heat of formation + Delta-G solvation = -101.810488 kcal Electronic energy + Delta-G solvation = -25571.419854 eV Core-core repulsion = 21937.396779 eV Total energy + Delta-G solvation = -3634.023076 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.38779 -40.66340 -39.10160 -38.27016 -35.67371 -35.13653 -32.47059 -31.91009 -31.40367 -31.21827 -29.66477 -27.19879 -25.10237 -23.80041 -23.36216 -22.76341 -21.39722 -21.02454 -20.23883 -19.44855 -18.03487 -17.32594 -17.05975 -16.80624 -16.52088 -16.28276 -15.97547 -15.79697 -15.49775 -15.08632 -14.96913 -14.73577 -14.50668 -14.27693 -14.17133 -13.52076 -13.44414 -13.28201 -13.19005 -12.95125 -12.92478 -12.80969 -12.60102 -12.51724 -12.26625 -12.19253 -12.15452 -11.88599 -11.52527 -11.50014 -11.31515 -11.07169 -10.78384 -10.39734 -10.07375 -9.46101 -9.37661 -8.66721 -6.38460 0.39231 1.00687 1.01608 1.35072 1.46935 1.49615 2.11142 2.18686 2.24397 2.79184 3.11560 3.61873 3.66065 3.71422 3.97280 4.01010 4.12920 4.18985 4.33887 4.36047 4.43507 4.45551 4.47676 4.60328 4.69198 4.71041 4.73010 4.83546 4.89535 5.01777 5.03468 5.08822 5.11254 5.14865 5.19850 5.26143 5.30115 5.32542 5.37323 5.51715 5.59116 5.87538 5.93254 6.05627 6.29440 6.52982 6.59811 6.72342 6.87816 6.95059 7.35622 8.29904 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.002682 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.868874 B =10436.949606 C =11294.694960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.361 3.639 3 O -0.506 6.506 4 C -0.134 4.134 5 H 0.136 0.864 6 C -0.097 4.097 7 C -0.122 4.122 8 C 0.140 3.860 9 H 0.049 0.951 10 N -0.708 5.708 11 C 0.560 3.440 12 O -0.591 6.591 13 C -0.139 4.139 14 C -0.194 4.194 15 C -0.096 4.096 16 C -0.217 4.217 17 C 0.065 3.935 18 C -0.499 4.499 19 H 0.084 0.916 20 C 0.029 3.971 21 N -0.826 5.826 22 Si 0.982 3.018 23 H -0.251 1.251 24 H -0.273 1.273 25 H -0.262 1.262 26 C -0.133 4.133 27 C -0.112 4.112 28 C -0.103 4.103 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.043 0.957 34 H 0.036 0.964 35 H 0.093 0.907 36 H 0.414 0.586 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.108 0.892 40 H 0.286 0.714 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.789 6.480 13.827 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.240 3.760 3 O -0.383 6.383 4 C -0.153 4.153 5 H 0.153 0.847 6 C -0.135 4.135 7 C -0.160 4.160 8 C 0.036 3.964 9 H 0.068 0.932 10 N -0.360 5.360 11 C 0.350 3.650 12 O -0.473 6.473 13 C -0.142 4.142 14 C -0.214 4.214 15 C -0.114 4.114 16 C -0.237 4.237 17 C 0.063 3.937 18 C -0.528 4.528 19 H 0.102 0.898 20 C -0.186 4.186 21 N -0.452 5.452 22 Si 0.802 3.198 23 H -0.175 1.175 24 H -0.197 1.197 25 H -0.186 1.186 26 C -0.153 4.153 27 C -0.150 4.150 28 C -0.141 4.141 29 H 0.135 0.865 30 H 0.097 0.903 31 H 0.128 0.872 32 H 0.111 0.889 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.112 0.888 36 H 0.252 0.748 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.126 0.874 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.120 0.880 43 H 0.092 0.908 44 H 0.103 0.897 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.582 7.667 12.989 20.979 hybrid contribution 0.823 -0.150 -1.040 1.335 sum -13.758 7.517 11.949 19.712 Atomic orbital electron populations 1.22356 0.91555 1.05760 1.06140 1.25220 0.93534 0.89449 0.67802 1.90410 1.73290 1.36733 1.37830 1.21892 0.97828 0.97700 0.97881 0.84666 1.21327 1.01146 0.96061 0.94987 1.21846 0.95654 0.98478 1.00066 1.21079 0.92239 0.84810 0.98319 0.93249 1.45804 1.47752 1.22447 1.19975 1.18762 0.78338 0.85828 0.82098 1.90673 1.66012 1.54018 1.36591 1.19807 1.01790 0.95162 0.97485 1.20875 1.06170 0.96358 0.98001 1.20947 0.96229 0.96490 0.97741 1.21419 1.05678 0.99746 0.96813 1.17957 0.91576 0.90623 0.93525 1.19834 1.13987 1.26150 0.92832 0.89798 1.26852 0.97262 0.92144 1.02347 1.69883 1.22062 1.29152 1.24071 0.85256 0.78303 0.80107 0.76120 1.17484 1.19733 1.18594 1.21439 0.99873 0.96937 0.97071 1.21735 1.01763 0.98221 0.93259 1.21365 0.94895 0.96598 1.01225 0.86529 0.90314 0.87212 0.88870 0.93860 0.94479 0.88814 0.74793 0.84215 0.84186 0.87375 0.90388 0.88607 0.88015 0.90829 0.89664 0.93503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.58 10.24 71.24 0.73 -0.85 16 2 C 0.36 5.72 6.32 29.10 0.18 5.90 16 3 O -0.51 -12.86 16.92 -1.45 -0.02 -12.89 16 4 C -0.13 -1.85 2.45 -11.54 -0.03 -1.88 16 5 H 0.14 0.92 8.12 -2.39 -0.02 0.90 16 6 C -0.10 -1.79 5.19 30.59 0.16 -1.63 16 7 C -0.12 -2.83 5.49 30.59 0.17 -2.67 16 8 C 0.14 3.66 2.45 44.99 0.11 3.77 16 9 H 0.05 1.67 7.57 -2.39 -0.02 1.65 16 10 N -0.71 -21.55 5.03 -445.36 -2.24 -23.79 16 11 C 0.56 24.60 7.74 86.80 0.67 25.27 16 12 O -0.59 -31.31 15.99 -3.86 -0.06 -31.38 16 13 C -0.14 -6.56 5.87 -20.13 -0.12 -6.68 16 14 C -0.19 -7.43 9.55 22.70 0.22 -7.21 16 15 C -0.10 -3.73 10.01 22.18 0.22 -3.51 16 16 C -0.22 -10.09 9.78 22.77 0.22 -9.87 16 17 C 0.07 3.58 5.57 -21.32 -0.12 3.46 16 18 C -0.50 -27.43 9.05 23.47 0.21 -27.22 16 19 H 0.08 4.34 7.90 -2.91 -0.02 4.31 16 20 C 0.03 1.52 5.14 85.26 0.44 1.96 16 21 N -0.83 -46.78 10.97 21.82 0.24 -46.54 16 22 Si 0.98 40.23 29.59 68.60 2.03 42.26 16 23 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 26 C -0.13 -7.44 8.23 23.01 0.19 -7.25 16 27 C -0.11 -1.90 5.39 30.59 0.17 -1.73 16 28 C -0.10 -1.73 4.80 30.59 0.15 -1.58 16 29 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.11 0.38 8.12 -2.39 -0.02 0.36 16 32 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.41 9.70 6.62 -92.71 -0.61 9.08 16 37 H 0.14 3.88 6.38 -2.91 -0.02 3.86 16 38 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 39 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 40 H 0.29 14.98 8.30 -92.71 -0.77 14.21 16 41 H 0.10 6.03 5.77 -2.91 -0.02 6.02 16 42 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.05 1.06 7.86 -2.39 -0.02 1.05 16 Total: -1.00 -76.79 369.14 3.90 -72.89 By element: Atomic # 1 Polarization: 30.76 SS G_CDS: 0.38 Total: 31.15 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 3.57 Total: -31.70 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -2.00 Total: -70.33 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -0.09 Total: -44.26 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -76.79 3.90 -72.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887262586.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.922 kcal (2) G-P(sol) polarization free energy of solvation -76.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds