Wall clock time and date at job start Tue Mar 31 2020 12:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 H 1.08995 * 109.47026 * 305.00506 * 10 9 7 12 12 N 1.46504 * 109.47049 * 65.00134 * 10 9 7 13 13 C 1.34778 * 120.00119 * 204.99869 * 12 10 9 14 14 O 1.21592 * 119.99602 * 0.02562 * 13 12 10 15 15 N 1.34775 * 120.00003 * 179.97438 * 13 12 10 16 16 C 1.47858 * 126.92937 * 359.69369 * 15 13 12 17 17 C 1.55993 * 105.12675 * 181.80480 * 16 15 13 18 18 H 1.09000 * 116.17957 * 159.06340 * 17 16 15 19 19 C 1.57093 * 99.46835 * 33.16226 * 17 16 15 20 20 C 1.49282 * 126.92450 * 179.97438 * 15 13 12 21 21 H 1.08995 * 116.12399 * 16.86791 * 20 15 13 22 22 C 1.56005 * 104.12845 * 246.89336 * 20 15 13 23 23 N 1.48279 * 105.07061 * 288.79880 * 22 20 15 24 24 C 1.50695 * 109.47170 * 184.99968 * 10 9 7 25 25 C 1.38244 * 119.99974 * 279.72675 * 24 10 9 26 26 C 1.38237 * 120.00008 * 179.78748 * 25 24 10 27 27 C 1.38232 * 119.99680 * 0.43924 * 26 25 24 28 28 C 1.38241 * 120.00546 * 359.81889 * 27 26 25 29 29 C 1.38234 * 120.00227 * 99.99761 * 24 10 9 30 30 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 32 32 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 33 33 H 0.97005 * 120.00236 * 24.99365 * 12 10 9 34 34 H 1.09009 * 110.31073 * 300.84211 * 16 15 13 35 35 H 1.09000 * 110.31466 * 63.01648 * 16 15 13 36 36 H 1.08996 * 112.36100 * 191.54799 * 19 17 16 37 37 H 1.08996 * 112.35745 * 64.13122 * 19 17 16 38 38 H 1.09005 * 110.32191 * 47.70213 * 22 20 15 39 39 H 1.09009 * 110.31969 * 169.90182 * 22 20 15 40 40 H 1.00906 * 111.00241 * 241.31315 * 23 22 20 41 41 H 1.08003 * 120.00027 * 0.02562 * 25 24 10 42 42 H 1.07995 * 120.00103 * 180.28021 * 26 25 24 43 43 H 1.07996 * 119.99733 * 179.83410 * 27 26 25 44 44 H 1.07993 * 120.00189 * 179.97438 * 28 27 26 45 45 H 1.07998 * 119.99921 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 1 2.9254 -3.5530 -0.8526 12 7 3.0118 -3.6573 1.2403 13 6 4.2367 -4.2181 1.2811 14 8 4.7056 -4.7276 0.2816 15 7 4.9422 -4.2131 2.4294 16 6 4.5267 -3.6340 3.7249 17 6 5.7354 -3.8693 4.6824 18 1 5.7857 -3.2257 5.5606 19 6 6.9122 -3.7400 3.6498 20 6 6.3031 -4.7862 2.6484 21 1 6.8854 -4.9963 1.7512 22 6 6.0620 -5.9768 3.6272 23 7 5.7310 -5.3459 4.9275 24 6 1.4952 -4.9633 -0.1319 25 6 0.9034 -5.5288 0.9821 26 6 0.2117 -6.7202 0.8677 27 6 0.1195 -7.3507 -0.3589 28 6 0.7159 -6.7881 -1.4720 29 6 1.4038 -5.5944 -1.3584 30 1 -0.4851 0.8401 0.0004 31 1 0.6283 -2.5592 0.8921 32 1 0.6202 -2.5546 -0.8878 33 1 2.6379 -3.2504 2.0376 34 1 4.3294 -2.5674 3.6166 35 1 3.6420 -4.1468 4.1023 36 1 7.8653 -4.0687 4.0639 37 1 6.9769 -2.7413 3.2179 38 1 5.2295 -6.5892 3.2806 39 1 6.9650 -6.5807 3.7183 40 1 6.4063 -5.5974 5.6339 41 1 0.9781 -5.0377 1.9412 42 1 -0.2545 -7.1596 1.7371 43 1 -0.4186 -8.2829 -0.4478 44 1 0.6442 -7.2810 -2.4302 45 1 1.8695 -5.1547 -2.2280 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891704395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:52 Heat of formation + Delta-G solvation = 28.421443 kcal Electronic energy + Delta-G solvation = -26839.386327 eV Core-core repulsion = 23243.303283 eV Total energy + Delta-G solvation = -3596.083044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.82802 -39.23488 -38.04411 -35.08128 -33.40773 -32.61988 -30.90571 -30.38144 -29.77636 -29.11249 -28.45028 -25.34633 -24.63336 -22.23826 -21.95163 -21.55772 -20.82336 -19.80740 -18.98804 -18.07691 -16.86542 -16.27444 -16.14398 -16.00051 -15.31484 -14.90972 -14.72852 -14.53275 -14.22849 -13.82460 -13.34562 -13.05970 -12.91643 -12.75889 -12.49300 -12.45757 -12.24963 -12.07303 -11.91224 -11.64923 -11.54379 -11.42925 -11.29028 -11.08758 -10.88424 -10.69499 -10.58358 -10.40804 -9.73941 -9.62810 -9.26636 -8.81735 -8.54562 -8.46494 -8.42643 -8.15840 -8.07062 -6.07065 -4.10009 1.84750 1.87487 2.91141 3.27778 3.34688 3.37584 3.67454 3.81937 4.23108 4.33298 4.39718 4.41868 4.62204 4.68690 4.84046 5.19709 5.28833 5.30475 5.32593 5.34231 5.43371 5.44088 5.58798 5.60910 5.66129 5.76154 5.78661 5.92933 5.98032 6.00857 6.18006 6.31385 6.40966 6.43260 6.51371 6.64690 6.91442 6.91953 7.02798 7.08136 7.19098 7.45876 7.47753 7.56943 7.72000 7.90200 8.28817 8.53496 8.95843 9.15168 9.54566 11.03538 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.008163 B = 0.005899 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3429.316982 B = 4745.797734 C = 7370.778829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.024 3.976 10 C 0.202 3.798 11 H 0.085 0.915 12 N -0.713 5.713 13 C 0.725 3.275 14 O -0.598 6.598 15 N -0.640 5.640 16 C 0.110 3.890 17 C 0.055 3.945 18 H 0.128 0.872 19 C -0.175 4.175 20 C 0.134 3.866 21 H 0.124 0.876 22 C 0.031 3.969 23 N -0.668 5.668 24 C -0.071 4.071 25 C -0.105 4.105 26 C -0.125 4.125 27 C -0.136 4.136 28 C -0.123 4.123 29 C -0.108 4.108 30 H 0.261 0.739 31 H 0.024 0.976 32 H 0.035 0.965 33 H 0.396 0.604 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.334 0.666 41 H 0.115 0.885 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.976 -11.122 9.302 17.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.013 4.013 10 C 0.097 3.903 11 H 0.104 0.896 12 N -0.364 5.364 13 C 0.427 3.573 14 O -0.477 6.477 15 N -0.380 5.380 16 C -0.014 4.014 17 C -0.054 4.054 18 H 0.146 0.854 19 C -0.215 4.215 20 C 0.029 3.971 21 H 0.142 0.858 22 C -0.099 4.099 23 N -0.296 5.296 24 C -0.072 4.072 25 C -0.123 4.123 26 C -0.143 4.143 27 C -0.154 4.154 28 C -0.142 4.142 29 C -0.126 4.126 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.230 0.770 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.150 0.850 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.316 -11.476 8.429 16.490 hybrid contribution 1.121 1.370 0.304 1.796 sum 9.437 -10.106 8.733 16.354 Atomic orbital electron populations 1.69962 1.05981 1.26730 1.50444 1.24980 0.94785 0.99152 0.95231 0.86601 0.79749 0.83485 0.78205 1.20648 1.21266 1.19998 1.21131 0.93057 0.90379 1.50985 0.92461 1.19394 0.93216 0.90190 0.98541 1.20119 0.92767 0.91706 0.85699 0.89649 1.45124 1.15890 1.60846 1.14574 1.15495 0.80936 0.79183 0.81665 1.90867 1.71035 1.52672 1.33154 1.48216 1.18186 1.62467 1.09123 1.22425 0.97472 0.98518 0.82974 1.24424 0.94101 0.89932 0.96991 0.85398 1.24589 0.98177 1.00869 0.97868 1.23802 0.83441 0.92500 0.97353 0.85839 1.23561 1.00697 0.96576 0.89111 1.63188 1.52841 1.05923 1.07632 1.20606 0.96646 0.96678 0.93269 1.20885 0.97488 0.95546 0.98417 1.21028 0.99939 0.96077 0.97305 1.20977 1.01182 1.00002 0.93224 1.21027 0.98687 0.96220 0.98226 1.21009 0.99085 0.95096 0.97443 0.92906 0.95797 0.94662 0.76978 0.90996 0.90635 0.90013 0.89534 0.89808 0.92051 0.85019 0.86745 0.86830 0.86921 0.86675 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.52 -13.88 8.84 -34.44 -0.30 -14.18 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.59 4.50 -27.88 -0.13 0.46 16 10 C 0.20 4.30 2.12 -69.08 -0.15 4.15 16 11 H 0.09 2.00 7.44 -51.93 -0.39 1.61 16 12 N -0.71 -13.77 3.99 -59.81 -0.24 -14.01 16 13 C 0.72 14.07 8.50 -86.92 -0.74 13.33 16 14 O -0.60 -13.64 16.35 5.28 0.09 -13.55 16 15 N -0.64 -9.74 2.95 -162.44 -0.48 -10.22 16 16 C 0.11 1.35 5.69 -1.70 -0.01 1.34 16 17 C 0.06 0.51 5.78 -62.34 -0.36 0.15 16 18 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 19 C -0.18 -1.66 6.80 -22.28 -0.15 -1.82 16 20 C 0.13 1.66 5.23 -62.55 -0.33 1.33 16 21 H 0.12 1.62 8.06 -51.93 -0.42 1.20 16 22 C 0.03 0.33 6.97 -1.45 -0.01 0.32 16 23 N -0.67 -6.30 7.18 -98.04 -0.70 -7.00 16 24 C -0.07 -1.38 4.91 -104.62 -0.51 -1.89 16 25 C -0.11 -1.87 9.33 -39.58 -0.37 -2.24 16 26 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 27 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16 28 C -0.12 -1.95 10.05 -39.58 -0.40 -2.35 16 29 C -0.11 -1.97 9.67 -39.58 -0.38 -2.35 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.40 7.20 7.68 -40.82 -0.31 6.88 16 34 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.33 2.40 8.93 -39.29 -0.35 2.05 16 41 H 0.11 1.95 7.71 -52.48 -0.40 1.55 16 42 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 43 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 44 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.12 2.09 8.04 -52.49 -0.42 1.67 16 LS Contribution 369.90 15.07 5.57 5.57 Total: -1.00 -32.35 369.90 -11.69 -44.03 By element: Atomic # 1 Polarization: 17.90 SS G_CDS: -6.91 Total: 10.99 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -4.73 Total: -6.97 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: -0.68 Total: -56.23 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: 0.09 Total: -13.55 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.35 -11.69 -44.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891704395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.455 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds