Wall clock time and date at job start Tue Mar 31 2020 12:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 H 1.08995 * 109.47026 * 305.00506 * 10 9 7 12 12 N 1.46504 * 109.47049 * 65.00134 * 10 9 7 13 13 C 1.34778 * 120.00119 * 204.99869 * 12 10 9 14 14 O 1.21592 * 119.99602 * 0.02562 * 13 12 10 15 15 N 1.34775 * 120.00003 * 179.97438 * 13 12 10 16 16 C 1.47858 * 126.92937 * 359.69369 * 15 13 12 17 17 C 1.55993 * 105.12675 * 181.80480 * 16 15 13 18 18 H 1.09000 * 116.17957 * 159.06340 * 17 16 15 19 19 C 1.57093 * 99.46835 * 33.16226 * 17 16 15 20 20 C 1.49282 * 126.92450 * 179.97438 * 15 13 12 21 21 H 1.08995 * 116.12399 * 16.86791 * 20 15 13 22 22 C 1.56005 * 104.12845 * 246.89336 * 20 15 13 23 23 N 1.48279 * 105.07061 * 288.79880 * 22 20 15 24 24 C 1.50695 * 109.47170 * 184.99968 * 10 9 7 25 25 C 1.38244 * 119.99974 * 279.72675 * 24 10 9 26 26 C 1.38237 * 120.00008 * 179.78748 * 25 24 10 27 27 C 1.38232 * 119.99680 * 0.43924 * 26 25 24 28 28 C 1.38241 * 120.00546 * 359.81889 * 27 26 25 29 29 C 1.38234 * 120.00227 * 99.99761 * 24 10 9 30 30 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 32 32 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 33 33 H 0.97005 * 120.00236 * 24.99365 * 12 10 9 34 34 H 1.09009 * 110.31073 * 300.84211 * 16 15 13 35 35 H 1.09000 * 110.31466 * 63.01648 * 16 15 13 36 36 H 1.08996 * 112.36100 * 191.54799 * 19 17 16 37 37 H 1.08996 * 112.35745 * 64.13122 * 19 17 16 38 38 H 1.09005 * 110.32191 * 47.70213 * 22 20 15 39 39 H 1.09009 * 110.31969 * 169.90182 * 22 20 15 40 40 H 1.00906 * 111.00241 * 241.31315 * 23 22 20 41 41 H 1.08003 * 120.00027 * 0.02562 * 25 24 10 42 42 H 1.07995 * 120.00103 * 180.28021 * 26 25 24 43 43 H 1.07996 * 119.99733 * 179.83410 * 27 26 25 44 44 H 1.07993 * 120.00189 * 179.97438 * 28 27 26 45 45 H 1.07998 * 119.99921 * 359.97438 * 29 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 1 2.9254 -3.5530 -0.8526 12 7 3.0118 -3.6573 1.2403 13 6 4.2367 -4.2181 1.2811 14 8 4.7056 -4.7276 0.2816 15 7 4.9422 -4.2131 2.4294 16 6 4.5267 -3.6340 3.7249 17 6 5.7354 -3.8693 4.6824 18 1 5.7857 -3.2257 5.5606 19 6 6.9122 -3.7400 3.6498 20 6 6.3031 -4.7862 2.6484 21 1 6.8854 -4.9963 1.7512 22 6 6.0620 -5.9768 3.6272 23 7 5.7310 -5.3459 4.9275 24 6 1.4952 -4.9633 -0.1319 25 6 0.9034 -5.5288 0.9821 26 6 0.2117 -6.7202 0.8677 27 6 0.1195 -7.3507 -0.3589 28 6 0.7159 -6.7881 -1.4720 29 6 1.4038 -5.5944 -1.3584 30 1 -0.4851 0.8401 0.0004 31 1 0.6283 -2.5592 0.8921 32 1 0.6202 -2.5546 -0.8878 33 1 2.6379 -3.2504 2.0376 34 1 4.3294 -2.5674 3.6166 35 1 3.6420 -4.1468 4.1023 36 1 7.8653 -4.0687 4.0639 37 1 6.9769 -2.7413 3.2179 38 1 5.2295 -6.5892 3.2806 39 1 6.9650 -6.5807 3.7183 40 1 6.4063 -5.5974 5.6339 41 1 0.9781 -5.0377 1.9412 42 1 -0.2545 -7.1596 1.7371 43 1 -0.4186 -8.2829 -0.4478 44 1 0.6442 -7.2810 -2.4302 45 1 1.8695 -5.1547 -2.2280 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891704395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:15:52 Heat of formation + Delta-G solvation = 7.450736 kcal Electronic energy + Delta-G solvation = -26840.295685 eV Core-core repulsion = 23243.303283 eV Total energy + Delta-G solvation = -3596.992402 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.92559 -40.60407 -39.41847 -36.77061 -34.84816 -34.41684 -32.29580 -31.69446 -30.69594 -30.59458 -29.75627 -26.83291 -26.01891 -23.82276 -23.44418 -22.73629 -21.73474 -21.29559 -20.26521 -19.28953 -18.63495 -17.76545 -17.32459 -17.27572 -16.71518 -16.43240 -16.13404 -15.99732 -15.50988 -15.09392 -14.85829 -14.52396 -14.20801 -14.10434 -13.91292 -13.67916 -13.56340 -13.43292 -13.16288 -12.92535 -12.84849 -12.64873 -12.51111 -12.44952 -12.37732 -12.18642 -12.14880 -11.89053 -11.60193 -11.34738 -11.23960 -10.60474 -10.11461 -9.76974 -9.61583 -9.53314 -9.36084 -8.21313 -6.31734 0.50135 0.54983 1.37588 1.39221 1.49471 1.62346 2.19659 2.38666 2.89311 3.00911 3.10564 3.19149 3.49637 3.53462 3.84161 3.98423 3.99723 4.02303 4.19495 4.30551 4.34610 4.42095 4.46184 4.56659 4.63371 4.70815 4.74653 4.77525 4.82514 4.86473 4.91157 5.03545 5.11555 5.18387 5.24907 5.27999 5.40929 5.59548 5.60151 5.61168 5.63129 5.76159 5.90855 6.13098 6.15176 6.19984 6.51593 6.79864 7.05454 7.36894 7.62792 8.89518 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.008163 B = 0.005899 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3429.316982 B = 4745.797734 C = 7370.778829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.278 1.278 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.528 4.528 8 H 0.049 0.951 9 C 0.040 3.960 10 C 0.219 3.781 11 H 0.054 0.946 12 N -0.709 5.709 13 C 0.718 3.282 14 O -0.640 6.640 15 N -0.639 5.639 16 C 0.099 3.901 17 C 0.073 3.927 18 H 0.163 0.837 19 C -0.160 4.160 20 C 0.113 3.887 21 H 0.109 0.891 22 C 0.042 3.958 23 N -0.671 5.671 24 C -0.099 4.099 25 C -0.120 4.120 26 C -0.125 4.125 27 C -0.128 4.128 28 C -0.122 4.122 29 C -0.133 4.133 30 H 0.265 0.735 31 H 0.010 0.990 32 H 0.006 0.994 33 H 0.400 0.600 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.090 0.910 40 H 0.354 0.646 41 H 0.113 0.887 42 H 0.145 0.855 43 H 0.153 0.847 44 H 0.146 0.854 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.900 -12.034 11.479 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.783 3.217 4 H -0.204 1.204 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.566 4.566 8 H 0.067 0.933 9 C 0.003 3.997 10 C 0.113 3.887 11 H 0.072 0.928 12 N -0.361 5.361 13 C 0.421 3.579 14 O -0.523 6.523 15 N -0.378 5.378 16 C -0.023 4.023 17 C -0.036 4.036 18 H 0.181 0.819 19 C -0.199 4.199 20 C 0.009 3.991 21 H 0.127 0.873 22 C -0.089 4.089 23 N -0.302 5.302 24 C -0.100 4.100 25 C -0.138 4.138 26 C -0.143 4.143 27 C -0.146 4.146 28 C -0.140 4.140 29 C -0.151 4.151 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.024 0.976 33 H 0.235 0.765 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.172 0.828 41 H 0.131 0.869 42 H 0.163 0.837 43 H 0.171 0.829 44 H 0.163 0.837 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.271 -12.393 10.671 18.800 hybrid contribution 0.810 1.571 -0.372 1.807 sum 10.081 -10.822 10.299 18.022 Atomic orbital electron populations 1.70073 1.07438 1.27778 1.51193 1.25777 0.95600 1.02631 0.94695 0.85557 0.78684 0.79176 0.78263 1.20412 1.20312 1.19236 1.21339 0.92772 0.91617 1.50914 0.93264 1.19117 0.93176 0.91121 0.96332 1.19595 0.91564 0.92001 0.85560 0.92771 1.44925 1.16150 1.61161 1.13911 1.15645 0.80846 0.78985 0.82470 1.90817 1.71875 1.54464 1.35152 1.48302 1.18943 1.61772 1.08756 1.22676 0.99236 0.98048 0.82383 1.24518 0.91652 0.90238 0.97214 0.81936 1.24546 0.99516 0.99263 0.96625 1.24126 0.82152 0.94747 0.98039 0.87323 1.23360 1.00711 0.95748 0.89079 1.63050 1.53855 1.05942 1.07310 1.20500 0.98253 0.96461 0.94775 1.20999 0.98263 0.96799 0.97775 1.21419 0.98869 0.94955 0.99022 1.21465 0.99974 1.00912 0.92262 1.21392 0.97434 0.95016 1.00181 1.21172 1.00434 0.96678 0.96854 0.92649 0.97161 0.97580 0.76500 0.91307 0.91137 0.86833 0.90553 0.92855 0.89226 0.82815 0.86850 0.83704 0.82932 0.83657 0.86942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.68 13.29 21.45 0.28 -54.40 16 2 C 0.01 0.66 5.46 84.65 0.46 1.12 16 3 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.53 -29.61 8.84 25.60 0.23 -29.38 16 8 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 9 C 0.04 2.10 4.50 29.85 0.13 2.23 16 10 C 0.22 10.05 2.12 44.24 0.09 10.14 16 11 H 0.05 2.78 7.44 -2.39 -0.02 2.76 16 12 N -0.71 -29.27 3.99 -461.41 -1.84 -31.11 16 13 C 0.72 29.52 8.50 179.05 1.52 31.04 16 14 O -0.64 -31.13 16.35 -4.01 -0.07 -31.19 16 15 N -0.64 -19.97 2.95 -786.10 -2.32 -22.29 16 16 C 0.10 2.40 5.69 87.16 0.50 2.90 16 17 C 0.07 1.13 5.78 46.85 0.27 1.40 16 18 H 0.16 1.50 8.14 -2.39 -0.02 1.48 16 19 C -0.16 -2.64 6.80 33.48 0.23 -2.41 16 20 C 0.11 2.76 5.23 46.94 0.25 3.01 16 21 H 0.11 2.94 8.06 -2.39 -0.02 2.92 16 22 C 0.04 0.83 6.97 87.08 0.61 1.43 16 23 N -0.67 -10.75 7.18 -464.09 -3.33 -14.08 16 24 C -0.10 -4.07 4.91 -19.87 -0.10 -4.16 16 25 C -0.12 -4.38 9.33 22.27 0.21 -4.17 16 26 C -0.12 -3.72 10.05 22.27 0.22 -3.50 16 27 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 28 C -0.12 -3.73 10.05 22.27 0.22 -3.51 16 29 C -0.13 -5.06 9.67 22.27 0.22 -4.84 16 30 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.40 15.47 7.68 -92.70 -0.71 14.76 16 34 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.35 3.63 8.93 -89.69 -0.80 2.83 16 41 H 0.11 4.02 7.71 -2.91 -0.02 3.99 16 42 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 43 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 44 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 45 H 0.11 4.27 8.04 -2.91 -0.02 4.24 16 Total: -1.00 -74.25 369.90 -0.47 -74.72 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -0.51 Total: 34.30 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 5.28 Total: -1.99 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -7.20 Total: -121.87 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.07 Total: -31.19 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -74.25 -0.47 -74.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891704395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.174 kcal (2) G-P(sol) polarization free energy of solvation -74.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds