Wall clock time and date at job start Tue Mar 31 2020 12:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86804 * 120.00139 * 2 1 4 4 H 1.48498 * 109.46898 * 270.00286 * 3 2 1 5 5 H 1.48496 * 109.47100 * 30.00168 * 3 2 1 6 6 H 1.48495 * 109.46732 * 150.00143 * 3 2 1 7 7 C 1.39943 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00588 * 190.05714 * 7 2 1 9 9 C 1.41399 * 119.99741 * 10.06430 * 7 2 1 10 10 C 1.40714 * 120.24499 * 209.10025 * 9 7 2 11 11 C 1.37618 * 119.74761 * 180.29667 * 10 9 7 12 12 C 1.38640 * 120.24774 * 359.42819 * 11 10 9 13 13 C 1.50690 * 119.75188 * 180.30540 * 12 11 10 14 14 N 1.46504 * 109.46845 * 270.29446 * 13 12 11 15 15 C 1.34785 * 120.00142 * 179.97438 * 14 13 12 16 16 O 1.21581 * 119.99583 * 5.09366 * 15 14 13 17 17 N 1.34774 * 119.99942 * 185.09282 * 15 14 13 18 18 C 1.47154 * 120.68032 * 174.56955 * 17 15 14 19 19 C 1.54322 * 107.81417 * 132.56230 * 18 17 15 20 20 H 1.09002 * 112.56329 * 182.48063 * 19 18 17 21 21 C 1.54549 * 107.96379 * 306.88088 * 19 18 17 22 22 C 1.54259 * 104.93703 * 88.91058 * 21 19 18 23 23 C 1.54546 * 104.93968 * 0.02562 * 22 21 19 24 24 H 1.09001 * 112.70840 * 146.74635 * 23 22 21 25 25 C 1.47153 * 120.68368 * 354.84888 * 17 15 14 26 26 N 1.48727 * 107.07308 * 58.69490 * 19 18 17 27 27 C 1.38637 * 120.49562 * 0.59828 * 12 11 10 28 28 C 1.37621 * 120.25079 * 359.68151 * 27 12 11 29 29 H 0.97004 * 119.99783 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.12734 * 0.02562 * 10 9 7 31 31 H 1.07998 * 119.87677 * 179.72553 * 11 10 9 32 32 H 1.09000 * 109.47245 * 30.29234 * 13 12 11 33 33 H 1.08993 * 109.47801 * 150.29658 * 13 12 11 34 34 H 0.96999 * 119.99794 * 0.02562 * 14 13 12 35 35 H 1.08999 * 109.74650 * 252.27000 * 18 17 15 36 36 H 1.08994 * 109.74577 * 12.99486 * 18 17 15 37 37 H 1.08997 * 110.34430 * 207.77755 * 21 19 18 38 38 H 1.08997 * 110.34841 * 329.93978 * 21 19 18 39 39 H 1.08993 * 110.34933 * 241.13439 * 22 21 19 40 40 H 1.09003 * 110.33977 * 118.86707 * 22 21 19 41 41 H 1.08997 * 109.74899 * 347.00397 * 25 17 15 42 42 H 1.09004 * 109.74699 * 107.73061 * 25 17 15 43 43 H 1.00907 * 110.99557 * 45.86571 * 26 19 18 44 44 H 1.08004 * 119.87009 * 179.69977 * 27 12 11 45 45 H 1.08001 * 120.12160 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0755 -1.2193 0.1628 9 6 1.3172 -2.4269 -0.2151 10 6 1.7942 -3.6231 0.3520 11 6 1.1173 -4.8009 0.1315 12 6 -0.0371 -4.8097 -0.6362 13 6 -0.7732 -6.1045 -0.8647 14 7 -0.2515 -6.7570 -2.0682 15 6 -0.7629 -7.9374 -2.4704 16 8 -1.7179 -8.4156 -1.8895 17 7 -0.2156 -8.5876 -3.5164 18 6 -0.6839 -9.9305 -3.8942 19 6 -0.9127 -9.9387 -5.4204 20 1 -1.3043 -10.8905 -5.7795 21 6 -1.8435 -8.7552 -5.7692 22 6 -0.8960 -7.5630 -6.0144 23 6 0.5243 -8.1307 -5.7929 24 1 1.2693 -7.6638 -6.4372 25 6 0.8667 -7.9717 -4.3005 26 7 0.3840 -9.5872 -6.0582 27 6 -0.5159 -3.6373 -1.2002 28 6 0.1480 -2.4489 -0.9976 29 1 -0.4850 0.8401 0.0004 30 1 2.6907 -3.6177 0.9544 31 1 1.4841 -5.7209 0.5621 32 1 -0.6310 -6.7599 -0.0055 33 1 -1.8361 -5.9004 -0.9939 34 1 0.4625 -6.3398 -2.5752 35 1 0.0694 -10.6717 -3.6277 36 1 -1.6186 -10.1528 -3.3795 37 1 -2.4159 -8.9761 -6.6701 38 1 -2.5148 -8.5430 -4.9371 39 1 -1.1003 -6.7637 -5.3021 40 1 -1.0028 -7.1979 -7.0359 41 1 0.9457 -6.9135 -4.0514 42 1 1.8099 -8.4732 -4.0836 43 1 1.1436 -10.1053 -5.6425 44 1 -1.4136 -3.6566 -1.8005 45 1 -0.2267 -1.5368 -1.4383 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892200159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:52 Heat of formation + Delta-G solvation = 3.270268 kcal Electronic energy + Delta-G solvation = -26116.078955 eV Core-core repulsion = 22518.905274 eV Total energy + Delta-G solvation = -3597.173681 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.11516 -38.87908 -37.67777 -34.79535 -34.12561 -33.36957 -31.75957 -30.65921 -30.20106 -29.39332 -27.14928 -25.69962 -24.85872 -23.50848 -21.11167 -21.00141 -20.68625 -20.14074 -19.47868 -18.38398 -17.39786 -16.50897 -16.11057 -15.91473 -15.40254 -14.76233 -14.48707 -14.19208 -14.05124 -13.95159 -13.76531 -13.43335 -13.37329 -12.90933 -12.85830 -12.55082 -12.30918 -12.06838 -11.94230 -11.67996 -11.58414 -11.43733 -11.21267 -11.15411 -11.08883 -10.63812 -10.59807 -10.54473 -10.01376 -9.72472 -9.48751 -9.31198 -9.30602 -8.75213 -8.27302 -7.60168 -7.43103 -6.81524 -4.50321 2.42633 2.80881 2.94716 3.01835 3.04723 3.11623 3.35539 3.82575 3.85889 4.13902 4.37587 4.47760 4.58104 4.61089 4.67925 4.83371 5.09417 5.21266 5.37363 5.40088 5.51499 5.56402 5.57916 5.62632 5.75349 5.80349 5.91036 5.91411 5.96682 6.20472 6.24780 6.33240 6.37799 6.44939 6.83450 6.84459 6.94496 6.98143 7.02150 7.15422 7.24997 7.49538 7.69530 7.94190 7.97826 8.15248 8.18451 8.52728 8.77084 8.78169 8.84037 10.11890 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023085 B = 0.002721 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.601131 B =10287.034901 C =10732.227579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.073 3.927 3 Si 0.913 3.087 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.078 0.922 9 C 0.116 3.884 10 C -0.225 4.225 11 C -0.073 4.073 12 C -0.239 4.239 13 C 0.201 3.799 14 N -0.734 5.734 15 C 0.704 3.296 16 O -0.597 6.597 17 N -0.631 5.631 18 C 0.100 3.900 19 C 0.051 3.949 20 H 0.108 0.892 21 C -0.113 4.113 22 C -0.113 4.113 23 C 0.053 3.947 24 H 0.110 0.890 25 C 0.079 3.921 26 N -0.657 5.657 27 C -0.084 4.084 28 C -0.161 4.161 29 H 0.281 0.719 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.394 0.606 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.337 0.663 44 H 0.088 0.912 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.784 -13.231 -11.047 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.490 4.490 8 H 0.096 0.904 9 C 0.113 3.887 10 C -0.244 4.244 11 C -0.092 4.092 12 C -0.241 4.241 13 C 0.079 3.921 14 N -0.390 5.390 15 C 0.406 3.594 16 O -0.476 6.476 17 N -0.370 5.370 18 C -0.025 4.025 19 C -0.060 4.060 20 H 0.126 0.874 21 C -0.151 4.151 22 C -0.151 4.151 23 C -0.058 4.058 24 H 0.128 0.872 25 C -0.046 4.046 26 N -0.286 5.286 27 C -0.103 4.103 28 C -0.181 4.181 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.231 0.769 35 H 0.080 0.920 36 H 0.116 0.884 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.153 0.847 44 H 0.106 0.894 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.350 -13.371 -11.272 17.492 hybrid contribution 0.989 1.095 0.918 1.738 sum 0.638 -12.276 -10.354 16.072 Atomic orbital electron populations 1.69783 1.07468 1.29246 1.35743 1.25927 0.94871 1.01364 0.92315 0.86235 0.80343 0.80406 0.79295 1.19280 1.20222 1.18628 1.19643 0.95843 0.90490 1.43015 0.90398 1.17693 0.91329 0.92061 0.87577 1.21032 1.03094 0.93472 1.06816 1.20418 0.94656 0.96417 0.97708 1.19032 1.00980 0.93061 1.10987 1.19821 0.96508 0.91090 0.84695 1.45878 1.41441 1.21138 1.30508 1.15963 0.82282 0.81128 0.80045 1.90876 1.28978 1.69025 1.58753 1.47242 1.39433 1.18356 1.32010 1.22360 1.01494 0.82710 0.95938 1.23350 0.91337 0.99775 0.91502 0.87407 1.22246 0.97428 0.93866 1.01592 1.22246 0.93149 0.97876 1.01878 1.23252 0.98694 0.90158 0.93677 0.87199 1.22539 0.90045 0.99493 0.92546 1.63864 1.04121 1.03664 1.56932 1.20595 0.98070 0.92851 0.98760 1.21382 0.98618 0.96454 1.01601 0.90786 0.88852 0.89401 0.92697 0.92442 0.76941 0.91971 0.88404 0.91359 0.91007 0.91223 0.91162 0.89503 0.91390 0.84673 0.89358 0.86143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.00 10.83 55.55 0.60 -19.40 16 2 C 0.07 1.76 5.26 -17.34 -0.09 1.67 16 3 Si 0.91 18.09 29.57 -169.99 -5.03 13.07 16 4 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.46 -11.71 9.06 -37.74 -0.34 -12.06 16 8 H 0.08 1.90 7.87 -52.49 -0.41 1.49 16 9 C 0.12 2.94 5.55 -106.82 -0.59 2.35 16 10 C -0.22 -5.22 9.80 -38.87 -0.38 -5.60 16 11 C -0.07 -1.54 9.67 -39.66 -0.38 -1.92 16 12 C -0.24 -4.88 5.27 -104.33 -0.55 -5.43 16 13 C 0.20 3.67 5.79 -5.20 -0.03 3.64 16 14 N -0.73 -11.71 5.45 -66.42 -0.36 -12.07 16 15 C 0.70 11.37 8.30 -86.91 -0.72 10.64 16 16 O -0.60 -11.78 15.81 5.29 0.08 -11.70 16 17 N -0.63 -7.69 2.24 -176.96 -0.40 -8.08 16 18 C 0.10 1.05 5.75 -2.99 -0.02 1.03 16 19 C 0.05 0.45 4.60 -65.19 -0.30 0.15 16 20 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 21 C -0.11 -1.12 6.18 -25.26 -0.16 -1.28 16 22 C -0.11 -1.12 6.17 -25.26 -0.16 -1.27 16 23 C 0.05 0.46 4.59 -65.41 -0.30 0.16 16 24 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 25 C 0.08 0.76 5.59 -3.19 -0.02 0.74 16 26 N -0.66 -5.54 7.39 -94.28 -0.70 -6.23 16 27 C -0.08 -1.84 9.67 -39.66 -0.38 -2.22 16 28 C -0.16 -3.97 8.66 -38.87 -0.34 -4.31 16 29 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 30 H 0.09 2.06 8.06 -52.48 -0.42 1.63 16 31 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 33 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 34 H 0.39 5.76 6.03 -40.82 -0.25 5.52 16 35 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 36 H 0.10 1.20 7.07 -51.93 -0.37 0.83 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.85 7.85 -51.93 -0.41 0.45 16 39 H 0.07 0.79 7.84 -51.93 -0.41 0.39 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.87 5.84 -51.93 -0.30 0.56 16 42 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 43 H 0.34 2.47 8.34 -39.29 -0.33 2.14 16 44 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 45 H 0.12 3.10 6.23 -52.49 -0.33 2.77 16 LS Contribution 357.05 15.07 5.38 5.38 Total: -1.00 -28.32 357.05 -11.75 -40.07 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -6.58 Total: 12.69 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -4.76 Total: -13.72 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -0.85 Total: -45.79 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.08 Total: -11.70 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.32 -11.75 -40.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892200159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.342 kcal (2) G-P(sol) polarization free energy of solvation -28.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds