Wall clock time and date at job start Tue Mar 31 2020 12:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86804 * 120.00139 * 2 1 4 4 H 1.48498 * 109.46898 * 270.00286 * 3 2 1 5 5 H 1.48496 * 109.47100 * 30.00168 * 3 2 1 6 6 H 1.48495 * 109.46732 * 150.00143 * 3 2 1 7 7 C 1.39943 * 120.00040 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00588 * 190.05714 * 7 2 1 9 9 C 1.41399 * 119.99741 * 10.06430 * 7 2 1 10 10 C 1.40714 * 120.24499 * 209.10025 * 9 7 2 11 11 C 1.37618 * 119.74761 * 180.29667 * 10 9 7 12 12 C 1.38640 * 120.24774 * 359.42819 * 11 10 9 13 13 C 1.50690 * 119.75188 * 180.30540 * 12 11 10 14 14 N 1.46504 * 109.46845 * 270.29446 * 13 12 11 15 15 C 1.34785 * 120.00142 * 179.97438 * 14 13 12 16 16 O 1.21581 * 119.99583 * 5.09366 * 15 14 13 17 17 N 1.34774 * 119.99942 * 185.09282 * 15 14 13 18 18 C 1.47154 * 120.68032 * 174.56955 * 17 15 14 19 19 C 1.54322 * 107.81417 * 132.56230 * 18 17 15 20 20 H 1.09002 * 112.56329 * 182.48063 * 19 18 17 21 21 C 1.54549 * 107.96379 * 306.88088 * 19 18 17 22 22 C 1.54259 * 104.93703 * 88.91058 * 21 19 18 23 23 C 1.54546 * 104.93968 * 0.02562 * 22 21 19 24 24 H 1.09001 * 112.70840 * 146.74635 * 23 22 21 25 25 C 1.47153 * 120.68368 * 354.84888 * 17 15 14 26 26 N 1.48727 * 107.07308 * 58.69490 * 19 18 17 27 27 C 1.38637 * 120.49562 * 0.59828 * 12 11 10 28 28 C 1.37621 * 120.25079 * 359.68151 * 27 12 11 29 29 H 0.97004 * 119.99783 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.12734 * 0.02562 * 10 9 7 31 31 H 1.07998 * 119.87677 * 179.72553 * 11 10 9 32 32 H 1.09000 * 109.47245 * 30.29234 * 13 12 11 33 33 H 1.08993 * 109.47801 * 150.29658 * 13 12 11 34 34 H 0.96999 * 119.99794 * 0.02562 * 14 13 12 35 35 H 1.08999 * 109.74650 * 252.27000 * 18 17 15 36 36 H 1.08994 * 109.74577 * 12.99486 * 18 17 15 37 37 H 1.08997 * 110.34430 * 207.77755 * 21 19 18 38 38 H 1.08997 * 110.34841 * 329.93978 * 21 19 18 39 39 H 1.08993 * 110.34933 * 241.13439 * 22 21 19 40 40 H 1.09003 * 110.33977 * 118.86707 * 22 21 19 41 41 H 1.08997 * 109.74899 * 347.00397 * 25 17 15 42 42 H 1.09004 * 109.74699 * 107.73061 * 25 17 15 43 43 H 1.00907 * 110.99557 * 45.86571 * 26 19 18 44 44 H 1.08004 * 119.87009 * 179.69977 * 27 12 11 45 45 H 1.08001 * 120.12160 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5398 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0755 -1.2193 0.1628 9 6 1.3172 -2.4269 -0.2151 10 6 1.7942 -3.6231 0.3520 11 6 1.1173 -4.8009 0.1315 12 6 -0.0371 -4.8097 -0.6362 13 6 -0.7732 -6.1045 -0.8647 14 7 -0.2515 -6.7570 -2.0682 15 6 -0.7629 -7.9374 -2.4704 16 8 -1.7179 -8.4156 -1.8895 17 7 -0.2156 -8.5876 -3.5164 18 6 -0.6839 -9.9305 -3.8942 19 6 -0.9127 -9.9387 -5.4204 20 1 -1.3043 -10.8905 -5.7795 21 6 -1.8435 -8.7552 -5.7692 22 6 -0.8960 -7.5630 -6.0144 23 6 0.5243 -8.1307 -5.7929 24 1 1.2693 -7.6638 -6.4372 25 6 0.8667 -7.9717 -4.3005 26 7 0.3840 -9.5872 -6.0582 27 6 -0.5159 -3.6373 -1.2002 28 6 0.1480 -2.4489 -0.9976 29 1 -0.4850 0.8401 0.0004 30 1 2.6907 -3.6177 0.9544 31 1 1.4841 -5.7209 0.5621 32 1 -0.6310 -6.7599 -0.0055 33 1 -1.8361 -5.9004 -0.9939 34 1 0.4625 -6.3398 -2.5752 35 1 0.0694 -10.6717 -3.6277 36 1 -1.6186 -10.1528 -3.3795 37 1 -2.4159 -8.9761 -6.6701 38 1 -2.5148 -8.5430 -4.9371 39 1 -1.1003 -6.7637 -5.3021 40 1 -1.0028 -7.1979 -7.0359 41 1 0.9457 -6.9135 -4.0514 42 1 1.8099 -8.4732 -4.0836 43 1 1.1436 -10.1053 -5.6425 44 1 -1.4136 -3.6566 -1.8005 45 1 -0.2267 -1.5368 -1.4383 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892200159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:51 Heat of formation + Delta-G solvation = -13.579596 kcal Electronic energy + Delta-G solvation = -26116.809620 eV Core-core repulsion = 22518.905274 eV Total energy + Delta-G solvation = -3597.904346 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.07151 -40.11158 -39.34699 -36.36540 -35.34544 -34.83660 -32.66375 -31.86454 -31.37541 -31.18570 -28.70631 -26.81963 -25.78287 -25.02132 -22.91338 -22.06867 -21.85984 -21.42408 -20.46830 -19.51048 -19.23603 -17.45841 -17.34515 -17.13950 -16.75419 -16.09066 -15.95319 -15.61895 -15.29894 -15.26374 -14.81551 -14.80523 -14.39100 -14.21398 -13.87037 -13.81126 -13.69440 -13.53031 -13.33493 -13.00914 -12.90098 -12.77614 -12.50003 -12.34997 -12.22073 -12.15214 -11.86971 -11.52170 -11.41402 -11.36270 -11.27171 -11.08656 -10.33269 -9.95339 -9.41473 -9.25790 -9.17423 -8.61360 -6.40292 0.79228 1.11232 1.39030 1.44075 1.51949 1.71897 2.09030 2.20588 2.68620 2.99327 3.17886 3.63727 3.69881 3.72123 3.86461 3.88354 4.04207 4.14148 4.28905 4.29194 4.43227 4.49850 4.58913 4.64011 4.65139 4.69360 4.77212 4.83145 4.88107 5.02196 5.03153 5.13029 5.15108 5.20066 5.32462 5.41482 5.44893 5.51343 5.67920 5.69402 5.81462 5.92972 6.08410 6.17737 6.35228 6.35900 6.67443 6.91670 6.92710 6.99415 7.50995 8.34233 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023085 B = 0.002721 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.601131 B =10287.034901 C =10732.227579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.032 3.968 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.496 4.496 8 H 0.077 0.923 9 C 0.086 3.914 10 C -0.235 4.235 11 C -0.070 4.070 12 C -0.221 4.221 13 C 0.212 3.788 14 N -0.729 5.729 15 C 0.701 3.299 16 O -0.637 6.637 17 N -0.624 5.624 18 C 0.097 3.903 19 C 0.061 3.939 20 H 0.128 0.872 21 C -0.115 4.115 22 C -0.117 4.117 23 C 0.060 3.940 24 H 0.130 0.870 25 C 0.075 3.925 26 N -0.653 5.653 27 C -0.085 4.085 28 C -0.181 4.181 29 H 0.287 0.713 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.403 0.597 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.347 0.653 44 H 0.102 0.898 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 -14.514 -12.298 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.182 4.182 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.182 1.182 7 C -0.526 4.526 8 H 0.095 0.905 9 C 0.084 3.916 10 C -0.255 4.255 11 C -0.088 4.088 12 C -0.222 4.222 13 C 0.089 3.911 14 N -0.386 5.386 15 C 0.403 3.597 16 O -0.519 6.519 17 N -0.361 5.361 18 C -0.027 4.027 19 C -0.050 4.050 20 H 0.146 0.854 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.050 4.050 24 H 0.147 0.853 25 C -0.049 4.049 26 N -0.282 5.282 27 C -0.104 4.104 28 C -0.201 4.201 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.133 0.867 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.240 0.760 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.165 0.835 44 H 0.120 0.880 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.979 -14.685 -12.565 19.352 hybrid contribution 0.522 1.318 1.258 1.895 sum 1.501 -13.367 -11.307 17.572 Atomic orbital electron populations 1.69850 1.08867 1.30392 1.36651 1.26759 0.95609 1.04510 0.91364 0.85158 0.78924 0.75875 0.79499 1.18592 1.19540 1.18223 1.19888 0.96049 0.91614 1.45035 0.90479 1.18017 0.92076 0.93099 0.88457 1.21216 1.03666 0.93646 1.06969 1.20673 0.94289 0.96761 0.97125 1.19212 1.00329 0.93459 1.09228 1.19561 0.95755 0.90028 0.85766 1.45562 1.41673 1.21320 1.29998 1.16059 0.81965 0.80966 0.80717 1.90849 1.30780 1.69919 1.60393 1.47267 1.39362 1.18676 1.30815 1.22529 1.01104 0.82036 0.97028 1.23339 0.91422 1.00127 0.90076 0.85421 1.22236 0.97488 0.94624 1.01020 1.22258 0.94128 0.97328 1.01784 1.23273 0.98228 0.90475 0.93065 0.85268 1.22764 0.89875 0.99344 0.92891 1.63876 1.04180 1.03445 1.56708 1.20755 0.98265 0.92585 0.98759 1.21308 0.99390 0.96730 1.02669 0.90251 0.88163 0.86650 0.92499 0.93219 0.75983 0.90007 0.90554 0.90342 0.93630 0.93275 0.90316 0.89948 0.89331 0.83488 0.88014 0.87995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.88 10.83 21.83 0.24 -42.64 16 2 C 0.03 1.56 5.26 85.26 0.45 2.01 16 3 Si 0.98 37.39 29.57 68.60 2.03 39.42 16 4 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 5 H -0.27 -9.89 7.11 99.48 0.71 -9.18 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 7 C -0.50 -25.93 9.06 23.46 0.21 -25.71 16 8 H 0.08 3.87 7.87 -2.91 -0.02 3.85 16 9 C 0.09 4.46 5.55 -21.29 -0.12 4.34 16 10 C -0.24 -10.95 9.80 22.73 0.22 -10.73 16 11 C -0.07 -2.85 9.67 22.22 0.21 -2.64 16 12 C -0.22 -8.83 5.27 -19.68 -0.10 -8.93 16 13 C 0.21 7.53 5.79 85.63 0.50 8.02 16 14 N -0.73 -22.48 5.45 -482.31 -2.63 -25.11 16 15 C 0.70 22.12 8.30 179.05 1.49 23.61 16 16 O -0.64 -25.17 15.81 -3.97 -0.06 -25.23 16 17 N -0.62 -14.25 2.24 -832.05 -1.86 -16.11 16 18 C 0.10 1.87 5.75 86.70 0.50 2.37 16 19 C 0.06 0.93 4.60 45.54 0.21 1.14 16 20 H 0.13 1.50 8.14 -2.39 -0.02 1.49 16 21 C -0.12 -2.16 6.18 31.55 0.19 -1.96 16 22 C -0.12 -2.13 6.17 31.55 0.19 -1.94 16 23 C 0.06 0.88 4.59 45.41 0.21 1.09 16 24 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 25 C 0.08 1.27 5.59 86.57 0.48 1.75 16 26 N -0.65 -8.84 7.39 -452.20 -3.34 -12.18 16 27 C -0.08 -3.74 9.67 22.22 0.21 -3.53 16 28 C -0.18 -9.19 8.66 22.73 0.20 -8.99 16 29 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 30 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 31 H 0.12 4.07 8.06 -2.91 -0.02 4.05 16 32 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 33 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 34 H 0.40 11.18 6.03 -92.71 -0.56 10.62 16 35 H 0.08 1.28 8.13 -2.39 -0.02 1.26 16 36 H 0.08 1.84 7.07 -2.39 -0.02 1.82 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.04 1.09 7.85 -2.39 -0.02 1.07 16 39 H 0.05 1.10 7.84 -2.39 -0.02 1.08 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.48 5.84 -2.39 -0.01 1.47 16 42 H 0.09 1.20 8.13 -2.38 -0.02 1.18 16 43 H 0.35 3.74 8.34 -89.69 -0.75 2.99 16 44 H 0.10 4.14 8.06 -2.91 -0.02 4.12 16 45 H 0.10 5.48 6.23 -2.91 -0.02 5.46 16 Total: -1.00 -62.58 357.05 -0.86 -63.44 By element: Atomic # 1 Polarization: 38.80 SS G_CDS: -0.29 Total: 38.51 kcal Atomic # 6 Polarization: -25.17 SS G_CDS: 5.06 Total: -20.10 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -7.59 Total: -96.03 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.06 Total: -25.23 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -62.58 -0.86 -63.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892200159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.857 kcal (2) G-P(sol) polarization free energy of solvation -62.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds