Wall clock time and date at job start Tue Mar 31 2020 11:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46423 * 111.00106 * 2 1 4 4 C 1.53378 * 108.65843 * 72.14584 * 3 2 1 5 5 C 1.53040 * 107.93842 * 68.21676 * 4 3 2 6 6 H 1.08995 * 109.41090 * 72.73924 * 5 4 3 7 7 C 1.50699 * 109.43863 * 192.64156 * 5 4 3 8 8 O 1.20829 * 120.00252 * 34.00025 * 7 5 4 9 9 O 1.34224 * 120.00011 * 214.00006 * 7 5 4 10 10 C 1.45202 * 117.00046 * 182.10127 * 9 7 5 11 11 C 1.50702 * 112.85147 * 55.39195 * 10 9 7 12 12 H 1.07993 * 119.99595 * 265.24257 * 11 10 9 13 13 C 1.37877 * 119.99587 * 85.24010 * 11 10 9 14 14 N 1.31513 * 119.99670 * 174.16949 * 13 11 10 15 15 Si 1.86797 * 120.00264 * 354.17552 * 13 11 10 16 16 H 1.48496 * 109.47456 * 94.80260 * 15 13 11 17 17 H 1.48500 * 109.46914 * 214.80388 * 15 13 11 18 18 H 1.48496 * 109.46994 * 334.79972 * 15 13 11 19 19 C 1.53783 * 113.61220 * 284.08669 * 10 9 7 20 20 C 1.53783 * 87.08099 * 220.02090 * 19 10 9 21 21 C 1.53780 * 87.08053 * 25.43356 * 20 19 10 22 22 C 1.50806 * 109.66041 * 312.69809 * 5 4 3 23 23 C 1.38613 * 118.12101 * 195.31787 * 22 5 4 24 24 C 1.38054 * 120.48567 * 180.68009 * 23 22 5 25 25 C 1.38313 * 119.88948 * 359.96478 * 24 23 22 26 26 C 1.37819 * 119.95010 * 359.86258 * 25 24 23 27 27 C 1.38368 * 122.01064 * 15.71403 * 22 5 4 28 28 H 1.08994 * 109.47081 * 289.32761 * 1 2 3 29 29 H 1.09007 * 109.46845 * 49.32209 * 1 2 3 30 30 H 1.08999 * 109.47140 * 169.31999 * 1 2 3 31 31 H 1.08997 * 109.60490 * 191.89712 * 3 2 1 32 32 H 1.08994 * 109.60573 * 312.39238 * 3 2 1 33 33 H 1.08999 * 109.76463 * 308.60347 * 4 3 2 34 34 H 1.09000 * 109.81226 * 187.85256 * 4 3 2 35 35 H 0.96999 * 120.00115 * 180.02562 * 14 13 11 36 36 H 1.08999 * 113.61761 * 334.56916 * 19 10 9 37 37 H 1.09002 * 113.61620 * 105.47344 * 19 10 9 38 38 H 1.09006 * 113.61178 * 270.88247 * 20 19 10 39 39 H 1.08998 * 113.61588 * 139.98447 * 20 19 10 40 40 H 1.09000 * 113.61192 * 220.01954 * 21 20 19 41 41 H 1.08989 * 113.69152 * 89.12959 * 21 20 19 42 42 H 1.07999 * 119.76420 * 0.64571 * 23 22 5 43 43 H 1.08001 * 120.05879 * 179.97438 * 24 23 22 44 44 H 1.07991 * 120.02655 * 179.83761 * 25 24 23 45 45 H 1.07997 * 119.78917 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9938 1.3670 0.0000 4 6 1.7537 1.9847 1.3832 5 6 2.6484 1.2545 2.3873 6 1 3.6849 1.5553 2.2347 7 6 2.2240 1.6105 3.7888 8 8 1.0582 1.8125 4.0341 9 8 3.1410 1.7032 4.7646 10 6 2.6550 2.0038 6.0995 11 6 1.6082 1.0293 6.5745 12 1 0.5605 1.2579 6.4474 13 6 1.9884 -0.1541 7.1713 14 7 1.0793 -0.9513 7.6886 15 14 3.7945 -0.6249 7.2451 16 1 4.3662 -0.1922 8.5455 17 1 3.9279 -2.0979 7.1114 18 1 4.5253 0.0409 6.1371 19 6 2.2609 3.4775 6.2941 20 6 2.9045 3.3838 7.6877 21 6 3.7766 2.2504 7.1223 22 6 2.5238 -0.2352 2.1883 23 6 2.9927 -1.0698 3.1908 24 6 2.9158 -2.4413 3.0534 25 6 2.3666 -2.9896 1.9084 26 6 1.8950 -2.1660 0.9090 27 6 1.9686 -0.7783 1.0432 28 1 -0.3633 0.3401 0.9697 29 1 -0.3633 0.6699 -0.7794 30 1 -0.3633 -1.0099 -0.1904 31 1 3.0629 1.3483 -0.2117 32 1 1.4786 1.9565 -0.7583 33 1 0.7078 1.8631 1.6647 34 1 2.0094 3.0442 1.3640 35 1 1.3467 -1.7836 8.1088 36 1 2.7775 4.1604 5.6197 37 1 1.1836 3.6416 6.3208 38 1 2.2147 3.0573 8.4661 39 1 3.4706 4.2721 7.9678 40 1 3.9229 1.4238 7.8176 41 1 4.7079 2.5964 6.6741 42 1 3.4219 -0.6441 4.0857 43 1 3.2836 -3.0851 3.8386 44 1 2.3077 -4.0622 1.7975 45 1 1.4664 -2.5969 0.0163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892984560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:23 Heat of formation + Delta-G solvation = -17.891784 kcal Electronic energy + Delta-G solvation = -28036.449835 eV Core-core repulsion = 24406.065748 eV Total energy + Delta-G solvation = -3630.384088 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.77831 -39.36924 -37.46035 -36.80113 -34.49970 -33.63674 -32.38097 -30.25225 -29.69532 -27.51774 -26.58519 -25.12541 -24.64598 -23.33101 -22.83198 -21.97935 -20.21970 -19.11542 -18.72022 -17.36607 -16.76811 -16.06873 -15.92904 -15.54972 -15.54646 -15.33695 -14.51589 -14.23195 -14.10179 -13.87232 -13.61884 -13.13936 -13.05470 -12.81387 -12.72368 -12.30765 -12.04583 -12.00111 -11.92063 -11.78367 -11.58626 -11.18668 -11.10592 -10.92612 -10.79783 -10.65080 -10.46246 -10.21998 -9.94783 -9.77726 -9.62920 -9.17813 -8.87118 -8.77681 -8.71499 -8.42302 -7.78588 -6.25969 -4.31945 1.53145 1.65838 3.13722 3.20187 3.30533 3.37038 3.65622 3.79257 4.12797 4.26326 4.72339 4.85110 4.94054 5.06629 5.18541 5.28680 5.35638 5.37637 5.44731 5.47650 5.52163 5.54021 5.64873 5.69208 5.71546 5.76944 5.81877 5.83453 5.85903 6.03378 6.11470 6.27365 6.31601 6.32550 6.35255 6.49302 6.49501 6.66674 6.80758 6.86155 6.90489 6.96350 7.07555 7.21099 7.41866 7.50786 7.82206 8.37284 8.87138 8.99002 9.34531 10.84366 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015327 B = 0.006007 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.402086 B = 4659.811245 C = 5715.243472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.502 5.502 3 C 0.059 3.941 4 C -0.147 4.147 5 C -0.044 4.044 6 H 0.103 0.897 7 C 0.472 3.528 8 O -0.488 6.488 9 O -0.374 6.374 10 C 0.199 3.801 11 C -0.503 4.503 12 H 0.089 0.911 13 C 0.084 3.916 14 N -0.874 5.874 15 Si 0.872 3.128 16 H -0.278 1.278 17 H -0.293 1.293 18 H -0.247 1.247 19 C -0.146 4.146 20 C -0.122 4.122 21 C -0.140 4.140 22 C -0.105 4.105 23 C -0.087 4.087 24 C -0.130 4.130 25 C -0.106 4.106 26 C -0.126 4.126 27 C 0.113 3.887 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.268 0.732 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.131 0.869 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.417 2.118 -13.151 14.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.219 5.219 3 C -0.069 4.069 4 C -0.186 4.186 5 C -0.064 4.064 6 H 0.121 0.879 7 C 0.313 3.687 8 O -0.374 6.374 9 O -0.292 6.292 10 C 0.165 3.835 11 C -0.540 4.540 12 H 0.107 0.893 13 C -0.122 4.122 14 N -0.511 5.511 15 Si 0.701 3.299 16 H -0.206 1.206 17 H -0.221 1.221 18 H -0.171 1.171 19 C -0.184 4.184 20 C -0.159 4.159 21 C -0.177 4.177 22 C -0.108 4.108 23 C -0.106 4.106 24 C -0.148 4.148 25 C -0.125 4.125 26 C -0.146 4.146 27 C 0.018 3.982 28 H 0.060 0.940 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.149 0.851 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.131 1.862 -13.406 14.151 hybrid contribution 0.660 -0.108 1.046 1.242 sum 4.792 1.754 -12.360 13.372 Atomic orbital electron populations 1.22488 0.85215 1.02827 1.01414 1.58814 1.08418 1.12959 1.41712 1.22238 1.01349 0.87287 0.95997 1.22183 1.01477 0.99988 0.94969 1.19966 1.01947 0.92908 0.91561 0.87890 1.22506 0.85012 0.74630 0.86600 1.90588 1.19297 1.44451 1.83051 1.86521 1.41821 1.80472 1.20421 1.21748 0.92595 0.93041 0.76080 1.20835 0.93632 1.01981 1.37552 0.89282 1.25083 0.97552 0.95851 0.93672 1.69894 1.33692 1.11804 1.35702 0.87138 0.86238 0.77119 0.79436 1.20581 1.22091 1.17054 1.23335 1.01018 0.97693 0.96335 1.22468 0.98998 0.97121 0.97340 1.23338 0.97483 0.98843 0.98020 1.19432 1.03739 0.93538 0.94070 1.21308 0.97463 0.93689 0.98106 1.21072 1.00809 0.94975 0.97974 1.20963 0.98335 0.99446 0.93714 1.20892 1.02692 0.91483 0.99502 1.18343 0.98616 0.92576 0.88706 0.94002 0.90948 0.91021 0.89990 0.89583 0.89500 0.90265 0.92234 0.91902 0.91213 0.89389 0.92345 0.91547 0.90894 0.85141 0.86094 0.86007 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.06 60.07 0.54 0.86 16 2 N -0.50 -6.74 4.74 -179.14 -0.85 -7.59 16 3 C 0.06 0.69 5.82 -3.89 -0.02 0.67 16 4 C -0.15 -2.11 5.19 -26.51 -0.14 -2.25 16 5 C -0.04 -0.77 2.76 -92.85 -0.26 -1.03 16 6 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 7 C 0.47 10.39 5.59 36.01 0.20 10.59 16 8 O -0.49 -12.24 14.26 -18.75 -0.27 -12.51 16 9 O -0.37 -8.66 8.74 -39.24 -0.34 -9.00 16 10 C 0.20 4.76 0.27 -90.96 -0.02 4.74 16 11 C -0.50 -14.18 7.41 -34.44 -0.26 -14.44 16 12 H 0.09 2.85 7.82 -52.49 -0.41 2.44 16 13 C 0.08 2.38 5.44 -17.82 -0.10 2.28 16 14 N -0.87 -26.20 13.96 55.43 0.77 -25.43 16 15 Si 0.87 21.31 23.63 -169.99 -4.02 17.29 16 16 H -0.28 -6.58 6.77 56.52 0.38 -6.20 16 17 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 18 H -0.25 -5.80 6.15 56.52 0.35 -5.46 16 19 C -0.15 -3.08 7.09 -25.92 -0.18 -3.26 16 20 C -0.12 -2.36 7.81 -25.92 -0.20 -2.56 16 21 C -0.14 -3.00 5.79 -25.92 -0.15 -3.15 16 22 C -0.11 -1.90 5.40 -104.38 -0.56 -2.46 16 23 C -0.09 -1.70 9.07 -39.51 -0.36 -2.06 16 24 C -0.13 -2.25 10.05 -39.62 -0.40 -2.65 16 25 C -0.11 -1.57 10.04 -39.71 -0.40 -1.97 16 26 C -0.13 -1.84 9.42 -39.22 -0.37 -2.21 16 27 C 0.11 1.80 5.10 -83.85 -0.43 1.37 16 28 H 0.04 0.60 6.91 -51.93 -0.36 0.24 16 29 H 0.07 0.70 7.88 -51.92 -0.41 0.29 16 30 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 31 H 0.08 0.92 8.11 -51.93 -0.42 0.49 16 32 H 0.09 0.81 7.87 -51.93 -0.41 0.40 16 33 H 0.09 1.43 5.93 -51.93 -0.31 1.12 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.07 1.55 8.10 -51.93 -0.42 1.12 16 38 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.51 3.54 -51.93 -0.18 1.33 16 41 H 0.07 1.40 8.14 -51.94 -0.42 0.98 16 42 H 0.13 2.85 6.23 -52.49 -0.33 2.52 16 43 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 44 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 348.26 15.07 5.25 5.25 Total: -1.00 -32.18 348.26 -9.23 -41.41 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.67 Total: 8.11 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -3.10 Total: -17.52 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: -0.08 Total: -33.02 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.61 Total: -21.51 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.02 Total: 17.29 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.18 -9.23 -41.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892984560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.517 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds