Wall clock time and date at job start Tue Mar 31 2020 11:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46423 * 111.00106 * 2 1 4 4 C 1.53378 * 108.65843 * 72.14584 * 3 2 1 5 5 C 1.53040 * 107.93842 * 68.21676 * 4 3 2 6 6 H 1.08995 * 109.41090 * 72.73924 * 5 4 3 7 7 C 1.50699 * 109.43863 * 192.64156 * 5 4 3 8 8 O 1.20829 * 120.00252 * 34.00025 * 7 5 4 9 9 O 1.34224 * 120.00011 * 214.00006 * 7 5 4 10 10 C 1.45202 * 117.00046 * 182.10127 * 9 7 5 11 11 C 1.50702 * 112.85147 * 55.39195 * 10 9 7 12 12 H 1.07993 * 119.99595 * 265.24257 * 11 10 9 13 13 C 1.37877 * 119.99587 * 85.24010 * 11 10 9 14 14 N 1.31513 * 119.99670 * 174.16949 * 13 11 10 15 15 Si 1.86797 * 120.00264 * 354.17552 * 13 11 10 16 16 H 1.48496 * 109.47456 * 94.80260 * 15 13 11 17 17 H 1.48500 * 109.46914 * 214.80388 * 15 13 11 18 18 H 1.48496 * 109.46994 * 334.79972 * 15 13 11 19 19 C 1.53783 * 113.61220 * 284.08669 * 10 9 7 20 20 C 1.53783 * 87.08099 * 220.02090 * 19 10 9 21 21 C 1.53780 * 87.08053 * 25.43356 * 20 19 10 22 22 C 1.50806 * 109.66041 * 312.69809 * 5 4 3 23 23 C 1.38613 * 118.12101 * 195.31787 * 22 5 4 24 24 C 1.38054 * 120.48567 * 180.68009 * 23 22 5 25 25 C 1.38313 * 119.88948 * 359.96478 * 24 23 22 26 26 C 1.37819 * 119.95010 * 359.86258 * 25 24 23 27 27 C 1.38368 * 122.01064 * 15.71403 * 22 5 4 28 28 H 1.08994 * 109.47081 * 289.32761 * 1 2 3 29 29 H 1.09007 * 109.46845 * 49.32209 * 1 2 3 30 30 H 1.08999 * 109.47140 * 169.31999 * 1 2 3 31 31 H 1.08997 * 109.60490 * 191.89712 * 3 2 1 32 32 H 1.08994 * 109.60573 * 312.39238 * 3 2 1 33 33 H 1.08999 * 109.76463 * 308.60347 * 4 3 2 34 34 H 1.09000 * 109.81226 * 187.85256 * 4 3 2 35 35 H 0.96999 * 120.00115 * 180.02562 * 14 13 11 36 36 H 1.08999 * 113.61761 * 334.56916 * 19 10 9 37 37 H 1.09002 * 113.61620 * 105.47344 * 19 10 9 38 38 H 1.09006 * 113.61178 * 270.88247 * 20 19 10 39 39 H 1.08998 * 113.61588 * 139.98447 * 20 19 10 40 40 H 1.09000 * 113.61192 * 220.01954 * 21 20 19 41 41 H 1.08989 * 113.69152 * 89.12959 * 21 20 19 42 42 H 1.07999 * 119.76420 * 0.64571 * 23 22 5 43 43 H 1.08001 * 120.05879 * 179.97438 * 24 23 22 44 44 H 1.07991 * 120.02655 * 179.83761 * 25 24 23 45 45 H 1.07997 * 119.78917 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9938 1.3670 0.0000 4 6 1.7537 1.9847 1.3832 5 6 2.6484 1.2545 2.3873 6 1 3.6849 1.5553 2.2347 7 6 2.2240 1.6105 3.7888 8 8 1.0582 1.8125 4.0341 9 8 3.1410 1.7032 4.7646 10 6 2.6550 2.0038 6.0995 11 6 1.6082 1.0293 6.5745 12 1 0.5605 1.2579 6.4474 13 6 1.9884 -0.1541 7.1713 14 7 1.0793 -0.9513 7.6886 15 14 3.7945 -0.6249 7.2451 16 1 4.3662 -0.1922 8.5455 17 1 3.9279 -2.0979 7.1114 18 1 4.5253 0.0409 6.1371 19 6 2.2609 3.4775 6.2941 20 6 2.9045 3.3838 7.6877 21 6 3.7766 2.2504 7.1223 22 6 2.5238 -0.2352 2.1883 23 6 2.9927 -1.0698 3.1908 24 6 2.9158 -2.4413 3.0534 25 6 2.3666 -2.9896 1.9084 26 6 1.8950 -2.1660 0.9090 27 6 1.9686 -0.7783 1.0432 28 1 -0.3633 0.3401 0.9697 29 1 -0.3633 0.6699 -0.7794 30 1 -0.3633 -1.0099 -0.1904 31 1 3.0629 1.3483 -0.2117 32 1 1.4786 1.9565 -0.7583 33 1 0.7078 1.8631 1.6647 34 1 2.0094 3.0442 1.3640 35 1 1.3467 -1.7836 8.1088 36 1 2.7775 4.1604 5.6197 37 1 1.1836 3.6416 6.3208 38 1 2.2147 3.0573 8.4661 39 1 3.4706 4.2721 7.9678 40 1 3.9229 1.4238 7.8176 41 1 4.7079 2.5964 6.6741 42 1 3.4219 -0.6441 4.0857 43 1 3.2836 -3.0851 3.8386 44 1 2.3077 -4.0622 1.7975 45 1 1.4664 -2.5969 0.0163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892984560.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:22 Heat of formation + Delta-G solvation = -37.756810 kcal Electronic energy + Delta-G solvation = -28037.311248 eV Core-core repulsion = 24406.065748 eV Total energy + Delta-G solvation = -3631.245500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.14464 -41.01651 -39.18580 -37.97730 -36.31980 -34.96338 -34.56411 -31.43300 -30.93575 -28.98746 -28.29837 -26.85480 -25.97846 -24.81752 -24.16001 -23.40024 -21.71386 -20.64651 -20.37019 -19.13724 -18.19689 -17.61612 -17.51264 -17.30493 -17.08195 -16.76408 -16.00089 -15.69728 -15.40581 -15.22619 -15.19535 -14.92237 -14.63291 -14.30811 -13.96949 -13.70453 -13.51171 -13.42132 -13.21190 -13.11122 -12.93963 -12.80780 -12.76958 -12.43659 -12.34602 -12.03413 -11.98679 -11.90959 -11.71125 -11.57897 -11.37653 -10.96496 -10.75205 -10.58227 -10.34751 -9.76146 -8.96725 -8.46789 -6.58186 0.25373 0.35934 1.16738 1.25040 1.41473 1.51125 2.03654 2.18997 2.64481 2.87312 2.99496 3.47304 3.59793 3.71239 3.77229 3.82891 3.98485 4.02759 4.10271 4.13783 4.19096 4.26846 4.38896 4.43809 4.49099 4.55158 4.58200 4.65831 4.68877 4.70287 4.77511 4.83352 4.90527 4.96608 5.01677 5.08208 5.13528 5.15467 5.30553 5.40171 5.45633 5.55409 5.56168 5.75444 5.88153 5.97676 6.28090 6.33068 6.55858 7.12018 7.16315 8.68527 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.015327 B = 0.006007 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.402086 B = 4659.811245 C = 5715.243472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.497 5.497 3 C 0.062 3.938 4 C -0.142 4.142 5 C -0.039 4.039 6 H 0.124 0.876 7 C 0.467 3.533 8 O -0.530 6.530 9 O -0.374 6.374 10 C 0.179 3.821 11 C -0.506 4.506 12 H 0.028 0.972 13 C 0.033 3.967 14 N -0.926 5.926 15 Si 0.933 3.067 16 H -0.258 1.258 17 H -0.295 1.295 18 H -0.233 1.233 19 C -0.142 4.142 20 C -0.107 4.107 21 C -0.138 4.138 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.149 4.149 25 C -0.098 4.098 26 C -0.123 4.123 27 C 0.113 3.887 28 H 0.010 0.990 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.120 0.880 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.270 0.730 36 H 0.091 0.909 37 H 0.043 0.957 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.053 0.947 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.123 0.877 44 H 0.157 0.843 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.716 2.691 -15.869 17.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.214 5.214 3 C -0.065 4.065 4 C -0.181 4.181 5 C -0.059 4.059 6 H 0.142 0.858 7 C 0.310 3.690 8 O -0.418 6.418 9 O -0.291 6.291 10 C 0.145 3.855 11 C -0.543 4.543 12 H 0.046 0.954 13 C -0.167 4.167 14 N -0.565 5.565 15 Si 0.758 3.242 16 H -0.184 1.184 17 H -0.223 1.223 18 H -0.156 1.156 19 C -0.180 4.180 20 C -0.145 4.145 21 C -0.174 4.174 22 C -0.130 4.130 23 C -0.139 4.139 24 C -0.167 4.167 25 C -0.116 4.116 26 C -0.142 4.142 27 C 0.016 3.984 28 H 0.029 0.971 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.138 0.862 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.125 0.875 40 H 0.071 0.929 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.141 0.859 44 H 0.175 0.825 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.440 2.459 -16.134 17.545 hybrid contribution -0.204 -0.281 1.799 1.832 sum 6.236 2.178 -14.335 15.784 Atomic orbital electron populations 1.22569 0.84378 1.04186 1.00770 1.58948 1.08923 1.13602 1.39886 1.22410 1.02694 0.86543 0.94854 1.22208 0.99114 1.01114 0.95635 1.20105 1.03726 0.93342 0.88685 0.85812 1.23514 0.84339 0.73073 0.88066 1.90577 1.20984 1.46308 1.83965 1.86484 1.41768 1.80627 1.20265 1.21788 0.93379 0.93503 0.76845 1.20769 0.92105 1.03504 1.37941 0.95413 1.25887 1.02258 0.95508 0.93082 1.70037 1.36181 1.12652 1.37606 0.86151 0.80729 0.76684 0.80613 1.18419 1.22265 1.15635 1.23330 1.00012 0.96242 0.98401 1.22413 0.98264 0.98230 0.95559 1.23411 0.98132 0.99128 0.96757 1.19557 1.04965 0.93532 0.94906 1.21239 0.99649 0.95102 0.97890 1.21249 1.01805 0.94260 0.99413 1.21334 0.96559 1.01342 0.92382 1.21306 1.01586 0.90993 1.00324 1.18593 0.97581 0.93675 0.88511 0.97110 0.87859 0.90037 0.88667 0.86188 0.92175 0.88249 0.92049 0.89074 0.93769 0.91250 0.87519 0.92852 0.87569 0.88368 0.85944 0.82523 0.82735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.06 127.69 1.16 1.73 16 2 N -0.50 -11.94 4.74 -720.66 -3.42 -15.36 16 3 C 0.06 1.26 5.82 86.52 0.50 1.76 16 4 C -0.14 -3.88 5.19 30.73 0.16 -3.73 16 5 C -0.04 -1.36 2.76 -12.24 -0.03 -1.39 16 6 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 7 C 0.47 21.21 5.59 71.24 0.40 21.60 16 8 O -0.53 -28.24 14.26 21.95 0.31 -27.92 16 9 O -0.37 -17.49 8.74 -51.35 -0.45 -17.94 16 10 C 0.18 8.71 0.27 -11.01 0.00 8.71 16 11 C -0.51 -30.32 7.41 25.60 0.19 -30.13 16 12 H 0.03 1.95 7.82 -2.91 -0.02 1.92 16 13 C 0.03 1.98 5.44 84.65 0.46 2.44 16 14 N -0.93 -58.84 13.96 21.45 0.30 -58.54 16 15 Si 0.93 45.18 23.63 68.60 1.62 46.81 16 16 H -0.26 -11.58 6.77 99.48 0.67 -10.91 16 17 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 18 H -0.23 -10.68 6.15 99.48 0.61 -10.07 16 19 C -0.14 -5.98 7.09 31.12 0.22 -5.76 16 20 C -0.11 -3.99 7.81 31.12 0.24 -3.74 16 21 C -0.14 -5.65 5.79 31.12 0.18 -5.47 16 22 C -0.13 -4.58 5.40 -19.71 -0.11 -4.68 16 23 C -0.12 -4.84 9.07 22.32 0.20 -4.63 16 24 C -0.15 -5.19 10.05 22.24 0.22 -4.97 16 25 C -0.10 -2.71 10.04 22.19 0.22 -2.49 16 26 C -0.12 -3.28 9.42 22.50 0.21 -3.07 16 27 C 0.11 3.40 5.10 38.30 0.20 3.59 16 28 H 0.01 0.29 6.91 -2.39 -0.02 0.28 16 29 H 0.10 1.63 7.88 -2.38 -0.02 1.61 16 30 H 0.08 1.61 7.90 -2.39 -0.02 1.59 16 31 H 0.10 1.75 8.11 -2.39 -0.02 1.73 16 32 H 0.12 1.69 7.87 -2.39 -0.02 1.67 16 33 H 0.06 1.99 5.93 -2.39 -0.01 1.98 16 34 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 36 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.04 2.04 8.10 -2.39 -0.02 2.02 16 38 H 0.07 2.82 8.14 -2.38 -0.02 2.80 16 39 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 40 H 0.05 2.34 3.54 -2.39 -0.01 2.33 16 41 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 42 H 0.10 4.50 6.23 -2.91 -0.02 4.48 16 43 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 44 H 0.16 3.18 8.06 -2.92 -0.02 3.16 16 45 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -77.59 348.26 3.65 -73.94 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: 0.86 Total: 29.25 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 4.42 Total: -30.23 kcal Atomic # 7 Polarization: -70.78 SS G_CDS: -3.12 Total: -73.90 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -0.14 Total: -45.86 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.62 Total: 46.81 kcal Total: -77.59 3.65 -73.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892984560.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.184 kcal (2) G-P(sol) polarization free energy of solvation -77.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds