Wall clock time and date at job start Tue Mar 31 2020 10:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42902 * 109.47120 * 2 1 4 4 C 1.35777 * 116.99964 * 179.97438 * 3 2 1 5 5 C 1.35125 * 125.83981 * 179.97438 * 4 3 2 6 6 C 1.41453 * 106.79011 * 180.02562 * 5 4 3 7 7 C 1.34437 * 106.89521 * 0.02562 * 6 5 4 8 8 C 1.50703 * 125.73941 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47107 * 89.99717 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.46835 * 325.00273 * 10 9 8 12 12 C 1.53002 * 109.46992 * 205.00108 * 10 9 8 13 13 C 1.50698 * 109.47265 * 65.00404 * 12 10 9 14 14 H 1.08004 * 119.99892 * 359.97438 * 13 12 10 15 15 C 1.37873 * 119.99929 * 179.97438 * 13 12 10 16 16 N 1.31515 * 119.99746 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00261 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46783 * 89.99872 * 17 15 13 19 19 H 1.48493 * 109.47160 * 210.00360 * 17 15 13 20 20 H 1.48497 * 109.46792 * 330.00253 * 17 15 13 21 21 C 1.50697 * 109.46602 * 85.00466 * 10 9 8 22 22 C 1.38233 * 120.00630 * 39.72492 * 21 10 9 23 23 C 1.38232 * 120.00134 * 179.81232 * 22 21 10 24 24 C 1.38232 * 120.00177 * 0.39553 * 23 22 21 25 25 C 1.38233 * 120.00017 * 359.85724 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.95808 * 25 24 23 27 27 O 1.34325 * 125.84075 * 0.31909 * 4 3 2 28 28 H 1.09002 * 109.47135 * 299.99822 * 1 2 3 29 29 H 1.09000 * 109.47503 * 59.99380 * 1 2 3 30 30 H 1.09001 * 109.47522 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47135 * 240.00178 * 2 1 3 32 32 H 1.09002 * 109.47405 * 120.00080 * 2 1 3 33 33 H 1.07998 * 126.60764 * 359.97438 * 5 4 3 34 34 H 1.07995 * 126.54950 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47152 * 329.99805 * 8 7 6 36 36 H 1.09001 * 109.46980 * 209.99905 * 8 7 6 37 37 H 1.00902 * 111.00582 * 303.95889 * 9 8 7 38 38 H 1.08995 * 109.46658 * 185.00246 * 12 10 9 39 39 H 1.09003 * 109.46922 * 304.99986 * 12 10 9 40 40 H 0.97003 * 120.00067 * 180.02562 * 16 15 13 41 41 H 1.07999 * 119.99577 * 359.97438 * 22 21 10 42 42 H 1.08005 * 120.00033 * 180.23345 * 23 22 21 43 43 H 1.08000 * 120.00080 * 179.84052 * 24 23 22 44 44 H 1.07999 * 120.00562 * 179.97438 * 25 24 23 45 45 H 1.08008 * 120.00011 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3523 1.5252 0.0005 5 6 3.9932 2.7148 0.0001 6 6 5.3792 2.4323 0.0004 7 6 5.5051 1.0938 0.0003 8 6 6.8054 0.3320 0.0000 9 7 7.2283 0.0845 1.3848 10 6 8.4951 -0.6584 1.4237 11 1 8.5292 -1.3620 0.5919 12 6 8.5968 -1.4243 2.7443 13 6 7.5172 -2.4742 2.8005 14 1 6.8271 -2.5839 1.9769 15 6 7.4103 -3.2947 3.9034 16 7 6.4684 -4.2112 3.9523 17 14 8.6042 -3.1055 5.3276 18 1 8.0560 -2.1332 6.3071 19 1 8.7969 -4.4204 5.9900 20 1 9.9087 -2.6122 4.8176 21 6 9.6470 0.3069 1.3128 22 6 9.5985 1.5199 1.9741 23 6 10.6568 2.4036 1.8754 24 6 11.7602 2.0780 1.1090 25 6 11.8064 0.8673 0.4435 26 6 10.7497 -0.0181 0.5452 27 8 4.2747 0.5487 -0.0050 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5354 3.6930 -0.0010 34 1 6.1827 3.1539 0.0006 35 1 7.5687 0.9162 -0.5141 36 1 6.6688 -0.6196 -0.5139 37 1 7.2994 0.9485 1.9012 38 1 9.5734 -1.9035 2.8119 39 1 8.4736 -0.7313 3.5766 40 1 6.3929 -4.7882 4.7283 41 1 8.7349 1.7759 2.5698 42 1 10.6206 3.3497 2.3951 43 1 12.5859 2.7696 1.0299 44 1 12.6682 0.6129 -0.1557 45 1 10.7857 -0.9639 0.0249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893194751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:31 Heat of formation + Delta-G solvation = 2.763283 kcal Electronic energy + Delta-G solvation = -25671.105805 eV Core-core repulsion = 22041.617388 eV Total energy + Delta-G solvation = -3629.488417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.47019 -39.38638 -38.51228 -36.29036 -33.22933 -32.75722 -32.01123 -31.31543 -30.73039 -29.40953 -28.24134 -25.16701 -23.97717 -23.16637 -22.26898 -21.71609 -21.64945 -20.29693 -19.70767 -18.57383 -17.26887 -16.85768 -16.38731 -15.67295 -15.41614 -14.97016 -14.89626 -14.78851 -14.18643 -14.01863 -13.69462 -13.42116 -13.35509 -13.14007 -12.78951 -12.75254 -12.70198 -12.56610 -12.43299 -12.27090 -11.75239 -11.69903 -11.42844 -11.18552 -10.97695 -10.93925 -10.75764 -10.26085 -10.16370 -9.74056 -9.68652 -9.08672 -8.76142 -8.44838 -8.40687 -7.96671 -7.69864 -5.92235 -3.86728 1.54645 1.56473 1.92735 2.55393 2.76066 3.33195 3.36534 3.43801 3.46790 3.97200 4.53783 4.71548 4.82317 4.85236 5.00018 5.05500 5.07404 5.10209 5.17935 5.19077 5.30499 5.37272 5.42719 5.50624 5.64570 5.66987 5.70348 5.74167 5.79965 5.86930 5.93603 6.00331 6.13216 6.16934 6.22993 6.52768 6.61137 6.63817 6.64317 6.80491 6.96196 7.12670 7.16939 7.19949 7.45106 7.64721 7.82516 7.94152 8.68416 9.18466 9.70302 11.21646 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.008677 B = 0.004423 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.975460 B = 6328.952597 C = 8983.477090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.048 3.952 3 O -0.271 6.271 4 C 0.181 3.819 5 C -0.237 4.237 6 C -0.185 4.185 7 C 0.000 4.000 8 C 0.138 3.862 9 N -0.654 5.654 10 C 0.140 3.860 11 H 0.084 0.916 12 C 0.005 3.995 13 C -0.490 4.490 14 H 0.078 0.922 15 C 0.063 3.937 16 N -0.907 5.907 17 Si 0.872 3.128 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.268 1.268 21 C -0.099 4.099 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.134 4.134 25 C -0.121 4.121 26 C -0.115 4.115 27 O -0.189 6.189 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.057 0.943 36 H 0.088 0.912 37 H 0.337 0.663 38 H 0.020 0.980 39 H 0.014 0.986 40 H 0.260 0.740 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.331 13.672 -9.957 16.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.187 6.187 4 C 0.087 3.913 5 C -0.257 4.257 6 C -0.205 4.205 7 C -0.049 4.049 8 C 0.010 3.990 9 N -0.286 5.286 10 C 0.030 3.970 11 H 0.102 0.898 12 C -0.033 4.033 13 C -0.529 4.529 14 H 0.096 0.904 15 C -0.136 4.136 16 N -0.547 5.547 17 Si 0.700 3.300 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.192 1.192 21 C -0.101 4.101 22 C -0.139 4.139 23 C -0.137 4.137 24 C -0.153 4.153 25 C -0.139 4.139 26 C -0.134 4.134 27 O -0.089 6.089 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.168 0.832 34 H 0.167 0.833 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.157 0.843 38 H 0.038 0.962 39 H 0.032 0.968 40 H 0.070 0.930 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.032 12.775 -9.773 16.118 hybrid contribution 1.169 0.671 0.752 1.543 sum 0.137 13.446 -9.022 16.193 Atomic orbital electron populations 1.21776 0.92319 1.03236 1.03362 1.22843 0.96035 0.80885 1.02950 1.86414 1.12458 1.29667 1.90117 1.20312 0.80710 0.86963 1.03306 1.20673 0.92532 0.96133 1.16349 1.21320 0.96164 0.94769 1.08252 1.22052 0.83360 0.92036 1.07456 1.20356 0.87215 0.99094 0.92375 1.60612 1.31962 1.25711 1.10306 1.20739 0.82131 0.92046 1.02051 0.89820 1.19583 0.97520 0.95262 0.90910 1.20978 1.13432 1.13707 1.04752 0.90411 1.24970 0.95307 0.95309 0.98050 1.69907 1.33308 1.21456 1.30058 0.86906 0.82494 0.77221 0.83375 1.20515 1.21624 1.19233 1.21187 0.97823 0.95618 0.95434 1.20998 0.99001 0.94192 0.99725 1.21073 0.94043 0.99387 0.99155 1.21047 0.98301 0.97203 0.98701 1.21111 0.98412 0.94458 0.99886 1.21115 0.93601 0.99452 0.99202 1.83990 1.15567 1.36448 1.72895 0.91393 0.91608 0.89965 0.91536 0.90909 0.83239 0.83288 0.92524 0.89337 0.84304 0.96165 0.96777 0.93044 0.86081 0.86477 0.86674 0.86499 0.86003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.15 0.38 -0.95 16 2 C 0.05 0.58 6.41 37.15 0.24 0.81 16 3 O -0.27 -3.90 10.21 -42.18 -0.43 -4.33 16 4 C 0.18 2.86 7.87 29.63 0.23 3.10 16 5 C -0.24 -3.38 10.94 -39.47 -0.43 -3.82 16 6 C -0.18 -2.59 10.80 -39.70 -0.43 -3.02 16 7 C 0.00 0.00 6.83 -35.65 -0.24 -0.24 16 8 C 0.14 2.14 6.01 -4.98 -0.03 2.11 16 9 N -0.65 -11.80 5.93 -109.22 -0.65 -12.45 16 10 C 0.14 2.61 2.17 -68.86 -0.15 2.46 16 11 H 0.08 1.58 7.66 -51.93 -0.40 1.18 16 12 C 0.00 0.11 3.70 -27.88 -0.10 0.01 16 13 C -0.49 -13.74 9.39 -34.44 -0.32 -14.06 16 14 H 0.08 2.38 7.99 -52.48 -0.42 1.96 16 15 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 16 N -0.91 -28.21 13.96 55.43 0.77 -27.44 16 17 Si 0.87 21.97 27.47 -169.99 -4.67 17.30 16 18 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 21 C -0.10 -1.57 4.71 -104.62 -0.49 -2.07 16 22 C -0.12 -1.77 9.12 -39.59 -0.36 -2.13 16 23 C -0.12 -1.51 10.05 -39.59 -0.40 -1.91 16 24 C -0.13 -1.62 10.05 -39.59 -0.40 -2.02 16 25 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 26 C -0.12 -1.67 9.67 -39.58 -0.38 -2.05 16 27 O -0.19 -3.30 10.16 -18.22 -0.19 -3.48 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.15 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.06 0.76 8.00 -51.93 -0.42 0.35 16 36 H 0.09 1.42 8.05 -51.93 -0.42 1.00 16 37 H 0.34 5.63 6.33 -39.29 -0.25 5.39 16 38 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 39 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 40 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 41 H 0.12 1.71 6.50 -52.49 -0.34 1.37 16 42 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 43 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.12 1.63 8.04 -52.48 -0.42 1.21 16 LS Contribution 378.65 15.07 5.71 5.71 Total: -1.00 -32.51 378.65 -9.66 -42.17 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -6.82 Total: 6.46 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -3.38 Total: -23.94 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.13 Total: -39.88 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.62 Total: -7.81 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.51 -9.66 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893194751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.932 kcal (2) G-P(sol) polarization free energy of solvation -32.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds