Wall clock time and date at job start Tue Mar 31 2020 10:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42902 * 109.47120 * 2 1 4 4 C 1.35777 * 116.99964 * 179.97438 * 3 2 1 5 5 C 1.35125 * 125.83981 * 179.97438 * 4 3 2 6 6 C 1.41453 * 106.79011 * 180.02562 * 5 4 3 7 7 C 1.34437 * 106.89521 * 0.02562 * 6 5 4 8 8 C 1.50703 * 125.73941 * 179.97438 * 7 6 5 9 9 N 1.46899 * 109.47107 * 89.99717 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.46835 * 325.00273 * 10 9 8 12 12 C 1.53002 * 109.46992 * 205.00108 * 10 9 8 13 13 C 1.50698 * 109.47265 * 65.00404 * 12 10 9 14 14 H 1.08004 * 119.99892 * 359.97438 * 13 12 10 15 15 C 1.37873 * 119.99929 * 179.97438 * 13 12 10 16 16 N 1.31515 * 119.99746 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00261 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46783 * 89.99872 * 17 15 13 19 19 H 1.48493 * 109.47160 * 210.00360 * 17 15 13 20 20 H 1.48497 * 109.46792 * 330.00253 * 17 15 13 21 21 C 1.50697 * 109.46602 * 85.00466 * 10 9 8 22 22 C 1.38233 * 120.00630 * 39.72492 * 21 10 9 23 23 C 1.38232 * 120.00134 * 179.81232 * 22 21 10 24 24 C 1.38232 * 120.00177 * 0.39553 * 23 22 21 25 25 C 1.38233 * 120.00017 * 359.85724 * 24 23 22 26 26 C 1.38234 * 119.99814 * 359.95808 * 25 24 23 27 27 O 1.34325 * 125.84075 * 0.31909 * 4 3 2 28 28 H 1.09002 * 109.47135 * 299.99822 * 1 2 3 29 29 H 1.09000 * 109.47503 * 59.99380 * 1 2 3 30 30 H 1.09001 * 109.47522 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47135 * 240.00178 * 2 1 3 32 32 H 1.09002 * 109.47405 * 120.00080 * 2 1 3 33 33 H 1.07998 * 126.60764 * 359.97438 * 5 4 3 34 34 H 1.07995 * 126.54950 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.47152 * 329.99805 * 8 7 6 36 36 H 1.09001 * 109.46980 * 209.99905 * 8 7 6 37 37 H 1.00902 * 111.00582 * 303.95889 * 9 8 7 38 38 H 1.08995 * 109.46658 * 185.00246 * 12 10 9 39 39 H 1.09003 * 109.46922 * 304.99986 * 12 10 9 40 40 H 0.97003 * 120.00067 * 180.02562 * 16 15 13 41 41 H 1.07999 * 119.99577 * 359.97438 * 22 21 10 42 42 H 1.08005 * 120.00033 * 180.23345 * 23 22 21 43 43 H 1.08000 * 120.00080 * 179.84052 * 24 23 22 44 44 H 1.07999 * 120.00562 * 179.97438 * 25 24 23 45 45 H 1.08008 * 120.00011 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3523 1.5252 0.0005 5 6 3.9932 2.7148 0.0001 6 6 5.3792 2.4323 0.0004 7 6 5.5051 1.0938 0.0003 8 6 6.8054 0.3320 0.0000 9 7 7.2283 0.0845 1.3848 10 6 8.4951 -0.6584 1.4237 11 1 8.5292 -1.3620 0.5919 12 6 8.5968 -1.4243 2.7443 13 6 7.5172 -2.4742 2.8005 14 1 6.8271 -2.5839 1.9769 15 6 7.4103 -3.2947 3.9034 16 7 6.4684 -4.2112 3.9523 17 14 8.6042 -3.1055 5.3276 18 1 8.0560 -2.1332 6.3071 19 1 8.7969 -4.4204 5.9900 20 1 9.9087 -2.6122 4.8176 21 6 9.6470 0.3069 1.3128 22 6 9.5985 1.5199 1.9741 23 6 10.6568 2.4036 1.8754 24 6 11.7602 2.0780 1.1090 25 6 11.8064 0.8673 0.4435 26 6 10.7497 -0.0181 0.5452 27 8 4.2747 0.5487 -0.0050 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5354 3.6930 -0.0010 34 1 6.1827 3.1539 0.0006 35 1 7.5687 0.9162 -0.5141 36 1 6.6688 -0.6196 -0.5139 37 1 7.2994 0.9485 1.9012 38 1 9.5734 -1.9035 2.8119 39 1 8.4736 -0.7313 3.5766 40 1 6.3929 -4.7882 4.7283 41 1 8.7349 1.7759 2.5698 42 1 10.6206 3.3497 2.3951 43 1 12.5859 2.7696 1.0299 44 1 12.6682 0.6129 -0.1557 45 1 10.7857 -0.9639 0.0249 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893194751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:30 Heat of formation + Delta-G solvation = -15.844876 kcal Electronic energy + Delta-G solvation = -25671.912715 eV Core-core repulsion = 22041.617388 eV Total energy + Delta-G solvation = -3630.295327 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.66877 -40.52438 -39.60095 -37.60217 -34.97674 -34.18157 -33.34472 -32.40752 -31.73877 -30.91709 -29.61791 -26.65025 -25.29455 -24.19189 -23.48870 -23.12502 -22.78794 -21.48051 -21.13648 -19.71772 -18.99509 -18.02597 -17.92637 -16.92125 -16.58970 -16.18887 -16.08753 -16.02900 -15.87814 -15.18796 -14.94016 -14.91921 -14.43438 -14.34353 -14.14158 -13.98019 -13.80182 -13.72738 -13.66045 -13.43348 -13.33295 -12.88879 -12.73595 -12.59235 -12.28473 -12.20633 -11.92951 -11.86934 -11.71307 -11.64116 -11.22870 -10.85967 -10.69427 -9.77090 -9.55845 -9.27344 -8.92423 -8.19080 -6.18054 0.49722 0.55423 0.71346 1.36154 1.37080 1.43372 1.48333 1.62610 2.24254 2.40490 2.93729 3.14408 3.42512 3.81137 3.89409 3.93970 3.98004 4.00224 4.02212 4.21414 4.21995 4.27581 4.34668 4.45011 4.48216 4.56982 4.69014 4.76560 4.82179 4.84235 4.86789 4.89710 5.00170 5.13139 5.13613 5.19047 5.22616 5.38823 5.51863 5.61808 5.66400 5.68982 5.74062 5.81405 6.18001 6.20261 6.29224 6.43401 6.58025 6.89227 7.42424 8.98378 Molecular weight = 315.16amu Principal moments of inertia in cm(-1) A = 0.008677 B = 0.004423 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.975460 B = 6328.952597 C = 8983.477090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.042 3.958 3 O -0.275 6.275 4 C 0.160 3.840 5 C -0.234 4.234 6 C -0.167 4.167 7 C -0.029 4.029 8 C 0.148 3.852 9 N -0.678 5.678 10 C 0.151 3.849 11 H 0.070 0.930 12 C 0.010 3.990 13 C -0.488 4.488 14 H 0.034 0.966 15 C -0.001 4.001 16 N -0.957 5.957 17 Si 0.943 3.057 18 H -0.273 1.273 19 H -0.287 1.287 20 H -0.249 1.249 21 C -0.116 4.116 22 C -0.131 4.131 23 C -0.118 4.118 24 C -0.128 4.128 25 C -0.120 4.120 26 C -0.129 4.129 27 O -0.218 6.218 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.175 0.825 34 H 0.179 0.821 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.343 0.657 38 H 0.019 0.981 39 H 0.013 0.987 40 H 0.261 0.739 41 H 0.120 0.880 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.840 16.642 -9.918 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.033 4.033 3 O -0.191 6.191 4 C 0.066 3.934 5 C -0.254 4.254 6 C -0.186 4.186 7 C -0.077 4.077 8 C 0.020 3.980 9 N -0.311 5.311 10 C 0.042 3.958 11 H 0.088 0.912 12 C -0.028 4.028 13 C -0.527 4.527 14 H 0.053 0.947 15 C -0.196 4.196 16 N -0.600 5.600 17 Si 0.767 3.233 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.173 1.173 21 C -0.118 4.118 22 C -0.149 4.149 23 C -0.136 4.136 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.147 4.147 27 O -0.119 6.119 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.193 0.807 34 H 0.197 0.803 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.164 0.836 38 H 0.037 0.963 39 H 0.032 0.968 40 H 0.070 0.930 41 H 0.138 0.862 42 H 0.161 0.839 43 H 0.165 0.835 44 H 0.161 0.839 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.150 15.767 -9.751 18.574 hybrid contribution 0.452 -0.224 0.650 0.822 sum 1.602 15.543 -9.101 18.083 Atomic orbital electron populations 1.21793 0.89506 1.04587 1.04015 1.23028 0.98231 0.80032 1.01997 1.86409 1.11910 1.30690 1.90070 1.20789 0.81139 0.87342 1.04133 1.21099 0.92643 0.96629 1.15012 1.21670 0.96867 0.94237 1.05856 1.22254 0.82954 0.93027 1.09498 1.20251 0.87933 0.98778 0.91034 1.60468 1.32029 1.26331 1.12232 1.20304 0.84113 0.92563 0.98829 0.91195 1.19463 0.95298 0.94270 0.93724 1.21236 1.13553 1.14713 1.03185 0.94727 1.25898 0.97319 0.95048 1.01321 1.70078 1.35746 1.22952 1.31213 0.85774 0.80650 0.77331 0.79520 1.19832 1.21326 1.17277 1.20831 0.97285 0.95880 0.97826 1.21081 0.99894 0.94141 0.99821 1.21391 0.93367 0.99891 0.98966 1.21477 0.98751 0.97238 0.97141 1.21429 0.98406 0.94201 0.99786 1.21252 0.93909 1.00207 0.99373 1.83954 1.16502 1.37838 1.73619 0.91182 0.90439 0.88253 0.91546 0.92899 0.80712 0.80320 0.89950 0.91113 0.83573 0.96263 0.96844 0.93033 0.86242 0.83881 0.83483 0.83901 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 10.28 71.98 0.74 -1.73 16 2 C 0.04 1.05 6.41 71.98 0.46 1.52 16 3 O -0.28 -8.06 10.21 -68.94 -0.70 -8.77 16 4 C 0.16 5.13 7.87 67.10 0.53 5.66 16 5 C -0.23 -6.40 10.94 22.34 0.24 -6.16 16 6 C -0.17 -4.43 10.80 22.19 0.24 -4.19 16 7 C -0.03 -0.94 6.83 24.82 0.17 -0.77 16 8 C 0.15 4.73 6.01 85.56 0.51 5.24 16 9 N -0.68 -25.17 5.93 -499.45 -2.96 -28.13 16 10 C 0.15 5.79 2.17 44.17 0.10 5.88 16 11 H 0.07 2.78 7.66 -2.39 -0.02 2.76 16 12 C 0.01 0.48 3.70 29.85 0.11 0.59 16 13 C -0.49 -28.55 9.39 25.60 0.24 -28.31 16 14 H 0.03 2.26 7.99 -2.91 -0.02 2.24 16 15 C 0.00 -0.05 5.47 84.65 0.46 0.41 16 16 N -0.96 -61.95 13.96 21.45 0.30 -61.66 16 17 Si 0.94 45.90 27.47 68.60 1.88 47.78 16 18 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 20 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 21 C -0.12 -3.60 4.71 -19.87 -0.09 -3.69 16 22 C -0.13 -3.56 9.12 22.27 0.20 -3.36 16 23 C -0.12 -2.57 10.05 22.27 0.22 -2.35 16 24 C -0.13 -2.53 10.05 22.27 0.22 -2.31 16 25 C -0.12 -2.62 10.05 22.27 0.22 -2.40 16 26 C -0.13 -3.52 9.67 22.27 0.22 -3.30 16 27 O -0.22 -7.96 10.16 16.78 0.17 -7.79 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.18 3.77 8.06 -2.91 -0.02 3.74 16 34 H 0.18 3.56 8.06 -2.91 -0.02 3.53 16 35 H 0.08 2.17 8.00 -2.39 -0.02 2.15 16 36 H 0.07 2.44 8.05 -2.39 -0.02 2.43 16 37 H 0.34 11.56 6.33 -89.69 -0.57 10.99 16 38 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 39 H 0.01 0.63 7.57 -2.39 -0.02 0.61 16 40 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 41 H 0.12 3.20 6.50 -2.91 -0.02 3.18 16 42 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 43 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 44 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 45 H 0.12 3.21 8.04 -2.91 -0.02 3.18 16 Total: -1.00 -73.41 378.65 3.84 -69.57 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.35 Total: 28.25 kcal Atomic # 6 Polarization: -44.06 SS G_CDS: 4.80 Total: -39.26 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -2.66 Total: -89.79 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: -0.53 Total: -16.56 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 1.88 Total: 47.78 kcal Total: -73.41 3.84 -69.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893194751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.723 kcal (2) G-P(sol) polarization free energy of solvation -73.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds