Wall clock time and date at job start Tue Mar 31 2020 12:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86803 * 119.99602 * 2 1 4 4 H 1.48492 * 109.47223 * 269.99701 * 3 2 1 5 5 H 1.48506 * 109.46914 * 30.00013 * 3 2 1 6 6 H 1.48503 * 109.46742 * 149.99707 * 3 2 1 7 7 C 1.39891 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00027 * 197.08207 * 7 2 1 9 9 C 1.41160 * 119.99904 * 17.08397 * 7 2 1 10 10 C 1.40864 * 120.16109 * 205.50067 * 9 7 2 11 11 C 1.36376 * 119.82798 * 179.97438 * 10 9 7 12 12 C 1.39479 * 120.17019 * 0.02562 * 11 10 9 13 13 N 1.39242 * 119.83732 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99904 * 35.88555 * 13 12 11 15 15 O 1.21577 * 119.99769 * 355.50600 * 14 13 12 16 16 N 1.34779 * 119.99704 * 175.51311 * 14 13 12 17 17 C 1.47087 * 125.42786 * 180.02562 * 16 14 13 18 18 C 1.53426 * 106.98492 * 179.55870 * 17 16 14 19 19 H 1.09004 * 107.99928 * 265.21798 * 18 17 16 20 20 C 1.50068 * 112.64521 * 145.78056 * 18 17 16 21 21 C 1.49828 * 115.87279 * 277.21680 * 20 18 17 22 22 N 1.46478 * 110.70988 * 313.56286 * 21 20 18 23 23 C 1.46723 * 110.30550 * 61.31495 * 22 21 20 24 24 C 1.52900 * 109.62329 * 293.43489 * 23 22 21 25 25 H 1.09005 * 111.41452 * 289.83036 * 24 23 22 26 26 C 1.47037 * 125.43608 * 359.68694 * 16 14 13 27 27 C 1.39487 * 120.32885 * 359.97438 * 12 11 10 28 28 C 1.36367 * 120.17241 * 0.02562 * 27 12 11 29 29 H 0.96990 * 120.00608 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.08552 * 0.25880 * 10 9 7 31 31 H 1.08002 * 119.91801 * 180.02562 * 11 10 9 32 32 H 0.96999 * 119.99636 * 215.89363 * 13 12 11 33 33 H 1.08994 * 109.92925 * 298.88827 * 17 16 14 34 34 H 1.08999 * 109.92804 * 60.22817 * 17 16 14 35 35 H 1.09004 * 108.40898 * 38.14033 * 20 18 17 36 36 H 1.08997 * 108.41285 * 155.37272 * 20 18 17 37 37 H 1.09004 * 109.46080 * 193.16986 * 21 20 18 38 38 H 1.08999 * 109.13706 * 73.75442 * 21 20 18 39 39 H 1.00903 * 111.00296 * 184.77219 * 22 21 20 40 40 H 1.08998 * 109.44807 * 173.38929 * 23 22 21 41 41 H 1.08997 * 109.44951 * 53.48051 * 23 22 21 42 42 H 1.08999 * 110.16075 * 279.68900 * 26 16 14 43 43 H 1.09009 * 110.15694 * 41.45574 * 26 16 14 44 44 H 1.08002 * 119.91237 * 179.97438 * 27 12 11 45 45 H 1.08004 * 120.09025 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0465 -1.4000 5 1 1.4401 2.6527 0.7001 6 1 3.5403 1.4403 0.7001 7 6 2.0084 -1.2115 0.0005 8 1 3.0527 -1.2319 0.2753 9 6 1.3493 -2.4071 -0.3581 10 6 1.8165 -3.6451 0.1251 11 6 1.1743 -4.7960 -0.2252 12 6 0.0580 -4.7496 -1.0601 13 7 -0.5921 -5.9291 -1.4138 14 6 -0.6940 -6.9355 -0.5233 15 8 -0.1485 -6.8466 0.5596 16 7 -1.4005 -8.0406 -0.8333 17 6 -1.5898 -9.2057 0.0444 18 6 -2.4664 -10.2056 -0.7209 19 1 -3.5023 -10.0419 -0.4236 20 6 -2.1123 -11.6326 -0.4204 21 6 -0.9600 -12.1972 -1.1939 22 7 -1.0820 -11.8714 -2.6167 23 6 -1.0677 -10.4169 -2.8091 24 6 -2.3255 -9.8049 -2.1916 25 1 -3.2164 -10.0641 -2.7638 26 6 -2.1108 -8.2710 -2.1000 27 6 -0.4105 -3.5275 -1.5425 28 6 0.2212 -2.3682 -1.2009 29 1 -0.4850 0.8399 -0.0004 30 1 2.6783 -3.6823 0.7750 31 1 1.5310 -5.7460 0.1447 32 1 -0.9716 -6.0263 -2.3012 33 1 -0.6252 -9.6578 0.2750 34 1 -2.0898 -8.9009 0.9637 35 1 -1.8661 -11.7105 0.6386 36 1 -2.9880 -12.2525 -0.6126 37 1 -0.9390 -13.2805 -1.0752 38 1 -0.0310 -11.7769 -0.8087 39 1 -0.3510 -12.3143 -3.1531 40 1 -1.0407 -10.1921 -3.8753 41 1 -0.1853 -9.9958 -2.3275 42 1 -3.0704 -7.7542 -2.0919 43 1 -1.5050 -7.9266 -2.9383 44 1 -1.2753 -3.4994 -2.1889 45 1 -0.1429 -1.4227 -1.5748 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925923421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:45 Heat of formation + Delta-G solvation = 0.299037 kcal Electronic energy + Delta-G solvation = -25978.293530 eV Core-core repulsion = 22380.991007 eV Total energy + Delta-G solvation = -3597.302523 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.80257 -39.20442 -37.31376 -35.78144 -34.40472 -33.09132 -32.50183 -31.37641 -29.52879 -28.86453 -27.86452 -25.57617 -24.47567 -23.23192 -22.29056 -21.39734 -20.70073 -19.43028 -18.91490 -17.83706 -17.25531 -16.93252 -16.26437 -16.11033 -15.31384 -15.19366 -14.92726 -14.55761 -14.08634 -13.89229 -13.52412 -13.45659 -13.15776 -12.83365 -12.75489 -12.64793 -12.42674 -12.16017 -12.02641 -11.79338 -11.52603 -11.25708 -11.10783 -10.99714 -10.91376 -10.78266 -10.71431 -10.54100 -10.04887 -9.55027 -9.42952 -9.13067 -8.86984 -8.79622 -8.49068 -7.49179 -6.92923 -6.70116 -4.26035 2.68446 2.90684 3.08633 3.12917 3.13066 3.19572 3.71263 3.79814 3.95808 4.14444 4.33319 4.37359 4.55662 4.66765 4.72199 4.91106 5.03886 5.10589 5.16887 5.23089 5.30747 5.43561 5.53732 5.55129 5.70081 5.73495 5.77530 5.87276 5.91277 6.00451 6.22341 6.32302 6.50236 6.62390 6.82801 6.96839 7.00827 7.08512 7.17792 7.32395 7.40937 7.66357 7.92416 7.99546 8.09187 8.33255 8.49424 8.64356 8.92734 8.95717 9.15264 10.21997 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.039714 B = 0.002449 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.880128 B =11431.409042 C =11550.945105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.459 4.459 8 H 0.078 0.922 9 C 0.105 3.895 10 C -0.216 4.216 11 C -0.076 4.076 12 C 0.009 3.991 13 N -0.663 5.663 14 C 0.712 3.288 15 O -0.575 6.575 16 N -0.640 5.640 17 C 0.134 3.866 18 C -0.090 4.090 19 H 0.078 0.922 20 C -0.103 4.103 21 C 0.058 3.942 22 N -0.686 5.686 23 C 0.060 3.940 24 C -0.083 4.083 25 H 0.100 0.900 26 C 0.102 3.898 27 C -0.114 4.114 28 C -0.153 4.153 29 H 0.280 0.720 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.390 0.610 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.029 0.971 39 H 0.343 0.657 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.089 0.911 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 -19.391 -6.749 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.489 4.489 8 H 0.096 0.904 9 C 0.102 3.898 10 C -0.236 4.236 11 C -0.097 4.097 12 C -0.083 4.083 13 N -0.309 5.309 14 C 0.415 3.585 15 O -0.452 6.452 16 N -0.380 5.380 17 C 0.011 3.989 18 C -0.109 4.109 19 H 0.096 0.904 20 C -0.142 4.142 21 C -0.071 4.071 22 N -0.316 5.316 23 C -0.070 4.070 24 C -0.103 4.103 25 H 0.118 0.882 26 C -0.022 4.022 27 C -0.135 4.135 28 C -0.173 4.173 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.223 0.777 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.047 0.953 39 H 0.161 0.839 40 H 0.094 0.906 41 H 0.056 0.944 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.646 -19.137 -5.880 21.094 hybrid contribution 0.907 0.967 -0.202 1.341 sum -5.738 -18.170 -6.081 20.002 Atomic orbital electron populations 1.69851 1.07531 1.29124 1.35529 1.25916 0.94738 1.01288 0.92372 0.86304 0.80493 0.80618 0.79242 1.19319 1.20377 1.18638 1.19550 0.97889 0.91174 1.40264 0.90405 1.17662 0.91343 0.92151 0.88636 1.20665 1.03884 0.92664 1.06371 1.20387 0.93590 0.97917 0.97757 1.16987 0.97768 0.83088 1.10468 1.42093 1.59748 1.14596 1.14486 1.15548 0.79611 0.79235 0.84131 1.90910 1.51246 1.79804 1.23241 1.47460 1.55071 1.17884 1.17601 1.21655 0.99324 0.84696 0.93256 1.20941 1.00461 0.94444 0.95082 0.90383 1.20194 0.99200 0.94731 1.00027 1.21261 0.97274 1.00328 0.88272 1.60380 1.53052 1.09424 1.08772 1.21948 0.96739 0.87747 1.00517 1.21943 0.99179 0.93180 0.95954 0.88187 1.22262 0.97057 0.95777 0.87113 1.20205 0.99148 0.91682 1.02417 1.20868 0.99381 0.96235 1.00822 0.90934 0.88765 0.87596 0.77675 0.92118 0.91536 0.91332 0.91176 0.90551 0.95307 0.83920 0.90556 0.94396 0.91476 0.91063 0.89304 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.82 10.97 55.54 0.61 -20.21 16 2 C 0.07 1.89 5.14 -17.34 -0.09 1.80 16 3 Si 0.91 18.87 29.59 -169.99 -5.03 13.84 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.40 9.04 -37.86 -0.34 -12.74 16 8 H 0.08 2.02 7.90 -52.48 -0.41 1.61 16 9 C 0.10 2.87 5.57 -106.80 -0.59 2.27 16 10 C -0.22 -5.64 9.74 -39.26 -0.38 -6.03 16 11 C -0.08 -1.91 8.61 -39.79 -0.34 -2.25 16 12 C 0.01 0.22 6.30 -83.57 -0.53 -0.31 16 13 N -0.66 -12.51 5.26 -14.10 -0.07 -12.58 16 14 C 0.71 13.70 8.31 -86.92 -0.72 12.98 16 15 O -0.58 -13.61 14.11 5.30 0.07 -13.53 16 16 N -0.64 -9.09 3.32 -176.90 -0.59 -9.67 16 17 C 0.13 1.64 6.24 -3.50 -0.02 1.62 16 18 C -0.09 -0.79 2.68 -91.82 -0.25 -1.03 16 19 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 20 C -0.10 -0.77 5.19 -29.76 -0.15 -0.93 16 21 C 0.06 0.43 6.48 -5.63 -0.04 0.40 16 22 N -0.69 -5.22 6.87 -116.04 -0.80 -6.02 16 23 C 0.06 0.50 5.55 -3.97 -0.02 0.48 16 24 C -0.08 -0.69 3.54 -89.49 -0.32 -1.01 16 25 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 26 C 0.10 1.03 5.85 -2.61 -0.02 1.01 16 27 C -0.11 -2.67 9.90 -39.79 -0.39 -3.07 16 28 C -0.15 -4.01 8.63 -39.26 -0.34 -4.34 16 29 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 30 H 0.09 2.35 8.06 -52.49 -0.42 1.92 16 31 H 0.11 2.66 6.26 -52.49 -0.33 2.33 16 32 H 0.39 5.91 7.34 -40.82 -0.30 5.61 16 33 H 0.06 0.79 7.93 -51.93 -0.41 0.38 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.48 7.97 -51.93 -0.41 0.07 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.03 0.25 8.09 -51.93 -0.42 -0.17 16 39 H 0.34 2.14 8.89 -39.29 -0.35 1.79 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.04 0.40 7.89 -51.93 -0.41 -0.01 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.66 7.14 -51.92 -0.37 0.29 16 44 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.12 3.21 6.20 -52.48 -0.33 2.88 16 LS Contribution 355.21 15.07 5.35 5.35 Total: -1.00 -31.80 355.21 -11.68 -43.48 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -6.68 Total: 10.49 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -4.54 Total: -11.15 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.85 Total: -48.48 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.07 Total: -13.53 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.80 -11.68 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925923421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.775 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds