Wall clock time and date at job start Tue Mar 31 2020 12:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86803 * 119.99602 * 2 1 4 4 H 1.48492 * 109.47223 * 269.99701 * 3 2 1 5 5 H 1.48506 * 109.46914 * 30.00013 * 3 2 1 6 6 H 1.48503 * 109.46742 * 149.99707 * 3 2 1 7 7 C 1.39891 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00027 * 197.08207 * 7 2 1 9 9 C 1.41160 * 119.99904 * 17.08397 * 7 2 1 10 10 C 1.40864 * 120.16109 * 205.50067 * 9 7 2 11 11 C 1.36376 * 119.82798 * 179.97438 * 10 9 7 12 12 C 1.39479 * 120.17019 * 0.02562 * 11 10 9 13 13 N 1.39242 * 119.83732 * 179.97438 * 12 11 10 14 14 C 1.34777 * 119.99904 * 35.88555 * 13 12 11 15 15 O 1.21577 * 119.99769 * 355.50600 * 14 13 12 16 16 N 1.34779 * 119.99704 * 175.51311 * 14 13 12 17 17 C 1.47087 * 125.42786 * 180.02562 * 16 14 13 18 18 C 1.53426 * 106.98492 * 179.55870 * 17 16 14 19 19 H 1.09004 * 107.99928 * 265.21798 * 18 17 16 20 20 C 1.50068 * 112.64521 * 145.78056 * 18 17 16 21 21 C 1.49828 * 115.87279 * 277.21680 * 20 18 17 22 22 N 1.46478 * 110.70988 * 313.56286 * 21 20 18 23 23 C 1.46723 * 110.30550 * 61.31495 * 22 21 20 24 24 C 1.52900 * 109.62329 * 293.43489 * 23 22 21 25 25 H 1.09005 * 111.41452 * 289.83036 * 24 23 22 26 26 C 1.47037 * 125.43608 * 359.68694 * 16 14 13 27 27 C 1.39487 * 120.32885 * 359.97438 * 12 11 10 28 28 C 1.36367 * 120.17241 * 0.02562 * 27 12 11 29 29 H 0.96990 * 120.00608 * 0.02562 * 1 2 3 30 30 H 1.07999 * 120.08552 * 0.25880 * 10 9 7 31 31 H 1.08002 * 119.91801 * 180.02562 * 11 10 9 32 32 H 0.96999 * 119.99636 * 215.89363 * 13 12 11 33 33 H 1.08994 * 109.92925 * 298.88827 * 17 16 14 34 34 H 1.08999 * 109.92804 * 60.22817 * 17 16 14 35 35 H 1.09004 * 108.40898 * 38.14033 * 20 18 17 36 36 H 1.08997 * 108.41285 * 155.37272 * 20 18 17 37 37 H 1.09004 * 109.46080 * 193.16986 * 21 20 18 38 38 H 1.08999 * 109.13706 * 73.75442 * 21 20 18 39 39 H 1.00903 * 111.00296 * 184.77219 * 22 21 20 40 40 H 1.08998 * 109.44807 * 173.38929 * 23 22 21 41 41 H 1.08997 * 109.44951 * 53.48051 * 23 22 21 42 42 H 1.08999 * 110.16075 * 279.68900 * 26 16 14 43 43 H 1.09009 * 110.15694 * 41.45574 * 26 16 14 44 44 H 1.08002 * 119.91237 * 179.97438 * 27 12 11 45 45 H 1.08004 * 120.09025 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0465 -1.4000 5 1 1.4401 2.6527 0.7001 6 1 3.5403 1.4403 0.7001 7 6 2.0084 -1.2115 0.0005 8 1 3.0527 -1.2319 0.2753 9 6 1.3493 -2.4071 -0.3581 10 6 1.8165 -3.6451 0.1251 11 6 1.1743 -4.7960 -0.2252 12 6 0.0580 -4.7496 -1.0601 13 7 -0.5921 -5.9291 -1.4138 14 6 -0.6940 -6.9355 -0.5233 15 8 -0.1485 -6.8466 0.5596 16 7 -1.4005 -8.0406 -0.8333 17 6 -1.5898 -9.2057 0.0444 18 6 -2.4664 -10.2056 -0.7209 19 1 -3.5023 -10.0419 -0.4236 20 6 -2.1123 -11.6326 -0.4204 21 6 -0.9600 -12.1972 -1.1939 22 7 -1.0820 -11.8714 -2.6167 23 6 -1.0677 -10.4169 -2.8091 24 6 -2.3255 -9.8049 -2.1916 25 1 -3.2164 -10.0641 -2.7638 26 6 -2.1108 -8.2710 -2.1000 27 6 -0.4105 -3.5275 -1.5425 28 6 0.2212 -2.3682 -1.2009 29 1 -0.4850 0.8399 -0.0004 30 1 2.6783 -3.6823 0.7750 31 1 1.5310 -5.7460 0.1447 32 1 -0.9716 -6.0263 -2.3012 33 1 -0.6252 -9.6578 0.2750 34 1 -2.0898 -8.9009 0.9637 35 1 -1.8661 -11.7105 0.6386 36 1 -2.9880 -12.2525 -0.6126 37 1 -0.9390 -13.2805 -1.0752 38 1 -0.0310 -11.7769 -0.8087 39 1 -0.3510 -12.3143 -3.1531 40 1 -1.0407 -10.1921 -3.8753 41 1 -0.1853 -9.9958 -2.3275 42 1 -3.0704 -7.7542 -2.0919 43 1 -1.5050 -7.9266 -2.9383 44 1 -1.2753 -3.4994 -2.1889 45 1 -0.1429 -1.4227 -1.5748 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925923421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:44 Heat of formation + Delta-G solvation = -20.483808 kcal Electronic energy + Delta-G solvation = -25979.194742 eV Core-core repulsion = 22380.991007 eV Total energy + Delta-G solvation = -3598.203735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.91140 -40.52774 -39.05384 -36.79239 -36.19254 -34.79123 -33.35890 -32.36617 -31.47423 -30.66910 -28.79796 -27.03172 -25.78365 -24.15153 -23.32933 -22.95216 -22.51248 -20.89678 -19.78554 -19.30689 -19.08723 -17.89682 -17.52990 -17.17735 -17.03075 -16.35472 -16.00899 -15.84381 -15.64846 -15.08976 -14.80423 -14.56173 -14.32362 -14.28537 -14.00443 -13.82476 -13.64417 -13.63272 -13.26404 -13.19978 -12.90492 -12.81329 -12.76097 -12.50978 -12.21606 -11.81248 -11.66510 -11.45979 -11.43639 -11.23430 -11.18897 -10.99961 -10.70193 -9.71865 -9.47616 -9.42753 -8.83585 -8.59886 -6.27783 0.83961 1.13602 1.39361 1.47743 1.53011 1.61290 2.13538 2.22592 2.74700 3.06584 3.16080 3.47510 3.62994 3.71562 3.73795 4.06582 4.18207 4.33377 4.37437 4.40479 4.45015 4.49519 4.52848 4.62466 4.65514 4.76600 4.87716 4.89860 4.97266 5.03790 5.09266 5.14500 5.16236 5.23091 5.27831 5.32745 5.42738 5.43477 5.64404 5.80949 6.00354 6.03514 6.11235 6.17582 6.37443 6.46727 6.64926 6.92747 6.99517 6.99679 7.59620 8.33833 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.039714 B = 0.002449 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.880128 B =11431.409042 C =11550.945105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.034 3.966 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.496 4.496 8 H 0.074 0.926 9 C 0.075 3.925 10 C -0.234 4.234 11 C -0.088 4.088 12 C 0.023 3.977 13 N -0.654 5.654 14 C 0.707 3.293 15 O -0.627 6.627 16 N -0.632 5.632 17 C 0.129 3.871 18 C -0.081 4.081 19 H 0.092 0.908 20 C -0.103 4.103 21 C 0.057 3.943 22 N -0.683 5.683 23 C 0.061 3.939 24 C -0.073 4.073 25 H 0.125 0.875 26 C 0.094 3.906 27 C -0.110 4.110 28 C -0.170 4.170 29 H 0.289 0.711 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.411 0.589 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.011 0.989 39 H 0.351 0.649 40 H 0.091 0.909 41 H 0.010 0.990 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.124 0.876 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.960 -20.349 -8.512 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.526 4.526 8 H 0.092 0.908 9 C 0.073 3.927 10 C -0.254 4.254 11 C -0.108 4.108 12 C -0.071 4.071 13 N -0.302 5.302 14 C 0.409 3.591 15 O -0.508 6.508 16 N -0.371 5.371 17 C 0.006 3.994 18 C -0.100 4.100 19 H 0.110 0.890 20 C -0.141 4.141 21 C -0.073 4.073 22 N -0.314 5.314 23 C -0.069 4.069 24 C -0.092 4.092 25 H 0.143 0.857 26 C -0.028 4.028 27 C -0.130 4.130 28 C -0.190 4.190 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.248 0.752 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.029 0.971 39 H 0.170 0.830 40 H 0.109 0.891 41 H 0.029 0.971 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.142 0.858 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.460 -20.167 -7.699 23.186 hybrid contribution 1.388 1.070 0.343 1.786 sum -7.072 -19.097 -7.357 21.653 Atomic orbital electron populations 1.69886 1.08931 1.30665 1.35604 1.26773 0.95558 1.04492 0.91204 0.85154 0.78873 0.75683 0.79665 1.18272 1.19208 1.18547 1.19775 0.98064 0.92406 1.42310 0.90809 1.17982 0.92431 0.92692 0.89624 1.20775 1.04438 0.93128 1.07082 1.20458 0.94533 0.97216 0.98592 1.17016 0.96750 0.84655 1.08635 1.41842 1.59463 1.13331 1.15586 1.15724 0.79722 0.80190 0.83440 1.90874 1.53431 1.81087 1.25394 1.47437 1.53576 1.16535 1.19503 1.21834 0.99340 0.84776 0.93432 1.20943 1.00134 0.94061 0.94894 0.88991 1.20205 0.99775 0.93946 1.00206 1.21309 0.96500 1.01230 0.88239 1.60414 1.53335 1.08841 1.08804 1.21938 0.95667 0.88170 1.01105 1.21970 1.00049 0.91501 0.95728 0.85697 1.22605 0.97413 0.97598 0.85232 1.20452 0.99600 0.90732 1.02206 1.20893 0.99744 0.96929 1.01390 0.89989 0.88959 0.88178 0.75209 0.93582 0.92671 0.91170 0.89606 0.88964 0.97094 0.83039 0.89111 0.97123 0.89829 0.89864 0.85790 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.67 10.97 21.82 0.24 -43.43 16 2 C 0.03 1.77 5.14 85.23 0.44 2.21 16 3 Si 0.99 38.77 29.59 68.60 2.03 40.80 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 7 C -0.50 -27.71 9.04 23.39 0.21 -27.50 16 8 H 0.07 4.01 7.90 -2.91 -0.02 3.98 16 9 C 0.08 4.27 5.57 -21.27 -0.12 4.15 16 10 C -0.23 -12.82 9.74 22.48 0.22 -12.60 16 11 C -0.09 -4.53 8.61 22.13 0.19 -4.34 16 12 C 0.02 1.08 6.30 38.57 0.24 1.33 16 13 N -0.65 -24.02 5.26 -316.78 -1.67 -25.68 16 14 C 0.71 27.13 8.31 179.05 1.49 28.62 16 15 O -0.63 -30.53 14.11 -3.96 -0.06 -30.58 16 16 N -0.63 -17.34 3.32 -831.85 -2.76 -20.10 16 17 C 0.13 3.10 6.24 86.41 0.54 3.64 16 18 C -0.08 -1.23 2.68 -11.57 -0.03 -1.26 16 19 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 20 C -0.10 -1.30 5.19 28.63 0.15 -1.15 16 21 C 0.06 0.74 6.48 85.37 0.55 1.29 16 22 N -0.68 -8.70 6.87 -521.04 -3.58 -12.28 16 23 C 0.06 0.87 5.55 86.30 0.48 1.35 16 24 C -0.07 -0.98 3.54 -10.06 -0.04 -1.02 16 25 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 26 C 0.09 1.62 5.85 87.02 0.51 2.13 16 27 C -0.11 -5.08 9.90 22.13 0.22 -4.86 16 28 C -0.17 -9.02 8.63 22.48 0.19 -8.83 16 29 H 0.29 13.74 8.30 -92.72 -0.77 12.97 16 30 H 0.09 4.89 8.06 -2.91 -0.02 4.87 16 31 H 0.10 5.25 6.26 -2.91 -0.02 5.23 16 32 H 0.41 11.50 7.34 -92.71 -0.68 10.82 16 33 H 0.05 1.24 7.93 -2.39 -0.02 1.22 16 34 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.07 0.87 7.97 -2.39 -0.02 0.86 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.01 0.18 8.09 -2.39 -0.02 0.16 16 39 H 0.35 3.61 8.89 -89.69 -0.80 2.81 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.01 0.21 7.89 -2.39 -0.02 0.19 16 42 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 1.27 7.14 -2.38 -0.02 1.25 16 44 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 45 H 0.11 6.09 6.20 -2.91 -0.02 6.07 16 Total: -1.00 -71.76 355.21 -1.01 -72.77 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: -0.46 Total: 35.32 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 5.25 Total: -16.82 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -7.77 Total: -101.49 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.06 Total: -30.58 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -71.76 -1.01 -72.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925923421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.288 kcal (2) G-P(sol) polarization free energy of solvation -71.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds