Wall clock time and date at job start Tue Mar 31 2020 12:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47201 * 269.99814 * 3 2 1 5 5 H 1.48505 * 109.47067 * 29.99726 * 3 2 1 6 6 H 1.48496 * 109.47455 * 149.99718 * 3 2 1 7 7 C 1.37884 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99696 * 5.63981 * 7 2 1 9 9 C 1.50693 * 119.99781 * 185.63429 * 7 2 1 10 10 H 1.08997 * 109.47531 * 305.22341 * 9 7 2 11 11 O 1.42896 * 109.47555 * 65.22951 * 9 7 2 12 12 C 1.53008 * 109.46980 * 185.22544 * 9 7 2 13 13 N 1.46902 * 109.47040 * 175.04308 * 12 9 7 14 14 C 1.47849 * 110.99864 * 295.57586 * 13 12 9 15 15 C 1.54908 * 104.79295 * 213.63860 * 14 13 12 16 16 C 1.55138 * 101.65523 * 37.07079 * 15 14 13 17 17 C 1.47440 * 110.99705 * 174.73445 * 13 12 9 18 18 H 1.08993 * 109.89207 * 242.82797 * 17 13 12 19 19 C 1.53006 * 109.88851 * 3.85395 * 17 13 12 20 20 N 1.46505 * 109.46810 * 182.56094 * 19 17 13 21 21 C 1.36035 * 126.35028 * 265.64137 * 20 19 17 22 22 N 1.30104 * 110.09926 * 180.02562 * 21 20 19 23 23 C 1.35787 * 109.64369 * 359.97438 * 22 21 20 24 24 C 1.39743 * 133.60055 * 180.02562 * 23 22 21 25 25 C 1.36600 * 119.88545 * 179.97438 * 24 23 22 26 26 C 1.38775 * 120.66820 * 0.02562 * 25 24 23 27 27 C 1.37850 * 120.45224 * 359.97438 * 26 25 24 28 28 C 1.38050 * 126.34680 * 85.33756 * 20 19 17 29 29 H 0.96998 * 120.00180 * 0.02562 * 1 2 3 30 30 H 0.96710 * 113.99854 * 59.99464 * 11 9 7 31 31 H 1.08992 * 109.47089 * 295.04520 * 12 9 7 32 32 H 1.09005 * 109.46767 * 55.04512 * 12 9 7 33 33 H 1.09000 * 110.37558 * 332.46803 * 14 13 12 34 34 H 1.09003 * 110.36868 * 94.81122 * 14 13 12 35 35 H 1.09000 * 110.98640 * 278.97848 * 15 14 13 36 36 H 1.09004 * 110.98910 * 155.16730 * 15 14 13 37 37 H 1.08999 * 110.70726 * 205.96293 * 16 15 14 38 38 H 1.09001 * 110.85258 * 82.80056 * 16 15 14 39 39 H 1.08991 * 109.47198 * 302.56284 * 19 17 13 40 40 H 1.09000 * 109.46955 * 62.56670 * 19 17 13 41 41 H 1.07999 * 124.95106 * 359.97438 * 21 20 19 42 42 H 1.08008 * 120.05405 * 359.94200 * 24 23 22 43 43 H 1.08001 * 119.66499 * 179.97438 * 25 24 23 44 44 H 1.08007 * 119.76903 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.15268 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4684 -2.1272 -0.0910 9 6 3.5060 -1.1971 0.1287 10 1 3.9382 -0.5650 -0.6470 11 8 3.8755 -0.6938 1.4140 12 6 4.0284 -2.6266 -0.0286 13 7 5.4974 -2.6146 -0.0224 14 6 6.0261 -1.8805 -1.1918 15 6 7.3396 -2.6150 -1.5591 16 6 6.9616 -4.0929 -1.2771 17 6 6.0370 -3.9865 -0.0461 18 1 6.6046 -4.1775 0.8645 19 6 4.8920 -4.9943 -0.1665 20 7 5.4332 -6.3551 -0.1277 21 6 5.7590 -7.1242 -1.2014 22 7 6.2106 -8.2780 -0.8044 23 6 6.2059 -8.3277 0.5525 24 6 6.5772 -9.3024 1.4825 25 6 6.4532 -9.0501 2.8192 26 6 5.9603 -7.8326 3.2670 27 6 5.5879 -6.8563 2.3679 28 6 5.7126 -7.0925 1.0054 29 1 -0.4850 0.8400 -0.0004 30 1 3.5249 -1.2088 2.1537 31 1 3.6666 -3.2386 0.7975 32 1 3.6724 -3.0419 -0.9715 33 1 5.3200 -1.9281 -2.0208 34 1 6.2325 -0.8434 -0.9270 35 1 8.1597 -2.2925 -0.9176 36 1 7.5876 -2.4691 -2.6105 37 1 7.8496 -4.6799 -1.0426 38 1 6.4281 -4.5253 -2.1236 39 1 4.1975 -4.8557 0.6619 40 1 4.3684 -4.8383 -1.1097 41 1 5.6568 -6.8216 -2.2331 42 1 6.9610 -10.2538 1.1448 43 1 6.7408 -9.8062 3.5348 44 1 5.8688 -7.6484 4.3273 45 1 5.2046 -5.9106 2.7217 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930092784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:52 Heat of formation + Delta-G solvation = 39.842308 kcal Electronic energy + Delta-G solvation = -26604.698815 eV Core-core repulsion = 23009.111016 eV Total energy + Delta-G solvation = -3595.587798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.26834 -39.54540 -37.36523 -35.98344 -34.33743 -32.33380 -32.01180 -30.96918 -29.43853 -29.31766 -28.11313 -25.54102 -24.76463 -23.36749 -22.28265 -21.69681 -20.88391 -20.63554 -19.33404 -17.46519 -17.35778 -17.12711 -15.92761 -15.88776 -15.74349 -15.17563 -14.81695 -14.66547 -14.40659 -14.15787 -13.92823 -13.71563 -13.64645 -13.06186 -12.92896 -12.68065 -12.37565 -12.22385 -12.08234 -11.79964 -11.55704 -11.42686 -11.26626 -11.10085 -11.05192 -10.96710 -10.68600 -10.54089 -10.35173 -10.03801 -9.86326 -9.21873 -8.73787 -8.48915 -8.42594 -8.24774 -7.92549 -6.22777 -4.34372 0.87960 1.44367 2.49964 2.72484 3.29847 3.39839 3.62135 3.80637 4.08331 4.18569 4.39979 4.41910 4.43139 4.54722 4.69327 4.83799 4.91002 4.95419 5.09719 5.12343 5.15759 5.33172 5.34525 5.42752 5.47637 5.55126 5.64064 5.66673 5.69169 5.73816 5.84637 5.91415 6.04854 6.10972 6.17132 6.21402 6.35941 6.41681 6.42169 6.44828 6.77357 6.99064 7.08560 7.20497 7.29962 7.56691 7.78074 8.19705 8.73918 9.03093 9.42130 10.87951 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018053 B = 0.003458 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.657709 B = 8096.250089 C = 8745.206710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.088 3.912 3 Si 0.874 3.126 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.232 1.232 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.204 3.796 10 H 0.054 0.946 11 O -0.574 6.574 12 C 0.025 3.975 13 N -0.509 5.509 14 C 0.042 3.958 15 C -0.128 4.128 16 C -0.136 4.136 17 C 0.060 3.940 18 H 0.087 0.913 19 C 0.090 3.910 20 N -0.481 5.481 21 C 0.261 3.739 22 N -0.502 5.502 23 C 0.042 3.958 24 C -0.068 4.068 25 C -0.131 4.131 26 C -0.106 4.106 27 C -0.105 4.105 28 C 0.050 3.950 29 H 0.266 0.734 30 H 0.355 0.645 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.208 0.792 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.236 -13.364 0.680 19.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.117 4.117 3 Si 0.700 3.300 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.155 1.155 7 C -0.606 4.606 8 H 0.089 0.911 9 C 0.146 3.854 10 H 0.072 0.928 11 O -0.379 6.379 12 C -0.102 4.102 13 N -0.233 5.233 14 C -0.086 4.086 15 C -0.166 4.166 16 C -0.174 4.174 17 C -0.050 4.050 18 H 0.104 0.896 19 C -0.032 4.032 20 N -0.170 5.170 21 C -0.025 4.025 22 N -0.221 5.221 23 C -0.076 4.076 24 C -0.088 4.088 25 C -0.151 4.151 26 C -0.126 4.126 27 C -0.125 4.125 28 C -0.060 4.060 29 H 0.076 0.924 30 H 0.200 0.800 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.225 0.775 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.146 0.854 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.748 -13.082 0.248 19.715 hybrid contribution -0.797 0.774 -0.182 1.126 sum 13.951 -12.308 0.066 18.604 Atomic orbital electron populations 1.69947 1.06737 1.27581 1.48391 1.24970 0.94571 0.99822 0.92373 0.86859 0.82628 0.82296 0.78200 1.21152 1.21746 1.15470 1.21495 0.90329 0.94913 1.53856 0.91121 1.19675 0.93837 0.88315 0.83566 0.92841 1.86583 1.77874 1.57314 1.16088 1.23173 0.85045 1.02024 1.00003 1.63892 1.09198 1.09477 1.40687 1.23096 0.94704 0.99165 0.91599 1.22694 0.98235 0.94277 1.01357 1.22846 0.99580 0.97666 0.97313 1.22844 0.94391 0.88545 0.99195 0.89552 1.22784 0.97138 0.77816 1.05489 1.45513 1.52113 1.14156 1.05264 1.25276 0.96480 0.86691 0.94023 1.70456 1.22193 1.19358 1.10052 1.19079 1.04157 0.93955 0.90438 1.19982 0.99650 0.97795 0.91358 1.20622 1.01874 0.97615 0.94992 1.20885 0.99327 0.93150 0.99197 1.20061 1.03040 1.00526 0.88911 1.18924 1.04378 0.93408 0.89241 0.92442 0.79964 0.90973 0.94379 0.93265 0.89829 0.90748 0.90905 0.91135 0.91605 0.87981 0.88349 0.77513 0.85674 0.85584 0.85362 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.34 13.96 55.43 0.77 -25.56 16 2 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 3 Si 0.87 21.33 26.88 -169.99 -4.57 16.76 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.23 -5.64 5.85 56.52 0.33 -5.31 16 7 C -0.57 -14.96 9.28 -34.44 -0.32 -15.28 16 8 H 0.07 2.00 7.99 -52.49 -0.42 1.58 16 9 C 0.20 4.46 2.25 -27.88 -0.06 4.40 16 10 H 0.05 1.22 6.11 -51.93 -0.32 0.90 16 11 O -0.57 -12.67 11.08 -35.23 -0.39 -13.06 16 12 C 0.02 0.43 3.25 -3.82 -0.01 0.42 16 13 N -0.51 -7.69 5.15 -223.34 -1.15 -8.84 16 14 C 0.04 0.59 5.49 -2.30 -0.01 0.58 16 15 C -0.13 -1.41 7.08 -24.59 -0.17 -1.59 16 16 C -0.14 -1.45 5.81 -24.91 -0.14 -1.60 16 17 C 0.06 0.74 3.69 -66.72 -0.25 0.49 16 18 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 19 C 0.09 1.06 4.24 -4.04 -0.02 1.05 16 20 N -0.48 -5.80 2.64 -115.79 -0.31 -6.11 16 21 C 0.26 3.02 11.79 -89.79 -1.06 1.97 16 22 N -0.50 -6.99 11.27 -12.05 -0.14 -7.13 16 23 C 0.04 0.58 7.23 -84.70 -0.61 -0.03 16 24 C -0.07 -0.79 10.05 -39.61 -0.40 -1.19 16 25 C -0.13 -1.28 9.96 -39.97 -0.40 -1.68 16 26 C -0.11 -1.07 10.03 -39.52 -0.40 -1.46 16 27 C -0.10 -1.23 10.05 -39.50 -0.40 -1.63 16 28 C 0.05 0.66 6.87 -83.99 -0.58 0.08 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.35 6.96 9.04 45.56 0.41 7.37 16 31 H 0.07 1.21 6.30 -51.93 -0.33 0.89 16 32 H 0.04 0.65 6.76 -51.93 -0.35 0.30 16 33 H 0.05 0.71 7.70 -51.93 -0.40 0.31 16 34 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.64 7.58 -51.93 -0.39 0.24 16 39 H 0.10 1.29 6.28 -51.93 -0.33 0.96 16 40 H 0.10 1.11 6.95 -51.93 -0.36 0.75 16 41 H 0.21 1.64 8.06 -52.49 -0.42 1.21 16 42 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 43 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 45 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 LS Contribution 357.57 15.07 5.39 5.39 Total: -1.00 -32.01 357.57 -11.23 -43.24 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.92 Total: 8.44 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -4.92 Total: -13.12 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.82 Total: -47.64 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.39 Total: -13.06 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.57 Total: 16.76 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.01 -11.23 -43.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930092784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.082 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds