Wall clock time and date at job start Tue Mar 31 2020 12:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47201 * 269.99814 * 3 2 1 5 5 H 1.48505 * 109.47067 * 29.99726 * 3 2 1 6 6 H 1.48496 * 109.47455 * 149.99718 * 3 2 1 7 7 C 1.37884 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99696 * 5.63981 * 7 2 1 9 9 C 1.50693 * 119.99781 * 185.63429 * 7 2 1 10 10 H 1.08997 * 109.47531 * 305.22341 * 9 7 2 11 11 O 1.42896 * 109.47555 * 65.22951 * 9 7 2 12 12 C 1.53008 * 109.46980 * 185.22544 * 9 7 2 13 13 N 1.46902 * 109.47040 * 175.04308 * 12 9 7 14 14 C 1.47849 * 110.99864 * 295.57586 * 13 12 9 15 15 C 1.54908 * 104.79295 * 213.63860 * 14 13 12 16 16 C 1.55138 * 101.65523 * 37.07079 * 15 14 13 17 17 C 1.47440 * 110.99705 * 174.73445 * 13 12 9 18 18 H 1.08993 * 109.89207 * 242.82797 * 17 13 12 19 19 C 1.53006 * 109.88851 * 3.85395 * 17 13 12 20 20 N 1.46505 * 109.46810 * 182.56094 * 19 17 13 21 21 C 1.36035 * 126.35028 * 265.64137 * 20 19 17 22 22 N 1.30104 * 110.09926 * 180.02562 * 21 20 19 23 23 C 1.35787 * 109.64369 * 359.97438 * 22 21 20 24 24 C 1.39743 * 133.60055 * 180.02562 * 23 22 21 25 25 C 1.36600 * 119.88545 * 179.97438 * 24 23 22 26 26 C 1.38775 * 120.66820 * 0.02562 * 25 24 23 27 27 C 1.37850 * 120.45224 * 359.97438 * 26 25 24 28 28 C 1.38050 * 126.34680 * 85.33756 * 20 19 17 29 29 H 0.96998 * 120.00180 * 0.02562 * 1 2 3 30 30 H 0.96710 * 113.99854 * 59.99464 * 11 9 7 31 31 H 1.08992 * 109.47089 * 295.04520 * 12 9 7 32 32 H 1.09005 * 109.46767 * 55.04512 * 12 9 7 33 33 H 1.09000 * 110.37558 * 332.46803 * 14 13 12 34 34 H 1.09003 * 110.36868 * 94.81122 * 14 13 12 35 35 H 1.09000 * 110.98640 * 278.97848 * 15 14 13 36 36 H 1.09004 * 110.98910 * 155.16730 * 15 14 13 37 37 H 1.08999 * 110.70726 * 205.96293 * 16 15 14 38 38 H 1.09001 * 110.85258 * 82.80056 * 16 15 14 39 39 H 1.08991 * 109.47198 * 302.56284 * 19 17 13 40 40 H 1.09000 * 109.46955 * 62.56670 * 19 17 13 41 41 H 1.07999 * 124.95106 * 359.97438 * 21 20 19 42 42 H 1.08008 * 120.05405 * 359.94200 * 24 23 22 43 43 H 1.08001 * 119.66499 * 179.97438 * 25 24 23 44 44 H 1.08007 * 119.76903 * 180.02562 * 26 25 24 45 45 H 1.08003 * 120.15268 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4684 -2.1272 -0.0910 9 6 3.5060 -1.1971 0.1287 10 1 3.9382 -0.5650 -0.6470 11 8 3.8755 -0.6938 1.4140 12 6 4.0284 -2.6266 -0.0286 13 7 5.4974 -2.6146 -0.0224 14 6 6.0261 -1.8805 -1.1918 15 6 7.3396 -2.6150 -1.5591 16 6 6.9616 -4.0929 -1.2771 17 6 6.0370 -3.9865 -0.0461 18 1 6.6046 -4.1775 0.8645 19 6 4.8920 -4.9943 -0.1665 20 7 5.4332 -6.3551 -0.1277 21 6 5.7590 -7.1242 -1.2014 22 7 6.2106 -8.2780 -0.8044 23 6 6.2059 -8.3277 0.5525 24 6 6.5772 -9.3024 1.4825 25 6 6.4532 -9.0501 2.8192 26 6 5.9603 -7.8326 3.2670 27 6 5.5879 -6.8563 2.3679 28 6 5.7126 -7.0925 1.0054 29 1 -0.4850 0.8400 -0.0004 30 1 3.5249 -1.2088 2.1537 31 1 3.6666 -3.2386 0.7975 32 1 3.6724 -3.0419 -0.9715 33 1 5.3200 -1.9281 -2.0208 34 1 6.2325 -0.8434 -0.9270 35 1 8.1597 -2.2925 -0.9176 36 1 7.5876 -2.4691 -2.6105 37 1 7.8496 -4.6799 -1.0426 38 1 6.4281 -4.5253 -2.1236 39 1 4.1975 -4.8557 0.6619 40 1 4.3684 -4.8383 -1.1097 41 1 5.6568 -6.8216 -2.2331 42 1 6.9610 -10.2538 1.1448 43 1 6.7408 -9.8062 3.5348 44 1 5.8688 -7.6484 4.3273 45 1 5.2046 -5.9106 2.7217 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930092784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:51 Heat of formation + Delta-G solvation = 18.680212 kcal Electronic energy + Delta-G solvation = -26605.616472 eV Core-core repulsion = 23009.111016 eV Total energy + Delta-G solvation = -3596.505456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.16041 -40.66427 -38.22939 -37.64662 -35.28599 -34.43446 -33.23922 -31.87924 -30.38728 -30.25177 -29.72554 -26.51517 -26.38754 -24.20888 -23.24513 -23.04367 -21.81938 -21.79036 -20.55098 -19.32379 -18.28572 -18.07429 -17.05809 -16.89452 -16.70879 -16.65595 -16.26023 -16.01176 -15.84398 -15.18144 -15.04026 -14.79977 -14.69764 -14.50920 -14.23887 -13.90071 -13.67318 -13.47312 -13.06147 -12.88811 -12.85355 -12.66353 -12.47340 -12.37295 -12.22234 -12.17740 -12.06725 -11.77349 -11.63656 -11.29428 -11.09283 -10.93934 -10.83561 -10.26393 -9.39894 -9.23071 -8.98221 -8.37632 -6.51192 0.02970 0.58563 1.35366 1.41556 1.59568 1.66457 1.83898 2.39225 2.93731 2.95667 3.00940 3.35540 3.42140 3.51574 3.66064 3.72831 3.85870 4.07623 4.09845 4.14843 4.20494 4.21702 4.31258 4.45937 4.48756 4.51539 4.53290 4.58552 4.66148 4.84135 4.85870 4.91427 4.94432 5.00315 5.11208 5.24364 5.26527 5.41106 5.46573 5.49522 5.59679 5.60322 5.96765 6.00959 6.04319 6.09604 6.20548 6.62273 6.87894 7.22855 7.36808 8.76615 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018053 B = 0.003458 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.657709 B = 8096.250089 C = 8745.206710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.034 3.966 3 Si 0.937 3.063 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.229 1.229 7 C -0.564 4.564 8 H 0.041 0.959 9 C 0.209 3.791 10 H 0.049 0.951 11 O -0.581 6.581 12 C 0.041 3.959 13 N -0.519 5.519 14 C 0.036 3.964 15 C -0.117 4.117 16 C -0.128 4.128 17 C 0.066 3.934 18 H 0.077 0.923 19 C 0.099 3.901 20 N -0.482 5.482 21 C 0.263 3.737 22 N -0.531 5.531 23 C 0.014 3.986 24 C -0.084 4.084 25 C -0.124 4.124 26 C -0.103 4.103 27 C -0.122 4.122 28 C 0.029 3.971 29 H 0.267 0.733 30 H 0.366 0.634 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.046 0.954 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.241 0.759 42 H 0.136 0.864 43 H 0.158 0.842 44 H 0.155 0.845 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.210 -13.873 0.733 21.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.167 4.167 3 Si 0.762 3.238 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.152 1.152 7 C -0.602 4.602 8 H 0.059 0.941 9 C 0.151 3.849 10 H 0.066 0.934 11 O -0.387 6.387 12 C -0.087 4.087 13 N -0.243 5.243 14 C -0.092 4.092 15 C -0.155 4.155 16 C -0.166 4.166 17 C -0.043 4.043 18 H 0.095 0.905 19 C -0.024 4.024 20 N -0.171 5.171 21 C -0.022 4.022 22 N -0.251 5.251 23 C -0.104 4.104 24 C -0.104 4.104 25 C -0.144 4.144 26 C -0.122 4.122 27 C -0.143 4.143 28 C -0.080 4.080 29 H 0.076 0.924 30 H 0.213 0.787 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.124 0.876 41 H 0.257 0.743 42 H 0.153 0.847 43 H 0.176 0.824 44 H 0.173 0.827 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 16.742 -13.608 0.310 21.577 hybrid contribution -1.410 0.835 -0.122 1.643 sum 15.332 -12.774 0.188 19.957 Atomic orbital electron populations 1.70068 1.08342 1.28377 1.50763 1.25779 0.95156 1.03244 0.92487 0.85879 0.81156 0.78378 0.78407 1.20320 1.22049 1.15164 1.21844 0.92783 0.93471 1.52122 0.94111 1.19523 0.90977 0.91055 0.83386 0.93357 1.86519 1.77734 1.57989 1.16418 1.22808 0.86751 0.98828 1.00267 1.63754 1.07460 1.11435 1.41664 1.23137 0.96267 0.98754 0.91039 1.22652 0.96447 0.93742 1.02656 1.22813 0.99396 0.97618 0.96818 1.22742 0.94649 0.87060 0.99815 0.90525 1.22622 0.96615 0.77760 1.05354 1.45494 1.52295 1.14037 1.05284 1.25918 0.95204 0.86018 0.95090 1.70431 1.23591 1.20615 1.10426 1.19484 1.05171 0.94880 0.90821 1.20296 1.00059 0.98043 0.91977 1.21003 1.00385 0.98106 0.94874 1.21280 0.97893 0.92704 1.00329 1.20283 1.03882 1.01298 0.88850 1.19207 1.05096 0.93686 0.89991 0.92402 0.78740 0.90731 0.94195 0.93555 0.91282 0.90684 0.88791 0.90675 0.90058 0.89185 0.87580 0.74327 0.84653 0.82443 0.82718 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.48 13.96 21.45 0.30 -56.18 16 2 C 0.03 1.88 5.47 84.66 0.46 2.35 16 3 Si 0.94 44.23 26.88 68.60 1.84 46.08 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.23 -10.60 5.85 99.48 0.58 -10.02 16 7 C -0.56 -29.99 9.28 25.60 0.24 -29.75 16 8 H 0.04 2.36 7.99 -2.91 -0.02 2.34 16 9 C 0.21 9.00 2.25 29.85 0.07 9.06 16 10 H 0.05 2.16 6.11 -2.39 -0.01 2.14 16 11 O -0.58 -25.00 11.08 -148.98 -1.65 -26.65 16 12 C 0.04 1.40 3.25 86.31 0.28 1.68 16 13 N -0.52 -15.01 5.15 -860.50 -4.43 -19.44 16 14 C 0.04 0.95 5.49 86.77 0.48 1.42 16 15 C -0.12 -2.28 7.08 31.98 0.23 -2.06 16 16 C -0.13 -2.41 5.81 31.78 0.18 -2.22 16 17 C 0.07 1.55 3.69 45.26 0.17 1.71 16 18 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 19 C 0.10 2.23 4.24 86.38 0.37 2.59 16 20 N -0.48 -11.15 2.64 -520.26 -1.37 -12.52 16 21 C 0.26 5.74 11.79 180.06 2.12 7.86 16 22 N -0.53 -14.46 11.27 -192.04 -2.16 -16.62 16 23 C 0.01 0.38 7.23 39.45 0.29 0.67 16 24 C -0.08 -1.86 10.05 22.25 0.22 -1.64 16 25 C -0.12 -2.16 9.96 22.01 0.22 -1.94 16 26 C -0.10 -1.87 10.03 22.31 0.22 -1.65 16 27 C -0.12 -2.79 10.05 22.32 0.22 -2.56 16 28 C 0.03 0.76 6.87 38.86 0.27 1.02 16 29 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.37 14.02 9.04 -74.05 -0.67 13.35 16 31 H 0.07 2.48 6.30 -2.39 -0.02 2.46 16 32 H 0.04 1.33 6.76 -2.38 -0.02 1.32 16 33 H 0.05 1.26 7.70 -2.39 -0.02 1.24 16 34 H 0.07 2.03 8.10 -2.39 -0.02 2.01 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.30 7.58 -2.39 -0.02 1.28 16 39 H 0.09 2.24 6.28 -2.39 -0.02 2.23 16 40 H 0.11 2.22 6.95 -2.39 -0.02 2.20 16 41 H 0.24 3.19 8.06 -2.91 -0.02 3.17 16 42 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 43 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 45 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -69.53 357.57 -1.23 -70.76 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.20 Total: 28.01 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 6.03 Total: -13.45 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -7.67 Total: -104.75 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -1.65 Total: -26.65 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.84 Total: 46.08 kcal Total: -69.53 -1.23 -70.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930092784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.440 kcal (2) G-P(sol) polarization free energy of solvation -69.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds