Wall clock time and date at job start Tue Mar 31 2020 11:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86809 * 119.99996 * 2 1 4 4 H 1.48497 * 109.47097 * 269.99953 * 3 2 1 5 5 H 1.48505 * 109.46802 * 30.00230 * 3 2 1 6 6 H 1.48502 * 109.46957 * 150.00046 * 3 2 1 7 7 C 1.38808 * 120.00393 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00600 * 205.35372 * 7 2 1 9 9 N 1.36942 * 120.00085 * 25.35089 * 7 2 1 10 10 C 1.46957 * 120.59674 * 202.04204 * 9 7 2 11 11 C 1.53372 * 108.63345 * 235.20092 * 10 9 7 12 12 N 1.46953 * 108.63640 * 310.57369 * 11 10 9 13 13 C 1.34781 * 120.59819 * 235.20007 * 12 11 10 14 14 O 1.21513 * 119.99417 * 8.55898 * 13 12 11 15 15 C 1.48169 * 120.00324 * 188.55303 * 13 12 11 16 16 C 1.39173 * 119.82300 * 187.66796 * 15 13 12 17 17 C 1.38996 * 119.25200 * 180.02562 * 16 15 13 18 18 C 1.37871 * 118.56014 * 359.76969 * 17 16 15 19 19 C 1.39117 * 119.07033 * 0.28018 * 18 17 16 20 20 N 1.31321 * 121.20032 * 359.84761 * 19 18 17 21 21 C 1.50498 * 122.48034 * 180.34455 * 18 17 16 22 22 C 1.52784 * 110.48789 * 342.22319 * 21 18 17 23 23 C 1.53303 * 108.51398 * 51.11973 * 22 21 18 24 24 C 1.50355 * 118.62046 * 179.46916 * 17 16 15 25 25 C 1.46969 * 118.81050 * 55.48155 * 12 11 10 26 26 C 1.46966 * 120.58950 * 22.01897 * 9 7 2 27 27 H 0.97007 * 120.00143 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.60660 * 115.45814 * 10 9 7 29 29 H 1.09001 * 109.61139 * 354.95157 * 10 9 7 30 30 H 1.09003 * 109.60425 * 190.83371 * 11 10 9 31 31 H 1.09002 * 109.60771 * 70.32826 * 11 10 9 32 32 H 1.07996 * 120.37324 * 0.02562 * 16 15 13 33 33 H 1.07994 * 119.39953 * 179.82051 * 19 18 17 34 34 H 1.09002 * 109.30295 * 102.53705 * 21 18 17 35 35 H 1.09007 * 109.30102 * 221.91364 * 21 18 17 36 36 H 1.09005 * 109.63264 * 170.82778 * 22 21 18 37 37 H 1.09007 * 109.62893 * 291.40953 * 22 21 18 38 38 H 1.08997 * 109.64253 * 170.49163 * 23 22 21 39 39 H 1.08998 * 109.64025 * 49.86572 * 23 22 21 40 40 H 1.08996 * 109.30200 * 283.05882 * 24 17 16 41 41 H 1.08998 * 109.30132 * 42.44212 * 24 17 16 42 42 H 1.08999 * 109.61193 * 64.26402 * 25 12 11 43 43 H 1.09000 * 109.60934 * 184.77227 * 25 12 11 44 44 H 1.08996 * 109.60995 * 244.54328 * 26 9 7 45 45 H 1.09001 * 109.61118 * 5.05203 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0122 -1.2473 0.3999 9 7 1.4245 -2.3307 -0.5088 10 6 1.8951 -3.6636 -0.1067 11 6 2.2623 -4.4548 -1.3683 12 7 1.1514 -4.3549 -2.3251 13 6 0.5749 -5.4657 -2.8255 14 8 0.8635 -6.5561 -2.3736 15 6 -0.4108 -5.3572 -3.9264 16 6 -1.1216 -6.4827 -4.3324 17 6 -2.0430 -6.3676 -5.3668 18 6 -2.2241 -5.1333 -5.9538 19 6 -1.4779 -4.0516 -5.4972 20 7 -0.6114 -4.1870 -4.5198 21 6 -3.2031 -4.9071 -7.0742 22 6 -3.5910 -6.2354 -7.7217 23 6 -4.0264 -7.2062 -6.6180 24 6 -2.7942 -7.5951 -5.8021 25 6 0.6845 -3.0219 -2.7316 26 6 0.3136 -2.2307 -1.4658 27 1 -0.4851 0.8401 -0.0004 28 1 1.1039 -4.1832 0.4337 29 1 2.7732 -3.5644 0.5314 30 1 2.4286 -5.5004 -1.1087 31 1 3.1661 -4.0372 -1.8119 32 1 -0.9591 -7.4348 -3.8493 33 1 -1.6134 -3.0830 -5.9551 34 1 -4.0970 -4.4240 -6.6796 35 1 -2.7488 -4.2597 -7.8244 36 1 -4.4159 -6.0771 -8.4165 37 1 -2.7338 -6.6472 -8.2545 38 1 -4.4652 -8.0976 -7.0663 39 1 -4.7565 -6.7209 -5.9703 40 1 -2.1412 -8.2201 -6.4111 41 1 -3.1074 -8.1568 -4.9220 42 1 1.4785 -2.5046 -3.2701 43 1 -0.1914 -3.1210 -3.3727 44 1 -0.5901 -2.6483 -1.0222 45 1 0.1473 -1.1852 -1.7253 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949204799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:14 Heat of formation + Delta-G solvation = 36.121316 kcal Electronic energy + Delta-G solvation = -26531.028537 eV Core-core repulsion = 22935.279384 eV Total energy + Delta-G solvation = -3595.749153 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.06422 -39.24916 -37.01670 -36.70853 -33.84095 -33.00236 -31.85775 -30.95870 -29.98682 -29.60298 -26.96006 -24.80456 -24.23088 -23.20855 -22.93023 -22.57064 -21.08398 -19.81965 -18.82604 -17.49833 -16.66664 -16.16481 -15.94338 -15.31105 -15.24335 -14.95088 -14.74879 -14.59685 -14.22202 -13.97743 -13.72020 -13.51502 -13.28799 -13.15084 -13.11446 -12.83516 -12.46616 -12.38407 -12.15284 -11.66788 -11.40269 -11.26698 -11.05868 -10.89763 -10.76314 -10.63955 -10.44148 -10.17727 -10.03892 -9.89186 -9.74734 -9.55544 -9.00774 -8.57516 -8.49253 -8.11979 -6.71129 -5.80471 -3.14587 0.66090 1.10680 2.92084 3.38947 3.40082 3.47110 3.48333 3.88492 4.17854 4.30070 4.34148 4.51972 4.52301 4.62999 4.66341 4.89760 5.03388 5.12740 5.16247 5.30166 5.33894 5.37350 5.47624 5.51557 5.59693 5.60972 5.66682 5.74776 5.87765 5.93534 5.95321 6.00983 6.13417 6.19048 6.24383 6.45355 6.46561 6.58225 6.79517 6.85515 7.19739 7.34257 7.55885 7.71082 7.78685 8.01305 8.38310 8.54314 9.17413 9.83142 10.38162 11.27166 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.003353 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.500619 B = 8348.345274 C = 9371.472342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.000 4.000 3 Si 0.898 3.102 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.070 0.930 9 N -0.594 5.594 10 C 0.133 3.867 11 C 0.092 3.908 12 N -0.571 5.571 13 C 0.560 3.440 14 O -0.556 6.556 15 C 0.085 3.915 16 C -0.113 4.113 17 C -0.043 4.043 18 C -0.114 4.114 19 C 0.096 3.904 20 N -0.441 5.441 21 C -0.079 4.079 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.083 4.083 25 C 0.044 3.956 26 C 0.154 3.846 27 H 0.254 0.746 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.141 0.859 44 H 0.017 0.983 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.100 -12.522 -16.703 22.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.198 4.198 3 Si 0.728 3.272 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.088 0.912 9 N -0.317 5.317 10 C 0.006 3.994 11 C -0.032 4.032 12 N -0.300 5.300 13 C 0.346 3.654 14 O -0.436 6.436 15 C -0.051 4.051 16 C -0.134 4.134 17 C -0.051 4.051 18 C -0.116 4.116 19 C -0.064 4.064 20 N -0.152 5.152 21 C -0.116 4.116 22 C -0.158 4.158 23 C -0.158 4.158 24 C -0.120 4.120 25 C -0.079 4.079 26 C 0.027 3.973 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.163 0.837 33 H 0.179 0.821 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.157 0.843 44 H 0.035 0.965 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -7.517 -12.219 -16.085 21.553 hybrid contribution 0.052 0.415 -0.119 0.435 sum -7.465 -11.804 -16.204 21.392 Atomic orbital electron populations 1.70128 1.05321 1.25606 1.53084 1.24858 0.95093 0.98416 1.01457 0.86349 0.79330 0.83824 0.77736 1.21434 1.21916 1.20477 1.19246 0.96351 0.86284 1.36332 0.91238 1.44161 1.39004 1.00224 1.48270 1.21250 0.98050 0.87199 0.92898 1.22285 0.88233 1.01221 0.91451 1.47964 1.33315 1.06781 1.41951 1.17907 0.81079 0.84423 0.81990 1.90708 1.64346 1.27149 1.61402 1.21249 0.97317 0.89682 0.96819 1.22060 0.94872 1.00039 0.96427 1.19849 0.95657 0.95120 0.94428 1.20708 0.98740 0.93681 0.98498 1.23079 0.91878 0.98864 0.92601 1.67694 1.16888 1.23429 1.07143 1.20437 0.97660 0.98377 0.95153 1.21567 1.01463 0.95103 0.97685 1.21576 0.97138 0.99636 0.97452 1.20486 0.96469 0.94283 1.00762 1.24011 1.02647 0.80887 1.00351 1.21380 0.88813 1.00502 0.86561 0.93624 0.95929 0.91556 0.90048 0.91694 0.83657 0.82068 0.89974 0.90116 0.91132 0.91512 0.91116 0.91344 0.89928 0.90014 0.92509 0.84266 0.96511 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.04 11.28 55.49 0.63 -25.42 16 2 C 0.00 0.01 4.76 -17.44 -0.08 -0.08 16 3 Si 0.90 21.64 29.62 -169.99 -5.04 16.60 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -7.00 9.59 -15.06 -0.14 -7.14 16 8 H 0.07 1.88 7.91 -52.49 -0.42 1.47 16 9 N -0.59 -15.28 2.99 -171.77 -0.51 -15.80 16 10 C 0.13 2.95 6.67 -3.60 -0.02 2.93 16 11 C 0.09 1.82 6.60 -3.60 -0.02 1.80 16 12 N -0.57 -11.56 2.94 -173.21 -0.51 -12.07 16 13 C 0.56 10.92 7.65 -12.18 -0.09 10.83 16 14 O -0.56 -11.71 15.78 5.35 0.08 -11.62 16 15 C 0.09 1.40 6.60 -83.05 -0.55 0.85 16 16 C -0.11 -1.54 9.26 -38.95 -0.36 -1.91 16 17 C -0.04 -0.46 5.74 -104.64 -0.60 -1.06 16 18 C -0.11 -1.16 5.75 -104.53 -0.60 -1.76 16 19 C 0.10 1.14 10.79 -17.44 -0.19 0.95 16 20 N -0.44 -6.80 6.09 -9.73 -0.06 -6.85 16 21 C -0.08 -0.55 5.71 -28.09 -0.16 -0.71 16 22 C -0.12 -0.71 5.97 -26.69 -0.16 -0.87 16 23 C -0.12 -0.75 5.98 -26.67 -0.16 -0.91 16 24 C -0.08 -0.64 5.71 -28.14 -0.16 -0.80 16 25 C 0.04 0.91 6.13 -3.37 -0.02 0.89 16 26 C 0.15 3.77 5.64 -3.37 -0.02 3.76 16 27 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 1.38 7.90 -51.93 -0.41 0.97 16 30 H 0.08 1.54 7.00 -51.93 -0.36 1.18 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.15 1.91 7.66 -52.49 -0.40 1.51 16 33 H 0.16 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.47 8.13 -51.92 -0.42 0.04 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.14 2.66 3.90 -88.80 -0.35 2.31 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.10 2.69 5.77 -51.93 -0.30 2.39 16 LS Contribution 352.70 15.07 5.32 5.32 Total: -1.00 -32.58 352.70 -10.30 -42.88 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.86 Total: 0.20 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -3.35 Total: 6.76 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.46 Total: -60.14 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.08 Total: -11.62 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.04 Total: 16.60 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.58 -10.30 -42.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949204799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.004 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds