Wall clock time and date at job start Tue Mar 31 2020 11:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86809 * 119.99996 * 2 1 4 4 H 1.48497 * 109.47097 * 269.99953 * 3 2 1 5 5 H 1.48505 * 109.46802 * 30.00230 * 3 2 1 6 6 H 1.48502 * 109.46957 * 150.00046 * 3 2 1 7 7 C 1.38808 * 120.00393 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00600 * 205.35372 * 7 2 1 9 9 N 1.36942 * 120.00085 * 25.35089 * 7 2 1 10 10 C 1.46957 * 120.59674 * 202.04204 * 9 7 2 11 11 C 1.53372 * 108.63345 * 235.20092 * 10 9 7 12 12 N 1.46953 * 108.63640 * 310.57369 * 11 10 9 13 13 C 1.34781 * 120.59819 * 235.20007 * 12 11 10 14 14 O 1.21513 * 119.99417 * 8.55898 * 13 12 11 15 15 C 1.48169 * 120.00324 * 188.55303 * 13 12 11 16 16 C 1.39173 * 119.82300 * 187.66796 * 15 13 12 17 17 C 1.38996 * 119.25200 * 180.02562 * 16 15 13 18 18 C 1.37871 * 118.56014 * 359.76969 * 17 16 15 19 19 C 1.39117 * 119.07033 * 0.28018 * 18 17 16 20 20 N 1.31321 * 121.20032 * 359.84761 * 19 18 17 21 21 C 1.50498 * 122.48034 * 180.34455 * 18 17 16 22 22 C 1.52784 * 110.48789 * 342.22319 * 21 18 17 23 23 C 1.53303 * 108.51398 * 51.11973 * 22 21 18 24 24 C 1.50355 * 118.62046 * 179.46916 * 17 16 15 25 25 C 1.46969 * 118.81050 * 55.48155 * 12 11 10 26 26 C 1.46966 * 120.58950 * 22.01897 * 9 7 2 27 27 H 0.97007 * 120.00143 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.60660 * 115.45814 * 10 9 7 29 29 H 1.09001 * 109.61139 * 354.95157 * 10 9 7 30 30 H 1.09003 * 109.60425 * 190.83371 * 11 10 9 31 31 H 1.09002 * 109.60771 * 70.32826 * 11 10 9 32 32 H 1.07996 * 120.37324 * 0.02562 * 16 15 13 33 33 H 1.07994 * 119.39953 * 179.82051 * 19 18 17 34 34 H 1.09002 * 109.30295 * 102.53705 * 21 18 17 35 35 H 1.09007 * 109.30102 * 221.91364 * 21 18 17 36 36 H 1.09005 * 109.63264 * 170.82778 * 22 21 18 37 37 H 1.09007 * 109.62893 * 291.40953 * 22 21 18 38 38 H 1.08997 * 109.64253 * 170.49163 * 23 22 21 39 39 H 1.08998 * 109.64025 * 49.86572 * 23 22 21 40 40 H 1.08996 * 109.30200 * 283.05882 * 24 17 16 41 41 H 1.08998 * 109.30132 * 42.44212 * 24 17 16 42 42 H 1.08999 * 109.61193 * 64.26402 * 25 12 11 43 43 H 1.09000 * 109.60934 * 184.77227 * 25 12 11 44 44 H 1.08996 * 109.60995 * 244.54328 * 26 9 7 45 45 H 1.09001 * 109.61118 * 5.05203 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0122 -1.2473 0.3999 9 7 1.4245 -2.3307 -0.5088 10 6 1.8951 -3.6636 -0.1067 11 6 2.2623 -4.4548 -1.3683 12 7 1.1514 -4.3549 -2.3251 13 6 0.5749 -5.4657 -2.8255 14 8 0.8635 -6.5561 -2.3736 15 6 -0.4108 -5.3572 -3.9264 16 6 -1.1216 -6.4827 -4.3324 17 6 -2.0430 -6.3676 -5.3668 18 6 -2.2241 -5.1333 -5.9538 19 6 -1.4779 -4.0516 -5.4972 20 7 -0.6114 -4.1870 -4.5198 21 6 -3.2031 -4.9071 -7.0742 22 6 -3.5910 -6.2354 -7.7217 23 6 -4.0264 -7.2062 -6.6180 24 6 -2.7942 -7.5951 -5.8021 25 6 0.6845 -3.0219 -2.7316 26 6 0.3136 -2.2307 -1.4658 27 1 -0.4851 0.8401 -0.0004 28 1 1.1039 -4.1832 0.4337 29 1 2.7732 -3.5644 0.5314 30 1 2.4286 -5.5004 -1.1087 31 1 3.1661 -4.0372 -1.8119 32 1 -0.9591 -7.4348 -3.8493 33 1 -1.6134 -3.0830 -5.9551 34 1 -4.0970 -4.4240 -6.6796 35 1 -2.7488 -4.2597 -7.8244 36 1 -4.4159 -6.0771 -8.4165 37 1 -2.7338 -6.6472 -8.2545 38 1 -4.4652 -8.0976 -7.0663 39 1 -4.7565 -6.7209 -5.9703 40 1 -2.1412 -8.2201 -6.4111 41 1 -3.1074 -8.1568 -4.9220 42 1 1.4785 -2.5046 -3.2701 43 1 -0.1914 -3.1210 -3.3727 44 1 -0.5901 -2.6483 -1.0222 45 1 0.1473 -1.1852 -1.7253 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949204799.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:13 Heat of formation + Delta-G solvation = 17.602703 kcal Electronic energy + Delta-G solvation = -26531.831564 eV Core-core repulsion = 22935.279384 eV Total energy + Delta-G solvation = -3596.552180 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.13714 -40.62356 -38.50263 -37.80265 -35.65475 -33.85480 -33.41632 -32.30911 -31.62605 -30.54452 -28.75194 -26.11082 -25.33142 -24.60290 -24.28789 -23.67797 -22.47716 -21.02179 -20.16804 -18.99111 -18.10379 -17.60464 -17.01933 -16.73209 -16.57450 -16.44332 -16.00130 -15.64878 -15.51095 -15.26288 -15.22495 -14.78780 -14.72906 -14.65228 -14.12779 -13.90512 -13.64789 -13.38071 -13.34231 -13.10318 -12.94193 -12.65441 -12.49286 -12.24700 -12.08908 -12.05558 -11.73757 -11.72324 -11.53068 -11.47871 -11.32429 -10.59214 -10.49177 -10.04608 -9.84210 -9.78174 -8.74701 -7.90786 -5.29680 -0.41269 0.16065 1.47867 1.50347 1.58955 1.61849 1.94095 2.51149 2.73895 3.02633 3.21631 3.50192 3.60316 3.64735 3.79034 3.84974 3.95683 4.06773 4.22387 4.25292 4.35510 4.41642 4.45408 4.51405 4.60671 4.65079 4.70253 4.73399 4.75201 4.81056 4.93986 4.98341 5.04690 5.05200 5.08240 5.20486 5.28464 5.35644 5.45163 5.48692 5.50097 5.57082 5.63672 5.81299 6.30124 6.38154 6.67186 7.04633 7.07214 7.77606 8.30314 9.15137 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020248 B = 0.003353 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.500619 B = 8348.345274 C = 9371.472342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.049 4.049 3 Si 0.967 3.033 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.268 4.268 8 H 0.073 0.927 9 N -0.611 5.611 10 C 0.133 3.867 11 C 0.101 3.899 12 N -0.582 5.582 13 C 0.558 3.442 14 O -0.579 6.579 15 C 0.050 3.950 16 C -0.114 4.114 17 C -0.043 4.043 18 C -0.098 4.098 19 C 0.091 3.909 20 N -0.468 5.468 21 C -0.080 4.080 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.084 4.084 25 C 0.063 3.937 26 C 0.163 3.837 27 H 0.252 0.748 28 H 0.007 0.993 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.144 0.856 33 H 0.190 0.810 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.161 0.839 44 H -0.012 1.012 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.960 -12.866 -19.385 24.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.245 4.245 3 Si 0.795 3.205 4 H -0.209 1.209 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.398 4.398 8 H 0.090 0.910 9 N -0.334 5.334 10 C 0.007 3.993 11 C -0.023 4.023 12 N -0.312 5.312 13 C 0.346 3.654 14 O -0.460 6.460 15 C -0.084 4.084 16 C -0.135 4.135 17 C -0.050 4.050 18 C -0.100 4.100 19 C -0.070 4.070 20 N -0.179 5.179 21 C -0.117 4.117 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.121 4.121 25 C -0.060 4.060 26 C 0.037 3.963 27 H 0.061 0.939 28 H 0.025 0.975 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.161 0.839 33 H 0.207 0.793 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.176 0.824 44 H 0.006 0.994 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.363 -12.596 -18.773 24.104 hybrid contribution 0.214 0.436 0.658 0.817 sum -8.149 -12.160 -18.115 23.290 Atomic orbital electron populations 1.70265 1.06793 1.26158 1.54346 1.25650 0.95845 1.01473 1.01488 0.85271 0.78144 0.79373 0.77690 1.20944 1.22238 1.19482 1.19575 0.96585 0.87276 1.36319 0.90971 1.44436 1.39151 1.01088 1.48754 1.21338 0.97817 0.85931 0.94254 1.22141 0.88593 1.01206 0.90382 1.48018 1.33743 1.06917 1.42472 1.18415 0.81007 0.83675 0.82300 1.90670 1.65207 1.27702 1.62416 1.20852 0.98733 0.91300 0.97501 1.22145 0.95165 0.99054 0.97172 1.20235 0.94779 0.96803 0.93205 1.21142 0.97885 0.92670 0.98294 1.23602 0.90950 1.00709 0.91734 1.67291 1.18564 1.23329 1.08764 1.20593 0.97156 0.99657 0.94286 1.21595 1.02194 0.94164 0.97719 1.21600 0.96120 1.00584 0.97322 1.20598 0.97124 0.92913 1.01438 1.23834 1.03508 0.80509 0.98136 1.21194 0.87717 0.99473 0.87943 0.93875 0.97475 0.90418 0.89155 0.90821 0.83870 0.79301 0.88712 0.88296 0.89180 0.91528 0.89333 0.91640 0.88777 0.89668 0.92821 0.82373 0.99437 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.42 11.28 21.65 0.24 -55.17 16 2 C -0.05 -2.76 4.76 84.86 0.40 -2.35 16 3 Si 0.97 44.95 29.62 68.60 2.03 46.98 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.27 -15.06 9.59 84.03 0.81 -14.26 16 8 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 9 N -0.61 -32.35 2.99 -697.36 -2.08 -34.43 16 10 C 0.13 6.05 6.67 86.42 0.58 6.63 16 11 C 0.10 4.05 6.60 86.42 0.57 4.62 16 12 N -0.58 -24.13 2.94 -820.21 -2.41 -26.54 16 13 C 0.56 22.27 7.65 86.88 0.67 22.94 16 14 O -0.58 -24.91 15.78 -3.76 -0.06 -24.97 16 15 C 0.05 1.67 6.60 41.87 0.28 1.94 16 16 C -0.11 -3.08 9.26 22.68 0.21 -2.87 16 17 C -0.04 -0.84 5.74 -19.88 -0.11 -0.96 16 18 C -0.10 -1.74 5.75 -19.80 -0.11 -1.85 16 19 C 0.09 1.98 10.79 84.98 0.92 2.90 16 20 N -0.47 -14.26 6.09 -184.71 -1.13 -15.39 16 21 C -0.08 -0.79 5.71 29.71 0.17 -0.62 16 22 C -0.12 -0.92 5.97 30.62 0.18 -0.73 16 23 C -0.12 -1.05 5.98 30.64 0.18 -0.87 16 24 C -0.08 -1.08 5.71 29.68 0.17 -0.91 16 25 C 0.06 2.67 6.13 86.56 0.53 3.20 16 26 C 0.16 8.34 5.64 86.56 0.49 8.83 16 27 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 28 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 29 H 0.08 3.28 7.90 -2.39 -0.02 3.26 16 30 H 0.09 3.45 7.00 -2.39 -0.02 3.44 16 31 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.14 3.80 7.66 -2.91 -0.02 3.78 16 33 H 0.19 2.92 8.06 -2.91 -0.02 2.89 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.79 16 35 H 0.10 0.70 8.13 -2.38 -0.02 0.68 16 36 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.07 0.55 8.10 -2.38 -0.02 0.53 16 38 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.06 0.64 8.10 -2.39 -0.02 0.62 16 40 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.16 6.15 3.90 -75.19 -0.29 5.86 16 44 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 45 H 0.08 4.27 5.77 -2.39 -0.01 4.25 16 Total: -1.00 -72.40 352.70 3.22 -69.18 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.71 Total: 14.71 kcal Atomic # 6 Polarization: 19.71 SS G_CDS: 5.92 Total: 25.63 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -5.38 Total: -131.53 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.06 Total: -24.97 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -72.40 3.22 -69.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949204799.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.779 kcal (2) G-P(sol) polarization free energy of solvation -72.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds