Wall clock time and date at job start Tue Mar 31 2020 11:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.64353 * 328.13430 * 10 9 7 12 12 C 1.55160 * 110.72259 * 204.99536 * 10 9 7 13 13 C 1.54903 * 101.58514 * 206.13520 * 12 10 9 14 14 N 1.47423 * 104.83345 * 37.00430 * 13 12 10 15 15 C 1.34773 * 125.64683 * 155.91462 * 14 13 12 16 16 O 1.21514 * 120.00178 * 179.97438 * 15 14 13 17 17 C 1.48174 * 120.00366 * 359.97438 * 15 14 13 18 18 C 1.39167 * 119.82479 * 179.72466 * 17 15 14 19 19 C 1.38997 * 119.24687 * 179.73962 * 18 17 15 20 20 C 1.37858 * 118.56799 * 0.30483 * 19 18 17 21 21 C 1.39122 * 119.06844 * 0.06865 * 20 19 18 22 22 N 1.31327 * 121.19643 * 359.75801 * 21 20 19 23 23 C 1.50503 * 122.48772 * 180.42732 * 20 19 18 24 24 C 1.52782 * 110.48730 * 342.19555 * 23 20 19 25 25 C 1.53303 * 108.52947 * 51.08678 * 24 23 20 26 26 C 1.50365 * 118.61422 * 179.97438 * 19 18 17 27 27 C 1.47020 * 108.70559 * 335.87846 * 14 13 12 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.09000 * 111.00005 * 324.21008 * 12 10 9 31 31 H 1.09004 * 111.00266 * 88.02029 * 12 10 9 32 32 H 1.08994 * 110.37064 * 155.84891 * 13 12 10 33 33 H 1.09009 * 110.36401 * 278.06126 * 13 12 10 34 34 H 1.08007 * 120.37334 * 359.96377 * 18 17 15 35 35 H 1.07997 * 119.40548 * 179.74330 * 21 20 19 36 36 H 1.08998 * 109.29908 * 102.50903 * 23 20 19 37 37 H 1.09005 * 109.29834 * 221.88430 * 23 20 19 38 38 H 1.09000 * 109.62650 * 291.37177 * 24 23 20 39 39 H 1.09007 * 109.78354 * 170.89874 * 24 23 20 40 40 H 1.09010 * 109.64059 * 170.50268 * 25 24 23 41 41 H 1.09000 * 109.64372 * 49.88363 * 25 24 23 42 42 H 1.08995 * 109.30577 * 282.95492 * 26 19 18 43 43 H 1.08998 * 109.30137 * 42.55405 * 26 19 18 44 44 H 1.08999 * 109.88183 * 241.64150 * 27 14 13 45 45 H 1.08992 * 109.88824 * 120.47488 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0008 -3.5562 -0.5393 12 6 1.1938 -4.7896 -0.6160 13 6 1.7908 -6.0434 0.0705 14 7 2.1093 -5.6070 1.4422 15 6 2.2115 -6.4116 2.5186 16 8 2.4805 -5.9405 3.6059 17 6 1.9958 -7.8706 2.3762 18 6 2.1079 -8.6987 3.4891 19 6 1.8978 -10.0649 3.3429 20 6 1.5901 -10.5544 2.0914 21 6 1.5022 -9.6688 1.0220 22 7 1.7020 -8.3813 1.1869 23 6 1.3363 -12.0155 1.8348 24 6 1.8861 -12.8631 2.9809 25 6 1.3551 -12.2977 4.3032 26 6 2.0232 -10.9464 4.5545 27 6 2.2977 -4.1489 1.4413 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 0.1429 -4.6644 -0.3552 31 1 1.3229 -4.8367 -1.6973 32 1 1.0585 -6.8504 0.0895 33 1 2.6950 -6.3647 -0.4467 34 1 2.3519 -8.2839 4.4560 35 1 1.2656 -10.0469 0.0385 36 1 0.2632 -12.1842 1.7444 37 1 1.8234 -12.3078 0.9045 38 1 2.9753 -12.8225 2.9764 39 1 1.5577 -13.8962 2.8662 40 1 1.5951 -12.9821 5.1170 41 1 0.2750 -12.1658 4.2380 42 1 3.0783 -11.1024 4.7791 43 1 1.5416 -10.4620 5.4039 44 1 3.3141 -3.9063 1.7516 45 1 1.5805 -3.6820 2.1162 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969273753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:07 Heat of formation + Delta-G solvation = 8.888568 kcal Electronic energy + Delta-G solvation = -25704.126702 eV Core-core repulsion = 22107.196648 eV Total energy + Delta-G solvation = -3596.930053 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.15763 -39.47204 -37.41407 -36.98809 -34.38003 -33.16729 -31.96929 -31.18408 -29.84303 -29.39359 -27.43612 -24.90519 -24.37144 -23.48575 -23.01832 -22.44810 -20.81358 -20.04317 -19.16781 -17.59828 -17.38286 -16.63662 -16.13975 -15.85610 -15.54530 -15.19814 -14.83875 -14.53282 -14.36778 -14.35173 -13.81343 -13.64459 -13.59819 -13.20682 -13.01344 -12.80086 -12.75747 -12.40676 -12.29167 -11.88170 -11.51419 -11.39155 -11.25738 -11.17385 -11.01783 -10.67840 -10.61724 -10.30307 -10.06328 -9.99335 -9.71423 -9.38218 -9.19273 -9.17308 -8.95644 -8.27473 -7.11737 -6.13356 -3.14980 0.48559 0.95460 2.75199 3.12500 3.52644 3.57468 3.70991 3.72452 3.98605 4.15072 4.18767 4.39803 4.47907 4.49617 4.66179 4.71252 4.88871 4.98579 5.03018 5.07301 5.17381 5.20647 5.33870 5.36319 5.38892 5.45872 5.48978 5.51474 5.62337 5.66980 5.70562 5.78662 5.81780 5.89255 5.99077 6.05237 6.14735 6.31235 6.36907 6.41394 6.55955 6.70019 6.85015 7.54135 7.77985 7.79221 8.31755 8.72518 9.16925 10.03461 10.16986 11.34646 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.036416 B = 0.002438 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.711451 B =11480.602061 C =11939.113808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.042 4.042 3 Si 1.084 2.916 4 H -0.294 1.294 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.338 4.338 8 H 0.067 0.933 9 N -0.724 5.724 10 C 0.177 3.823 11 H 0.069 0.931 12 C -0.147 4.147 13 C 0.107 3.893 14 N -0.590 5.590 15 C 0.574 3.426 16 O -0.542 6.542 17 C 0.084 3.916 18 C -0.112 4.112 19 C -0.042 4.042 20 C -0.113 4.113 21 C 0.098 3.902 22 N -0.452 5.452 23 C -0.078 4.078 24 C -0.121 4.121 25 C -0.121 4.121 26 C -0.084 4.084 27 C 0.082 3.918 28 H 0.256 0.744 29 H 0.370 0.630 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.147 0.853 35 H 0.161 0.839 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.977 -29.715 3.697 30.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.240 4.240 3 Si 0.914 3.086 4 H -0.222 1.222 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.469 4.469 8 H 0.085 0.915 9 N -0.365 5.365 10 C 0.065 3.935 11 H 0.087 0.913 12 C -0.186 4.186 13 C -0.016 4.016 14 N -0.322 5.322 15 C 0.361 3.639 16 O -0.420 6.420 17 C -0.052 4.052 18 C -0.133 4.133 19 C -0.050 4.050 20 C -0.116 4.116 21 C -0.063 4.063 22 N -0.163 5.163 23 C -0.116 4.116 24 C -0.159 4.159 25 C -0.158 4.158 26 C -0.121 4.121 27 C -0.043 4.043 28 H 0.067 0.933 29 H 0.204 0.796 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.164 0.836 35 H 0.178 0.822 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.146 -27.137 3.610 27.556 hybrid contribution 0.006 -2.181 0.733 2.301 sum 3.152 -29.318 4.343 29.805 Atomic orbital electron populations 1.70856 1.06078 1.28531 1.53128 1.25823 0.97031 1.01119 1.00033 0.83188 0.73878 0.75193 0.76327 1.22212 1.22055 1.21357 1.20107 0.92146 0.85621 1.49011 0.91465 1.42395 1.04860 1.00477 1.88770 1.21156 0.95370 0.85861 0.91144 0.91268 1.23183 1.00362 0.94839 1.00244 1.22593 1.00678 0.97512 0.80803 1.48377 1.66560 1.08786 1.08448 1.17546 0.78458 0.84419 0.83520 1.90776 1.49947 1.75462 1.25822 1.21134 0.99818 0.94553 0.89731 1.22109 0.98033 0.92746 1.00383 1.19863 0.96515 0.93602 0.95026 1.20741 0.99852 0.97416 0.93558 1.22920 0.96306 0.88173 0.98927 1.67821 1.10171 1.14331 1.23990 1.20432 1.01976 0.89684 0.99491 1.21567 1.01047 0.98975 0.94295 1.21580 1.00596 0.95845 0.97788 1.20507 1.02135 0.94725 0.94753 1.23262 1.01365 0.77365 1.02342 0.93300 0.79643 0.91020 0.90138 0.88196 0.91760 0.83556 0.82194 0.90019 0.90099 0.91474 0.91060 0.91008 0.91385 0.89803 0.89934 0.92157 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.22 13.70 55.49 0.76 -28.46 16 2 C -0.04 -1.23 5.50 -17.43 -0.10 -1.33 16 3 Si 1.08 26.17 29.92 -169.99 -5.09 21.09 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.34 -9.51 9.96 -15.06 -0.15 -9.66 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.72 -18.18 5.15 -51.65 -0.27 -18.44 16 10 C 0.18 3.59 3.61 -66.10 -0.24 3.35 16 11 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 12 C -0.15 -2.41 6.71 -24.58 -0.17 -2.58 16 13 C 0.11 1.61 5.94 -2.53 -0.02 1.59 16 14 N -0.59 -10.58 3.33 -171.52 -0.57 -11.15 16 15 C 0.57 10.44 7.84 -12.18 -0.10 10.34 16 16 O -0.54 -11.39 16.66 5.35 0.09 -11.30 16 17 C 0.08 1.23 6.72 -83.05 -0.56 0.67 16 18 C -0.11 -1.38 9.26 -38.96 -0.36 -1.74 16 19 C -0.04 -0.40 5.74 -104.64 -0.60 -1.00 16 20 C -0.11 -0.96 5.75 -104.53 -0.60 -1.56 16 21 C 0.10 0.94 10.79 -17.44 -0.19 0.75 16 22 N -0.45 -5.80 6.61 -9.73 -0.06 -5.86 16 23 C -0.08 -0.42 5.71 -28.09 -0.16 -0.58 16 24 C -0.12 -0.57 5.97 -26.69 -0.16 -0.73 16 25 C -0.12 -0.62 5.98 -26.67 -0.16 -0.78 16 26 C -0.08 -0.57 5.71 -28.14 -0.16 -0.73 16 27 C 0.08 1.66 6.62 -3.06 -0.02 1.64 16 28 H 0.26 7.81 6.77 -40.82 -0.28 7.53 16 29 H 0.37 9.56 6.59 -40.82 -0.27 9.30 16 30 H 0.07 1.22 8.01 -51.93 -0.42 0.80 16 31 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.10 1.41 5.89 -51.93 -0.31 1.10 16 33 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 34 H 0.15 1.79 7.64 -52.48 -0.40 1.39 16 35 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.34 8.13 -51.93 -0.42 -0.08 16 38 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.07 0.29 8.14 -51.92 -0.42 -0.14 16 41 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.07 1.64 8.03 -51.93 -0.42 1.23 16 LS Contribution 360.86 15.07 5.44 5.44 Total: -1.00 -34.16 360.86 -10.21 -44.37 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.78 Total: 6.67 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -3.73 Total: -2.35 kcal Atomic # 7 Polarization: -63.77 SS G_CDS: -0.14 Total: -63.91 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 26.17 SS G_CDS: -5.09 Total: 21.09 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.16 -10.21 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969273753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.259 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds