Wall clock time and date at job start Tue Mar 31 2020 11:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09006 * 110.64353 * 328.13430 * 10 9 7 12 12 C 1.55160 * 110.72259 * 204.99536 * 10 9 7 13 13 C 1.54903 * 101.58514 * 206.13520 * 12 10 9 14 14 N 1.47423 * 104.83345 * 37.00430 * 13 12 10 15 15 C 1.34773 * 125.64683 * 155.91462 * 14 13 12 16 16 O 1.21514 * 120.00178 * 179.97438 * 15 14 13 17 17 C 1.48174 * 120.00366 * 359.97438 * 15 14 13 18 18 C 1.39167 * 119.82479 * 179.72466 * 17 15 14 19 19 C 1.38997 * 119.24687 * 179.73962 * 18 17 15 20 20 C 1.37858 * 118.56799 * 0.30483 * 19 18 17 21 21 C 1.39122 * 119.06844 * 0.06865 * 20 19 18 22 22 N 1.31327 * 121.19643 * 359.75801 * 21 20 19 23 23 C 1.50503 * 122.48772 * 180.42732 * 20 19 18 24 24 C 1.52782 * 110.48730 * 342.19555 * 23 20 19 25 25 C 1.53303 * 108.52947 * 51.08678 * 24 23 20 26 26 C 1.50365 * 118.61422 * 179.97438 * 19 18 17 27 27 C 1.47020 * 108.70559 * 335.87846 * 14 13 12 28 28 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 30 30 H 1.09000 * 111.00005 * 324.21008 * 12 10 9 31 31 H 1.09004 * 111.00266 * 88.02029 * 12 10 9 32 32 H 1.08994 * 110.37064 * 155.84891 * 13 12 10 33 33 H 1.09009 * 110.36401 * 278.06126 * 13 12 10 34 34 H 1.08007 * 120.37334 * 359.96377 * 18 17 15 35 35 H 1.07997 * 119.40548 * 179.74330 * 21 20 19 36 36 H 1.08998 * 109.29908 * 102.50903 * 23 20 19 37 37 H 1.09005 * 109.29834 * 221.88430 * 23 20 19 38 38 H 1.09000 * 109.62650 * 291.37177 * 24 23 20 39 39 H 1.09007 * 109.78354 * 170.89874 * 24 23 20 40 40 H 1.09010 * 109.64059 * 170.50268 * 25 24 23 41 41 H 1.09000 * 109.64372 * 49.88363 * 25 24 23 42 42 H 1.08995 * 109.30577 * 282.95492 * 26 19 18 43 43 H 1.08998 * 109.30137 * 42.55405 * 26 19 18 44 44 H 1.08999 * 109.88183 * 241.64150 * 27 14 13 45 45 H 1.08992 * 109.88824 * 120.47488 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0008 -3.5562 -0.5393 12 6 1.1938 -4.7896 -0.6160 13 6 1.7908 -6.0434 0.0705 14 7 2.1093 -5.6070 1.4422 15 6 2.2115 -6.4116 2.5186 16 8 2.4805 -5.9405 3.6059 17 6 1.9958 -7.8706 2.3762 18 6 2.1079 -8.6987 3.4891 19 6 1.8978 -10.0649 3.3429 20 6 1.5901 -10.5544 2.0914 21 6 1.5022 -9.6688 1.0220 22 7 1.7020 -8.3813 1.1869 23 6 1.3363 -12.0155 1.8348 24 6 1.8861 -12.8631 2.9809 25 6 1.3551 -12.2977 4.3032 26 6 2.0232 -10.9464 4.5545 27 6 2.2977 -4.1489 1.4413 28 1 -0.4850 -0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0016 30 1 0.1429 -4.6644 -0.3552 31 1 1.3229 -4.8367 -1.6973 32 1 1.0585 -6.8504 0.0895 33 1 2.6950 -6.3647 -0.4467 34 1 2.3519 -8.2839 4.4560 35 1 1.2656 -10.0469 0.0385 36 1 0.2632 -12.1842 1.7444 37 1 1.8234 -12.3078 0.9045 38 1 2.9753 -12.8225 2.9764 39 1 1.5577 -13.8962 2.8662 40 1 1.5951 -12.9821 5.1170 41 1 0.2750 -12.1658 4.2380 42 1 3.0783 -11.1024 4.7791 43 1 1.5416 -10.4620 5.4039 44 1 3.3141 -3.9063 1.7516 45 1 1.5805 -3.6820 2.1162 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969273753.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:06 Heat of formation + Delta-G solvation = -12.245291 kcal Electronic energy + Delta-G solvation = -25705.043134 eV Core-core repulsion = 22107.196648 eV Total energy + Delta-G solvation = -3597.846486 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.07978 -40.75035 -38.86834 -37.76080 -36.30219 -33.87878 -33.50376 -32.21192 -31.07910 -30.54757 -29.04622 -26.25503 -25.21906 -24.98243 -23.76379 -23.69303 -22.01901 -21.33288 -20.16256 -19.53178 -18.63728 -17.78664 -17.27026 -17.02696 -16.52837 -16.42395 -16.13166 -15.77897 -15.65201 -15.42846 -14.93562 -14.78741 -14.72002 -14.31438 -14.24006 -13.76715 -13.66021 -13.50053 -13.26171 -13.01428 -12.98801 -12.85140 -12.55810 -12.45824 -11.94071 -11.87101 -11.76841 -11.67518 -11.56726 -11.40831 -11.25941 -11.03857 -10.51897 -10.33684 -10.02193 -9.69832 -9.23748 -8.43565 -5.39642 -0.45600 0.15663 1.56202 1.57501 1.67724 1.77228 1.82407 2.68374 2.72969 2.97283 3.33430 3.47767 3.55296 3.61193 3.76505 3.77959 3.82178 3.86671 4.00227 4.03475 4.20639 4.29041 4.32842 4.39091 4.42204 4.56031 4.61819 4.64834 4.70981 4.75258 4.89601 4.91064 4.95809 5.01402 5.03881 5.07007 5.15427 5.23952 5.25575 5.30610 5.36961 5.45700 5.57081 5.66498 6.35419 6.45318 6.62931 6.95315 7.02271 7.91390 8.02367 9.07857 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.036416 B = 0.002438 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.711451 B =11480.602061 C =11939.113808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.102 4.102 3 Si 1.130 2.870 4 H -0.289 1.289 5 H -0.270 1.270 6 H -0.291 1.291 7 C -0.336 4.336 8 H 0.069 0.931 9 N -0.736 5.736 10 C 0.172 3.828 11 H 0.073 0.927 12 C -0.134 4.134 13 C 0.117 3.883 14 N -0.594 5.594 15 C 0.567 3.433 16 O -0.585 6.585 17 C 0.054 3.946 18 C -0.119 4.119 19 C -0.045 4.045 20 C -0.098 4.098 21 C 0.097 3.903 22 N -0.466 5.466 23 C -0.078 4.078 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.086 4.086 27 C 0.093 3.907 28 H 0.245 0.755 29 H 0.363 0.637 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.135 0.865 35 H 0.198 0.802 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.064 0.936 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.048 0.952 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.465 -33.302 2.415 33.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.294 4.294 3 Si 0.955 3.045 4 H -0.216 1.216 5 H -0.195 1.195 6 H -0.217 1.217 7 C -0.468 4.468 8 H 0.087 0.913 9 N -0.377 5.377 10 C 0.062 3.938 11 H 0.091 0.909 12 C -0.173 4.173 13 C -0.004 4.004 14 N -0.325 5.325 15 C 0.356 3.644 16 O -0.467 6.467 17 C -0.080 4.080 18 C -0.141 4.141 19 C -0.053 4.053 20 C -0.100 4.100 21 C -0.065 4.065 22 N -0.177 5.177 23 C -0.116 4.116 24 C -0.158 4.158 25 C -0.156 4.156 26 C -0.123 4.123 27 C -0.033 4.033 28 H 0.055 0.945 29 H 0.195 0.805 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.101 0.899 34 H 0.153 0.847 35 H 0.214 0.786 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.083 0.917 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.067 0.933 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.659 -30.789 2.316 31.092 hybrid contribution -0.137 -1.287 1.167 1.743 sum 3.523 -32.076 3.483 32.457 Atomic orbital electron populations 1.70966 1.07189 1.27979 1.55917 1.27247 0.97123 1.04765 1.00216 0.82595 0.73716 0.71496 0.76714 1.21573 1.19463 1.21699 1.20440 0.92462 0.86818 1.47035 0.91253 1.42546 1.04699 1.01447 1.89001 1.21333 0.95996 0.85315 0.91195 0.90883 1.23123 0.99132 0.93415 1.01585 1.22716 1.01826 0.96970 0.78927 1.48444 1.66717 1.07504 1.09860 1.18231 0.77250 0.86169 0.82737 1.90728 1.51838 1.76731 1.27354 1.20589 1.03619 0.92366 0.91468 1.22141 0.98445 0.94107 0.99370 1.20182 0.95792 0.92526 0.96764 1.21199 0.96920 0.99291 0.92556 1.23572 0.95038 0.87028 1.00835 1.67668 1.10858 1.16194 1.23004 1.20584 1.03183 0.87068 1.00716 1.21597 1.00895 0.99835 0.93506 1.21600 1.00296 0.94860 0.98846 1.20598 1.02882 0.95306 0.93492 1.22842 0.99547 0.79414 1.01504 0.94485 0.80479 0.91757 0.87664 0.86578 0.89908 0.84690 0.78575 0.88484 0.88008 0.91725 0.89151 0.89589 0.91497 0.89093 0.90019 0.93325 0.94533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.91 13.70 21.65 0.30 -61.62 16 2 C -0.10 -6.04 5.50 84.86 0.47 -5.57 16 3 Si 1.13 53.07 29.92 68.60 2.05 55.12 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 6 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 7 C -0.34 -19.22 9.96 84.03 0.84 -18.38 16 8 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 9 N -0.74 -37.93 5.15 -317.33 -1.63 -39.56 16 10 C 0.17 7.08 3.61 46.18 0.17 7.24 16 11 H 0.07 2.96 8.09 -2.38 -0.02 2.94 16 12 C -0.13 -4.26 6.71 31.98 0.21 -4.05 16 13 C 0.12 3.38 5.94 86.85 0.52 3.89 16 14 N -0.59 -21.84 3.33 -814.85 -2.71 -24.55 16 15 C 0.57 21.54 7.84 86.88 0.68 22.22 16 16 O -0.59 -26.29 16.66 -3.76 -0.06 -26.36 16 17 C 0.05 1.60 6.72 41.87 0.28 1.88 16 18 C -0.12 -2.99 9.26 22.68 0.21 -2.78 16 19 C -0.05 -0.78 5.74 -19.88 -0.11 -0.90 16 20 C -0.10 -1.35 5.75 -19.80 -0.11 -1.46 16 21 C 0.10 1.54 10.79 84.98 0.92 2.46 16 22 N -0.47 -11.18 6.61 -184.70 -1.22 -12.40 16 23 C -0.08 -0.48 5.71 29.71 0.17 -0.31 16 24 C -0.12 -0.65 5.97 30.62 0.18 -0.46 16 25 C -0.12 -0.84 5.98 30.63 0.18 -0.66 16 26 C -0.09 -1.00 5.71 29.68 0.17 -0.83 16 27 C 0.09 3.97 6.62 86.73 0.57 4.54 16 28 H 0.24 15.51 6.77 -92.71 -0.63 14.88 16 29 H 0.36 19.47 6.59 -92.71 -0.61 18.86 16 30 H 0.06 2.16 8.01 -2.39 -0.02 2.14 16 31 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 32 H 0.12 3.05 5.89 -2.39 -0.01 3.03 16 33 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.14 3.55 7.64 -2.91 -0.02 3.53 16 35 H 0.20 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.10 0.30 8.13 -2.38 -0.02 0.28 16 38 H 0.06 0.41 8.10 -2.39 -0.02 0.39 16 39 H 0.09 0.21 8.14 -2.38 -0.02 0.19 16 40 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 41 H 0.07 0.51 8.10 -2.39 -0.02 0.49 16 42 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 44 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.04 1.79 8.03 -2.39 -0.02 1.77 16 Total: -1.00 -77.70 360.86 2.59 -75.10 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.53 Total: 27.42 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 5.34 Total: 6.83 kcal Atomic # 7 Polarization: -132.86 SS G_CDS: -5.27 Total: -138.12 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.06 Total: -26.36 kcal Atomic # 14 Polarization: 53.07 SS G_CDS: 2.05 Total: 55.12 kcal Total: -77.70 2.59 -75.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969273753.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.860 kcal (2) G-P(sol) polarization free energy of solvation -77.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds