Wall clock time and date at job start Tue Mar 31 2020 11:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00220 * 2 1 4 4 H 1.48494 * 109.47480 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47008 * 300.00537 * 3 2 1 6 6 H 1.48502 * 109.46978 * 60.00203 * 3 2 1 7 7 C 1.38813 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00017 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00112 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00282 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.63815 * 31.86627 * 10 9 7 12 12 C 1.55154 * 110.87619 * 268.61499 * 10 9 7 13 13 C 1.55125 * 101.48685 * 205.89550 * 12 10 9 14 14 N 1.47431 * 104.72226 * 37.29583 * 13 12 10 15 15 C 1.34780 * 125.64651 * 155.81912 * 14 13 12 16 16 O 1.21282 * 119.99530 * 184.77019 * 15 14 13 17 17 C 1.50697 * 119.99947 * 4.76470 * 15 14 13 18 18 H 1.09001 * 109.25459 * 25.41539 * 17 15 14 19 19 C 1.52715 * 109.22783 * 265.95594 * 17 15 14 20 20 C 1.53317 * 108.45528 * 188.44506 * 19 17 15 21 21 C 1.52767 * 108.36179 * 69.81099 * 20 19 17 22 22 C 1.50508 * 110.49036 * 308.89364 * 21 20 19 23 23 C 1.39187 * 117.96960 * 197.12797 * 22 21 20 24 24 C 1.38412 * 118.86061 * 180.82443 * 23 22 21 25 25 C 1.38238 * 118.84252 * 0.23443 * 24 23 22 26 26 N 1.31506 * 120.61347 * 359.84236 * 25 24 23 27 27 C 1.32706 * 122.39992 * 0.07540 * 26 25 24 28 28 C 1.47013 * 108.70057 * 335.55222 * 14 13 12 29 29 H 0.96998 * 119.99846 * 359.97438 * 1 2 3 30 30 H 0.97007 * 119.99967 * 0.02562 * 9 7 2 31 31 H 1.09003 * 111.00320 * 324.13722 * 12 10 9 32 32 H 1.09005 * 111.00216 * 87.94553 * 12 10 9 33 33 H 1.08999 * 110.49765 * 278.45164 * 13 12 10 34 34 H 1.09005 * 110.34014 * 156.05964 * 13 12 10 35 35 H 1.08995 * 109.64227 * 308.13633 * 19 17 15 36 36 H 1.09004 * 109.63829 * 68.76009 * 19 17 15 37 37 H 1.09007 * 109.68679 * 189.52629 * 20 19 17 38 38 H 1.08994 * 109.68706 * 310.05383 * 20 19 17 39 39 H 1.08994 * 109.26395 * 69.37820 * 21 20 19 40 40 H 1.09000 * 109.26171 * 188.86239 * 21 20 19 41 41 H 1.07995 * 120.57159 * 1.10360 * 23 22 21 42 42 H 1.08001 * 120.57793 * 180.24987 * 24 23 22 43 43 H 1.08001 * 119.69331 * 179.81597 * 25 24 23 44 44 H 1.09000 * 109.88342 * 120.70583 * 28 14 13 45 45 H 1.09000 * 109.88375 * 241.87392 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0004 -3.5564 0.5380 12 6 2.3040 -4.1532 -1.4498 13 6 2.4273 -5.6846 -1.2351 14 7 1.4397 -5.9965 -0.1858 15 6 0.8591 -7.1961 0.0148 16 8 -0.0062 -7.3179 0.8558 17 6 1.2852 -8.3861 -0.8059 18 1 2.3079 -8.2365 -1.1519 19 6 0.3598 -8.5216 -2.0132 20 6 0.6702 -9.8483 -2.7161 21 6 0.1980 -10.9906 -1.8182 22 6 0.7399 -10.8233 -0.4240 23 6 0.7221 -11.9297 0.4203 24 6 1.2000 -11.7921 1.7120 25 6 1.6738 -10.5592 2.1199 26 7 1.6737 -9.5352 1.2947 27 6 1.2260 -9.6261 0.0488 28 6 1.1980 -4.7838 0.6094 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 1.4585 -3.9124 -2.0941 32 1 3.2292 -3.7405 -1.8523 33 1 3.4316 -5.9434 -0.8999 34 1 2.1845 -6.2168 -2.1549 35 1 -0.6784 -8.5169 -1.6814 36 1 0.5315 -7.6937 -2.7011 37 1 0.1447 -9.8901 -3.6702 38 1 1.7438 -9.9324 -2.8842 39 1 -0.8915 -10.9959 -1.7861 40 1 0.5502 -11.9379 -2.2264 41 1 0.3462 -12.8804 0.0722 42 1 1.2030 -12.6334 2.3892 43 1 2.0471 -10.4356 3.1258 44 1 0.1433 -4.5128 0.5610 45 1 1.4917 -4.9550 1.6451 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969673445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:54 Heat of formation + Delta-G solvation = 7.847247 kcal Electronic energy + Delta-G solvation = -26189.578706 eV Core-core repulsion = 22592.603498 eV Total energy + Delta-G solvation = -3596.975208 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.10376 -39.46282 -37.32375 -36.50687 -34.09088 -33.45785 -31.52784 -30.69692 -30.19766 -29.43017 -27.65513 -24.99601 -23.87042 -23.47825 -23.07951 -22.41394 -20.32342 -19.91236 -19.02568 -17.40268 -17.16145 -16.78751 -16.64468 -15.73891 -15.55783 -15.06001 -14.62217 -14.31725 -14.22433 -14.02439 -13.67725 -13.50924 -13.29108 -13.10925 -12.97498 -12.67158 -12.62853 -12.36790 -12.04198 -11.83674 -11.60520 -11.45894 -11.19763 -11.15625 -10.84512 -10.84152 -10.68875 -10.28499 -10.04587 -9.86396 -9.75422 -9.61683 -9.36628 -8.96409 -8.91474 -8.28491 -7.02871 -5.80928 -3.11364 0.93595 1.12438 2.88133 3.19186 3.41543 3.47188 3.49529 3.65932 3.97787 4.32958 4.46509 4.52581 4.55945 4.65088 4.74613 4.83710 4.90409 4.98997 5.05257 5.10756 5.25466 5.34313 5.37873 5.41762 5.46978 5.51145 5.57176 5.59179 5.63220 5.66608 5.76986 5.84548 5.97603 5.99149 6.02159 6.06527 6.17725 6.32594 6.43097 6.52373 6.62667 6.68312 6.93269 7.66925 7.83290 7.92263 8.36349 8.46549 9.47987 10.02864 10.37599 11.41387 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028153 B = 0.002715 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.339189 B =10312.168211 C =10761.467659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.715 5.715 10 C 0.172 3.828 11 H 0.066 0.934 12 C -0.154 4.154 13 C 0.097 3.903 14 N -0.613 5.613 15 C 0.546 3.454 16 O -0.534 6.534 17 C -0.051 4.051 18 H 0.105 0.895 19 C -0.111 4.111 20 C -0.118 4.118 21 C -0.077 4.077 22 C -0.124 4.124 23 C -0.080 4.080 24 C -0.176 4.176 25 C 0.104 3.896 26 N -0.469 5.469 27 C 0.155 3.845 28 C 0.102 3.898 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.155 0.845 44 H 0.069 0.931 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 -26.279 -5.031 27.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.356 5.356 10 C 0.060 3.940 11 H 0.084 0.916 12 C -0.195 4.195 13 C -0.026 4.026 14 N -0.347 5.347 15 C 0.333 3.667 16 O -0.410 6.410 17 C -0.073 4.073 18 H 0.123 0.877 19 C -0.149 4.149 20 C -0.155 4.155 21 C -0.115 4.115 22 C -0.125 4.125 23 C -0.106 4.106 24 C -0.196 4.196 25 C -0.055 4.055 26 N -0.177 5.177 27 C 0.019 3.981 28 C -0.021 4.021 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.172 0.828 44 H 0.087 0.913 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.846 -25.429 -4.243 26.066 hybrid contribution -0.112 0.066 -0.137 0.190 sum 3.733 -25.363 -4.380 26.008 Atomic orbital electron populations 1.69679 1.05160 1.25733 1.57184 1.24779 0.95527 0.97822 1.02643 0.86100 0.78772 0.83975 0.77202 1.20484 1.21840 1.21812 1.19275 0.91079 0.83826 1.43255 0.90897 1.42381 1.05830 0.99406 1.87938 1.21186 0.94592 0.85696 0.92536 0.91582 1.23588 1.02680 0.91650 1.01588 1.22450 0.91947 0.97971 0.90247 1.48424 1.43184 1.09722 1.33387 1.19624 0.81432 0.82221 0.83430 1.90684 1.31272 1.84036 1.34998 1.20086 1.02219 0.90348 0.94675 0.87677 1.21552 0.99787 0.98648 0.94932 1.21568 1.01970 0.93621 0.98371 1.20450 1.00941 0.99461 0.90656 1.20390 1.00731 0.93761 0.97665 1.21527 0.97203 0.98393 0.93503 1.22110 1.01080 0.99403 0.96961 1.22657 0.95702 0.88155 0.99029 1.67507 1.14547 1.32479 1.03182 1.20351 0.94504 0.92571 0.90707 1.22310 1.01216 0.83893 0.94729 0.93423 0.77950 0.90642 0.90585 0.91694 0.91441 0.90469 0.89999 0.90437 0.91164 0.90126 0.90453 0.84937 0.84844 0.82822 0.91266 0.91796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 7 C -0.24 -6.60 9.96 -15.06 -0.15 -6.75 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.72 -17.66 5.23 -51.65 -0.27 -17.93 16 10 C 0.17 3.35 3.60 -66.10 -0.24 3.12 16 11 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 12 C -0.15 -2.49 6.79 -24.47 -0.17 -2.66 16 13 C 0.10 1.29 6.18 -2.41 -0.01 1.28 16 14 N -0.61 -10.04 3.32 -170.38 -0.57 -10.61 16 15 C 0.55 9.22 6.38 -10.99 -0.07 9.15 16 16 O -0.53 -11.18 16.42 5.56 0.09 -11.09 16 17 C -0.05 -0.65 2.11 -93.06 -0.20 -0.85 16 18 H 0.11 1.16 7.13 -51.93 -0.37 0.79 16 19 C -0.11 -1.11 5.23 -26.71 -0.14 -1.25 16 20 C -0.12 -0.85 5.98 -26.69 -0.16 -1.01 16 21 C -0.08 -0.58 5.69 -28.10 -0.16 -0.74 16 22 C -0.12 -1.30 5.74 -104.60 -0.60 -1.90 16 23 C -0.08 -0.72 9.75 -39.17 -0.38 -1.11 16 24 C -0.18 -1.62 10.12 -39.52 -0.40 -2.02 16 25 C 0.10 1.22 11.19 -17.69 -0.20 1.02 16 26 N -0.47 -6.98 9.19 -9.51 -0.09 -7.07 16 27 C 0.15 2.07 5.82 -82.44 -0.48 1.59 16 28 C 0.10 1.92 6.62 -3.07 -0.02 1.90 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.39 10.28 7.56 -40.82 -0.31 9.97 16 31 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.72 7.23 -51.93 -0.38 0.35 16 35 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 36 H 0.08 0.74 7.70 -51.93 -0.40 0.34 16 37 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.43 8.13 -51.93 -0.42 0.01 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 44 H 0.07 1.43 7.72 -51.93 -0.40 1.03 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -34.41 363.65 -10.01 -44.42 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -6.89 Total: 7.59 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -3.47 Total: -0.66 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.20 Total: -62.79 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.41 -10.01 -44.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969673445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.263 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds