Wall clock time and date at job start Tue Mar 31 2020 11:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 120.00220 * 2 1 4 4 H 1.48494 * 109.47480 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47008 * 300.00537 * 3 2 1 6 6 H 1.48502 * 109.46978 * 60.00203 * 3 2 1 7 7 C 1.38813 * 119.99868 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00017 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00112 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00282 * 180.02562 * 9 7 2 11 11 H 1.09004 * 110.63815 * 31.86627 * 10 9 7 12 12 C 1.55154 * 110.87619 * 268.61499 * 10 9 7 13 13 C 1.55125 * 101.48685 * 205.89550 * 12 10 9 14 14 N 1.47431 * 104.72226 * 37.29583 * 13 12 10 15 15 C 1.34780 * 125.64651 * 155.81912 * 14 13 12 16 16 O 1.21282 * 119.99530 * 184.77019 * 15 14 13 17 17 C 1.50697 * 119.99947 * 4.76470 * 15 14 13 18 18 H 1.09001 * 109.25459 * 25.41539 * 17 15 14 19 19 C 1.52715 * 109.22783 * 265.95594 * 17 15 14 20 20 C 1.53317 * 108.45528 * 188.44506 * 19 17 15 21 21 C 1.52767 * 108.36179 * 69.81099 * 20 19 17 22 22 C 1.50508 * 110.49036 * 308.89364 * 21 20 19 23 23 C 1.39187 * 117.96960 * 197.12797 * 22 21 20 24 24 C 1.38412 * 118.86061 * 180.82443 * 23 22 21 25 25 C 1.38238 * 118.84252 * 0.23443 * 24 23 22 26 26 N 1.31506 * 120.61347 * 359.84236 * 25 24 23 27 27 C 1.32706 * 122.39992 * 0.07540 * 26 25 24 28 28 C 1.47013 * 108.70057 * 335.55222 * 14 13 12 29 29 H 0.96998 * 119.99846 * 359.97438 * 1 2 3 30 30 H 0.97007 * 119.99967 * 0.02562 * 9 7 2 31 31 H 1.09003 * 111.00320 * 324.13722 * 12 10 9 32 32 H 1.09005 * 111.00216 * 87.94553 * 12 10 9 33 33 H 1.08999 * 110.49765 * 278.45164 * 13 12 10 34 34 H 1.09005 * 110.34014 * 156.05964 * 13 12 10 35 35 H 1.08995 * 109.64227 * 308.13633 * 19 17 15 36 36 H 1.09004 * 109.63829 * 68.76009 * 19 17 15 37 37 H 1.09007 * 109.68679 * 189.52629 * 20 19 17 38 38 H 1.08994 * 109.68706 * 310.05383 * 20 19 17 39 39 H 1.08994 * 109.26395 * 69.37820 * 21 20 19 40 40 H 1.09000 * 109.26171 * 188.86239 * 21 20 19 41 41 H 1.07995 * 120.57159 * 1.10360 * 23 22 21 42 42 H 1.08001 * 120.57793 * 180.24987 * 24 23 22 43 43 H 1.08001 * 119.69331 * 179.81597 * 25 24 23 44 44 H 1.09000 * 109.88342 * 120.70583 * 28 14 13 45 45 H 1.09000 * 109.88375 * 241.87392 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 3.0004 -3.5564 0.5380 12 6 2.3040 -4.1532 -1.4498 13 6 2.4273 -5.6846 -1.2351 14 7 1.4397 -5.9965 -0.1858 15 6 0.8591 -7.1961 0.0148 16 8 -0.0062 -7.3179 0.8558 17 6 1.2852 -8.3861 -0.8059 18 1 2.3079 -8.2365 -1.1519 19 6 0.3598 -8.5216 -2.0132 20 6 0.6702 -9.8483 -2.7161 21 6 0.1980 -10.9906 -1.8182 22 6 0.7399 -10.8233 -0.4240 23 6 0.7221 -11.9297 0.4203 24 6 1.2000 -11.7921 1.7120 25 6 1.6738 -10.5592 2.1199 26 7 1.6737 -9.5352 1.2947 27 6 1.2260 -9.6261 0.0488 28 6 1.1980 -4.7838 0.6094 29 1 -0.4850 0.8400 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 1.4585 -3.9124 -2.0941 32 1 3.2292 -3.7405 -1.8523 33 1 3.4316 -5.9434 -0.8999 34 1 2.1845 -6.2168 -2.1549 35 1 -0.6784 -8.5169 -1.6814 36 1 0.5315 -7.6937 -2.7011 37 1 0.1447 -9.8901 -3.6702 38 1 1.7438 -9.9324 -2.8842 39 1 -0.8915 -10.9959 -1.7861 40 1 0.5502 -11.9379 -2.2264 41 1 0.3462 -12.8804 0.0722 42 1 1.2030 -12.6334 2.3892 43 1 2.0471 -10.4356 3.1258 44 1 0.1433 -4.5128 0.5610 45 1 1.4917 -4.9550 1.6451 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969673445.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:53 Heat of formation + Delta-G solvation = -14.706054 kcal Electronic energy + Delta-G solvation = -26190.556691 eV Core-core repulsion = 22592.603498 eV Total energy + Delta-G solvation = -3597.953193 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.01467 -40.67869 -38.70509 -37.36057 -35.92142 -34.32356 -33.28751 -31.46549 -31.25461 -30.79391 -29.20406 -26.13647 -25.32258 -24.40227 -24.20934 -23.48838 -21.64076 -20.91019 -20.21941 -19.36125 -18.36869 -17.72352 -17.49603 -17.14016 -16.48187 -16.40325 -16.03824 -15.55600 -15.33482 -15.06954 -14.87720 -14.77564 -14.57064 -14.17589 -13.94969 -13.79285 -13.65075 -13.46620 -13.19226 -13.14444 -12.99459 -12.89855 -12.68774 -12.36239 -12.23429 -12.08627 -11.85210 -11.73840 -11.69722 -11.50794 -10.96453 -10.89566 -10.56690 -10.27908 -9.71447 -9.67405 -9.05746 -7.95359 -5.26068 0.14781 0.37765 1.48895 1.49993 1.59832 1.60570 1.93417 2.56697 2.82393 3.14353 3.35959 3.51316 3.62088 3.74985 3.82613 3.87653 3.90815 4.02335 4.06751 4.14116 4.18865 4.26373 4.33897 4.37280 4.39706 4.52459 4.59593 4.62865 4.69532 4.79797 4.85675 4.87693 4.92825 4.98461 5.09650 5.15352 5.20569 5.26905 5.27504 5.36671 5.39127 5.43804 5.53283 5.80998 6.24965 6.54343 7.09844 7.14872 7.31127 8.02385 8.26823 9.28505 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028153 B = 0.002715 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.339189 B =10312.168211 C =10761.467659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.298 1.298 7 C -0.238 4.238 8 H 0.085 0.915 9 N -0.731 5.731 10 C 0.167 3.833 11 H 0.071 0.929 12 C -0.142 4.142 13 C 0.103 3.897 14 N -0.615 5.615 15 C 0.540 3.460 16 O -0.585 6.585 17 C -0.042 4.042 18 H 0.123 0.877 19 C -0.109 4.109 20 C -0.111 4.111 21 C -0.078 4.078 22 C -0.126 4.126 23 C -0.082 4.082 24 C -0.168 4.168 25 C 0.077 3.923 26 N -0.516 5.516 27 C 0.119 3.881 28 C 0.111 3.889 29 H 0.251 0.749 30 H 0.371 0.629 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.054 0.946 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.169 0.831 42 H 0.166 0.834 43 H 0.163 0.837 44 H 0.040 0.960 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.776 -29.004 -7.112 30.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.221 1.221 6 H -0.225 1.225 7 C -0.370 4.370 8 H 0.102 0.898 9 N -0.370 5.370 10 C 0.057 3.943 11 H 0.089 0.911 12 C -0.182 4.182 13 C -0.018 4.018 14 N -0.348 5.348 15 C 0.330 3.670 16 O -0.465 6.465 17 C -0.064 4.064 18 H 0.141 0.859 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.115 4.115 22 C -0.128 4.128 23 C -0.108 4.108 24 C -0.187 4.187 25 C -0.083 4.083 26 N -0.225 5.225 27 C -0.016 4.016 28 C -0.014 4.014 29 H 0.059 0.941 30 H 0.203 0.797 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.124 0.876 41 H 0.187 0.813 42 H 0.184 0.816 43 H 0.180 0.820 44 H 0.059 0.941 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.773 -28.202 -6.355 29.480 hybrid contribution -0.695 0.792 0.598 1.212 sum 5.078 -27.410 -5.758 28.465 Atomic orbital electron populations 1.69849 1.06851 1.26046 1.59527 1.25626 0.96340 1.01332 1.03664 0.85031 0.78429 0.79583 0.76443 1.18509 1.22082 1.22499 1.19695 0.91686 0.84640 1.40938 0.89759 1.42559 1.05335 1.00745 1.88364 1.21372 0.94002 0.83898 0.95046 0.91143 1.23381 1.02801 0.93775 0.98286 1.22631 0.92359 0.95956 0.90900 1.48543 1.43720 1.08901 1.33651 1.20555 0.80353 0.83077 0.83048 1.90644 1.33617 1.84867 1.37384 1.20146 1.03522 0.88037 0.94681 0.85941 1.21602 0.97859 1.01176 0.94143 1.21581 1.03057 0.91391 0.98744 1.20569 1.01002 1.00961 0.88990 1.20774 0.99462 0.93108 0.99433 1.22018 0.96278 0.99404 0.93126 1.22465 0.99283 0.99201 0.97749 1.23001 0.96869 0.88969 0.99418 1.67404 1.16280 1.34347 1.04493 1.20583 0.96516 0.93796 0.90735 1.21980 0.99353 0.85294 0.94760 0.94065 0.79688 0.92174 0.88907 0.89241 0.87787 0.92683 0.88877 0.88150 0.89972 0.89868 0.87591 0.81344 0.81629 0.81961 0.94120 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.19 13.06 21.65 0.28 -59.90 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 3 Si 0.98 45.83 29.55 68.60 2.03 47.86 16 4 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 7 C -0.24 -12.98 9.96 84.03 0.84 -12.14 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 9 N -0.73 -37.04 5.23 -317.33 -1.66 -38.70 16 10 C 0.17 6.56 3.60 46.18 0.17 6.72 16 11 H 0.07 2.72 8.09 -2.38 -0.02 2.70 16 12 C -0.14 -4.40 6.79 32.06 0.22 -4.18 16 13 C 0.10 2.50 6.18 86.93 0.54 3.04 16 14 N -0.61 -20.19 3.32 -811.35 -2.70 -22.89 16 15 C 0.54 18.59 6.38 87.66 0.56 19.15 16 16 O -0.59 -25.91 16.42 -3.04 -0.05 -25.96 16 17 C -0.04 -1.03 2.11 -12.37 -0.03 -1.05 16 18 H 0.12 2.43 7.13 -2.39 -0.02 2.41 16 19 C -0.11 -2.00 5.23 30.61 0.16 -1.84 16 20 C -0.11 -1.20 5.98 30.62 0.18 -1.01 16 21 C -0.08 -0.90 5.69 29.71 0.17 -0.73 16 22 C -0.13 -2.39 5.74 -19.85 -0.11 -2.50 16 23 C -0.08 -1.25 9.75 22.54 0.22 -1.03 16 24 C -0.17 -2.75 10.12 22.31 0.23 -2.53 16 25 C 0.08 1.79 11.19 84.74 0.95 2.74 16 26 N -0.52 -15.63 9.19 -184.01 -1.69 -17.32 16 27 C 0.12 3.11 5.82 42.28 0.25 3.36 16 28 C 0.11 4.36 6.62 86.73 0.57 4.93 16 29 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.37 20.76 7.56 -92.70 -0.70 20.06 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.09 2.60 8.14 -2.38 -0.02 2.58 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.10 1.84 7.23 -2.38 -0.02 1.82 16 35 H 0.05 1.25 8.08 -2.39 -0.02 1.23 16 36 H 0.09 1.44 7.70 -2.39 -0.02 1.42 16 37 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 38 H 0.08 0.74 8.10 -2.39 -0.02 0.72 16 39 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.11 0.66 8.13 -2.39 -0.02 0.64 16 41 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 42 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 43 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 44 H 0.04 1.82 7.72 -2.39 -0.02 1.80 16 45 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -79.64 363.65 1.87 -77.77 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: 0.29 Total: 30.20 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 5.37 Total: 8.95 kcal Atomic # 7 Polarization: -133.05 SS G_CDS: -5.77 Total: -138.81 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.05 Total: -25.96 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -79.64 1.87 -77.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969673445.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.061 kcal (2) G-P(sol) polarization free energy of solvation -79.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds