Wall clock time and date at job start Tue Mar 31 2020 11:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00311 * 2 1 4 4 H 1.48494 * 109.47018 * 274.43877 * 3 2 1 5 5 H 1.48499 * 109.46953 * 34.44503 * 3 2 1 6 6 H 1.48500 * 109.47181 * 154.44191 * 3 2 1 7 7 C 1.38819 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99841 * 189.01196 * 7 2 1 9 9 N 1.36936 * 120.00031 * 9.01167 * 7 2 1 10 10 C 1.48146 * 127.83664 * 15.56806 * 9 7 2 11 11 C 1.54390 * 104.61757 * 140.39937 * 10 9 7 12 12 H 1.08999 * 118.18127 * 244.20338 * 11 10 9 13 13 C 1.52999 * 118.12703 * 87.18725 * 11 10 9 14 14 H 1.09008 * 117.43769 * 16.07093 * 13 11 10 15 15 C 1.52996 * 117.44418 * 160.81010 * 13 11 10 16 16 N 1.46496 * 109.47323 * 185.00314 * 15 13 11 17 17 C 1.34774 * 120.00217 * 179.97438 * 16 15 13 18 18 O 1.21696 * 120.00206 * 359.73202 * 17 16 15 19 19 C 1.46681 * 120.00126 * 180.02562 * 17 16 15 20 20 C 1.37758 * 126.22681 * 179.72660 * 19 17 16 21 21 C 1.40101 * 107.10486 * 179.97438 * 20 19 17 22 22 C 1.35329 * 107.93563 * 0.02562 * 21 20 19 23 23 N 1.36009 * 108.67356 * 359.71859 * 22 21 20 24 24 H 0.96991 * 125.63100 * 180.27197 * 23 22 21 25 25 C 1.51500 * 110.12784 * 179.97438 * 22 21 20 26 26 C 1.54401 * 105.03170 * 17.00545 * 25 22 21 27 27 C 1.51360 * 141.73743 * 180.02562 * 21 20 19 28 28 C 1.52999 * 60.55969 * 268.46377 * 13 11 10 29 29 H 1.08995 * 119.53791 * 248.23727 * 28 13 11 30 30 C 1.48149 * 127.83943 * 195.55193 * 9 7 2 31 31 H 0.97005 * 119.99661 * 0.02562 * 1 2 3 32 32 H 1.08997 * 110.40981 * 21.61531 * 10 9 7 33 33 H 1.09003 * 110.41076 * 259.18089 * 10 9 7 34 34 H 1.08999 * 109.47216 * 65.00498 * 15 13 11 35 35 H 1.09007 * 109.47407 * 305.00429 * 15 13 11 36 36 H 0.97007 * 119.99739 * 0.02562 * 16 15 13 37 37 H 1.07994 * 126.44601 * 0.02562 * 20 19 17 38 38 H 1.09004 * 110.32839 * 135.89358 * 25 22 21 39 39 H 1.09000 * 110.32879 * 258.11635 * 25 22 21 40 40 H 1.09000 * 110.92278 * 92.33597 * 26 25 22 41 41 H 1.08995 * 110.92352 * 215.94244 * 26 25 22 42 42 H 1.09002 * 110.33377 * 281.91006 * 27 21 20 43 43 H 1.08996 * 110.33639 * 44.16234 * 27 21 20 44 44 H 1.08996 * 110.40747 * 100.81547 * 30 9 7 45 45 H 1.09002 * 110.50187 * 338.43233 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4039 2.1005 -1.3958 5 1 1.4978 2.6237 0.7919 6 1 3.5916 1.4148 0.6040 7 6 2.0102 -1.2022 0.0005 8 1 3.0802 -1.2079 0.1471 9 7 1.3381 -2.3809 -0.1847 10 6 -0.0353 -2.5716 -0.7063 11 6 0.0615 -3.8183 -1.6118 12 1 -0.1271 -3.6957 -2.6784 13 6 -0.1196 -5.1939 -0.9670 14 1 -0.5675 -5.2280 0.0263 15 6 -0.4699 -6.3640 -1.8884 16 7 -0.7189 -7.5622 -1.0832 17 6 -1.0472 -8.7225 -1.6851 18 8 -1.1417 -8.7737 -2.8973 19 6 -1.2971 -9.9220 -0.8788 20 6 -1.6442 -11.1665 -1.3568 21 6 -1.7830 -12.0102 -0.2469 22 6 -1.5246 -11.2826 0.8645 23 7 -1.2216 -10.0103 0.4914 24 1 -0.9925 -9.2845 1.0927 25 6 -1.6617 -12.1501 2.0990 26 6 -1.6132 -13.6019 1.5757 27 6 -2.1188 -13.4382 0.1258 28 6 1.2846 -4.5983 -1.0863 29 1 2.0071 -5.0567 -1.7614 30 6 1.8197 -3.7546 0.0907 31 1 -0.4850 0.8401 -0.0004 32 1 -0.3453 -1.7030 -1.2873 33 1 -0.7317 -2.7501 0.1130 34 1 0.3597 -6.5505 -2.5703 35 1 -1.3640 -6.1196 -2.4622 36 1 -0.6481 -7.5203 -0.1166 37 1 -1.7824 -11.4404 -2.3922 38 1 -0.8341 -11.9668 2.7844 39 1 -2.6137 -11.9574 2.5935 40 1 -0.5938 -13.9874 1.5910 41 1 -2.2793 -14.2453 2.1504 42 1 -3.1960 -13.5983 0.0799 43 1 -1.6030 -14.1338 -0.5362 44 1 1.4130 -4.1178 1.0345 45 1 2.9092 -3.7801 0.1122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978947538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:22 Heat of formation + Delta-G solvation = 70.576540 kcal Electronic energy + Delta-G solvation = -24878.463552 eV Core-core repulsion = 21284.208490 eV Total energy + Delta-G solvation = -3594.255062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.89768 -39.57818 -38.67338 -36.29368 -35.07642 -33.38934 -31.30066 -30.93911 -28.84262 -27.59402 -27.20287 -26.95383 -24.96085 -22.81947 -21.39501 -21.19695 -20.51579 -19.80681 -19.36584 -19.20762 -18.28726 -16.86424 -16.15136 -16.05646 -15.89217 -15.38326 -14.85738 -14.38567 -14.11612 -13.93394 -13.73876 -13.60169 -13.28820 -13.11462 -13.04011 -12.79079 -12.69304 -12.14286 -11.89941 -11.70522 -11.54067 -11.34374 -11.30404 -11.14816 -10.87735 -10.69960 -10.38387 -10.26184 -10.15624 -9.78515 -9.50044 -9.20387 -9.08221 -9.00978 -8.68264 -8.20550 -6.91448 -5.83778 -3.18386 1.24633 2.39365 2.55365 2.97643 3.25586 3.35615 3.41053 3.42994 4.07647 4.14423 4.29835 4.42801 4.61108 4.65163 4.83291 4.85399 5.03409 5.21992 5.24837 5.30792 5.33476 5.34402 5.39710 5.45011 5.50937 5.62610 5.71533 5.76657 5.82384 5.84502 5.87375 5.92160 5.95310 6.18065 6.24655 6.48866 6.50677 6.60184 6.64845 6.72233 6.86512 7.09218 7.30562 7.37335 7.48905 7.67929 8.03896 8.16768 9.06984 9.69697 10.46393 11.30499 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.031036 B = 0.002055 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.962951 B =13623.437592 C =14143.200079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.594 5.594 10 C 0.183 3.817 11 C -0.160 4.160 12 H 0.104 0.896 13 C -0.152 4.152 14 H 0.101 0.899 15 C 0.156 3.844 16 N -0.724 5.724 17 C 0.588 3.412 18 O -0.531 6.531 19 C -0.044 4.044 20 C -0.085 4.085 21 C -0.197 4.197 22 C 0.017 3.983 23 N -0.522 5.522 24 H 0.413 0.587 25 C -0.042 4.042 26 C -0.115 4.115 27 C -0.050 4.050 28 C -0.172 4.172 29 H 0.104 0.896 30 C 0.154 3.846 31 H 0.255 0.745 32 H 0.091 0.909 33 H 0.023 0.977 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.395 0.605 37 H 0.147 0.853 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.023 0.977 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 -25.886 3.580 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.318 5.318 10 C 0.058 3.942 11 C -0.180 4.180 12 H 0.122 0.878 13 C -0.171 4.171 14 H 0.119 0.881 15 C 0.033 3.967 16 N -0.375 5.375 17 C 0.376 3.624 18 O -0.407 6.407 19 C -0.156 4.156 20 C -0.112 4.112 21 C -0.203 4.203 22 C -0.101 4.101 23 N -0.118 5.118 24 H 0.250 0.750 25 C -0.081 4.081 26 C -0.153 4.153 27 C -0.087 4.087 28 C -0.192 4.192 29 H 0.122 0.878 30 C 0.028 3.972 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.041 0.959 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.229 0.771 37 H 0.164 0.836 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.040 0.960 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.527 -25.420 2.783 25.969 hybrid contribution 0.587 1.387 0.715 1.667 sum -3.940 -24.033 3.498 24.604 Atomic orbital electron populations 1.69895 1.05072 1.25445 1.55765 1.24909 0.95669 0.98025 1.01715 0.86080 0.78710 0.83236 0.77602 1.21484 1.21652 1.20488 1.19017 0.90813 0.82339 1.43413 0.90539 1.45210 1.13244 1.00000 1.73309 1.21072 0.86817 0.92750 0.93577 1.24247 1.02003 0.91615 1.00175 0.87764 1.22523 1.00466 0.93907 1.00176 0.88073 1.20915 1.01381 0.81783 0.92641 1.45925 1.71172 1.09958 1.10440 1.16986 0.76962 0.81457 0.87028 1.90851 1.52351 1.84563 1.12946 1.20269 1.17249 0.96670 0.81441 1.20679 1.02055 0.89810 0.98664 1.20311 1.10439 0.96791 0.92780 1.21276 1.05272 0.84675 0.98871 1.41345 1.54219 1.09781 1.06409 0.74960 1.20724 1.02635 0.92261 0.92438 1.22334 1.02190 0.94902 0.95898 1.20478 1.00880 0.91774 0.95609 1.24011 0.89798 1.02602 1.02755 0.87850 1.21131 0.97158 0.86048 0.92885 0.93532 0.89094 0.95903 0.91115 0.90790 0.77147 0.83574 0.90747 0.89834 0.90654 0.90071 0.90831 0.91101 0.95966 0.93160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.86 55.49 0.60 -26.01 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.26 16 3 Si 0.91 21.82 29.56 -169.99 -5.03 16.79 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.23 -6.30 10.35 -15.06 -0.16 -6.46 16 8 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 9 N -0.59 -15.06 3.38 -168.86 -0.57 -15.63 16 10 C 0.18 4.34 5.70 -2.41 -0.01 4.33 16 11 C -0.16 -2.97 6.85 -89.22 -0.61 -3.58 16 12 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 13 C -0.15 -2.27 5.39 -90.62 -0.49 -2.75 16 14 H 0.10 1.48 8.04 -51.92 -0.42 1.07 16 15 C 0.16 2.10 5.95 -4.05 -0.02 2.07 16 16 N -0.72 -8.54 5.55 -61.62 -0.34 -8.88 16 17 C 0.59 8.02 7.79 -12.85 -0.10 7.92 16 18 O -0.53 -9.11 16.88 5.19 0.09 -9.03 16 19 C -0.04 -0.52 7.05 -82.08 -0.58 -1.10 16 20 C -0.09 -1.00 10.66 -39.06 -0.42 -1.42 16 21 C -0.20 -1.94 6.89 -104.64 -0.72 -2.66 16 22 C 0.02 0.15 8.01 -81.38 -0.65 -0.50 16 23 N -0.52 -4.67 6.00 -5.43 -0.03 -4.71 16 24 H 0.41 2.61 8.18 -40.82 -0.33 2.27 16 25 C -0.04 -0.24 6.79 -26.76 -0.18 -0.42 16 26 C -0.12 -0.56 7.12 -25.25 -0.18 -0.74 16 27 C -0.05 -0.34 6.79 -26.81 -0.18 -0.52 16 28 C -0.17 -2.97 6.74 -89.22 -0.60 -3.57 16 29 H 0.10 1.66 8.12 -51.93 -0.42 1.24 16 30 C 0.15 3.16 7.04 -2.41 -0.02 3.14 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.09 2.42 6.51 -51.93 -0.34 2.08 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.00 7.94 -51.93 -0.41 0.59 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.39 3.64 7.53 -40.82 -0.31 3.33 16 37 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -33.23 368.16 -11.60 -44.83 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -6.85 Total: 3.60 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -5.02 Total: -6.51 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.34 Total: -55.23 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.23 -11.60 -44.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978947538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.402 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds