Wall clock time and date at job start Tue Mar 31 2020 11:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86799 * 120.00311 * 2 1 4 4 H 1.48494 * 109.47018 * 274.43877 * 3 2 1 5 5 H 1.48499 * 109.46953 * 34.44503 * 3 2 1 6 6 H 1.48500 * 109.47181 * 154.44191 * 3 2 1 7 7 C 1.38819 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99841 * 189.01196 * 7 2 1 9 9 N 1.36936 * 120.00031 * 9.01167 * 7 2 1 10 10 C 1.48146 * 127.83664 * 15.56806 * 9 7 2 11 11 C 1.54390 * 104.61757 * 140.39937 * 10 9 7 12 12 H 1.08999 * 118.18127 * 244.20338 * 11 10 9 13 13 C 1.52999 * 118.12703 * 87.18725 * 11 10 9 14 14 H 1.09008 * 117.43769 * 16.07093 * 13 11 10 15 15 C 1.52996 * 117.44418 * 160.81010 * 13 11 10 16 16 N 1.46496 * 109.47323 * 185.00314 * 15 13 11 17 17 C 1.34774 * 120.00217 * 179.97438 * 16 15 13 18 18 O 1.21696 * 120.00206 * 359.73202 * 17 16 15 19 19 C 1.46681 * 120.00126 * 180.02562 * 17 16 15 20 20 C 1.37758 * 126.22681 * 179.72660 * 19 17 16 21 21 C 1.40101 * 107.10486 * 179.97438 * 20 19 17 22 22 C 1.35329 * 107.93563 * 0.02562 * 21 20 19 23 23 N 1.36009 * 108.67356 * 359.71859 * 22 21 20 24 24 H 0.96991 * 125.63100 * 180.27197 * 23 22 21 25 25 C 1.51500 * 110.12784 * 179.97438 * 22 21 20 26 26 C 1.54401 * 105.03170 * 17.00545 * 25 22 21 27 27 C 1.51360 * 141.73743 * 180.02562 * 21 20 19 28 28 C 1.52999 * 60.55969 * 268.46377 * 13 11 10 29 29 H 1.08995 * 119.53791 * 248.23727 * 28 13 11 30 30 C 1.48149 * 127.83943 * 195.55193 * 9 7 2 31 31 H 0.97005 * 119.99661 * 0.02562 * 1 2 3 32 32 H 1.08997 * 110.40981 * 21.61531 * 10 9 7 33 33 H 1.09003 * 110.41076 * 259.18089 * 10 9 7 34 34 H 1.08999 * 109.47216 * 65.00498 * 15 13 11 35 35 H 1.09007 * 109.47407 * 305.00429 * 15 13 11 36 36 H 0.97007 * 119.99739 * 0.02562 * 16 15 13 37 37 H 1.07994 * 126.44601 * 0.02562 * 20 19 17 38 38 H 1.09004 * 110.32839 * 135.89358 * 25 22 21 39 39 H 1.09000 * 110.32879 * 258.11635 * 25 22 21 40 40 H 1.09000 * 110.92278 * 92.33597 * 26 25 22 41 41 H 1.08995 * 110.92352 * 215.94244 * 26 25 22 42 42 H 1.09002 * 110.33377 * 281.91006 * 27 21 20 43 43 H 1.08996 * 110.33639 * 44.16234 * 27 21 20 44 44 H 1.08996 * 110.40747 * 100.81547 * 30 9 7 45 45 H 1.09002 * 110.50187 * 338.43233 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4039 2.1005 -1.3958 5 1 1.4978 2.6237 0.7919 6 1 3.5916 1.4148 0.6040 7 6 2.0102 -1.2022 0.0005 8 1 3.0802 -1.2079 0.1471 9 7 1.3381 -2.3809 -0.1847 10 6 -0.0353 -2.5716 -0.7063 11 6 0.0615 -3.8183 -1.6118 12 1 -0.1271 -3.6957 -2.6784 13 6 -0.1196 -5.1939 -0.9670 14 1 -0.5675 -5.2280 0.0263 15 6 -0.4699 -6.3640 -1.8884 16 7 -0.7189 -7.5622 -1.0832 17 6 -1.0472 -8.7225 -1.6851 18 8 -1.1417 -8.7737 -2.8973 19 6 -1.2971 -9.9220 -0.8788 20 6 -1.6442 -11.1665 -1.3568 21 6 -1.7830 -12.0102 -0.2469 22 6 -1.5246 -11.2826 0.8645 23 7 -1.2216 -10.0103 0.4914 24 1 -0.9925 -9.2845 1.0927 25 6 -1.6617 -12.1501 2.0990 26 6 -1.6132 -13.6019 1.5757 27 6 -2.1188 -13.4382 0.1258 28 6 1.2846 -4.5983 -1.0863 29 1 2.0071 -5.0567 -1.7614 30 6 1.8197 -3.7546 0.0907 31 1 -0.4850 0.8401 -0.0004 32 1 -0.3453 -1.7030 -1.2873 33 1 -0.7317 -2.7501 0.1130 34 1 0.3597 -6.5505 -2.5703 35 1 -1.3640 -6.1196 -2.4622 36 1 -0.6481 -7.5203 -0.1166 37 1 -1.7824 -11.4404 -2.3922 38 1 -0.8341 -11.9668 2.7844 39 1 -2.6137 -11.9574 2.5935 40 1 -0.5938 -13.9874 1.5910 41 1 -2.2793 -14.2453 2.1504 42 1 -3.1960 -13.5983 0.0799 43 1 -1.6030 -14.1338 -0.5362 44 1 1.4130 -4.1178 1.0345 45 1 2.9092 -3.7801 0.1122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978947538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:21 Heat of formation + Delta-G solvation = 49.997895 kcal Electronic energy + Delta-G solvation = -24879.355909 eV Core-core repulsion = 21284.208490 eV Total energy + Delta-G solvation = -3595.147419 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.64057 -40.80696 -40.03727 -36.86690 -36.43853 -35.05575 -32.78207 -32.01355 -29.89570 -28.91094 -28.32813 -28.06020 -26.54638 -23.79394 -22.78119 -22.05658 -21.75767 -20.92875 -20.81196 -20.01979 -19.14121 -18.83604 -17.21778 -16.87752 -16.74409 -16.66663 -16.28365 -15.92500 -15.38073 -15.07432 -14.81502 -14.63330 -14.48891 -14.40986 -14.06903 -13.87459 -13.54802 -13.39679 -13.20620 -12.91648 -12.75760 -12.71207 -12.35400 -12.32781 -12.01241 -11.95992 -11.95315 -11.79641 -11.73161 -11.41590 -10.97144 -10.75137 -10.60597 -10.22370 -9.81510 -8.93747 -8.93064 -7.93946 -5.30297 0.36751 1.44947 1.46760 1.55806 1.64698 1.81953 1.98443 2.28186 2.45652 2.69290 3.23554 3.56467 3.56707 3.67610 3.76287 3.81590 3.88787 4.14189 4.22789 4.26966 4.29137 4.38607 4.44891 4.52117 4.57804 4.62322 4.69048 4.87724 4.90895 4.92111 4.99228 5.03123 5.08777 5.12989 5.19656 5.27317 5.30730 5.35019 5.43094 5.45299 5.50394 5.64348 5.74906 5.94865 6.15976 6.36354 6.53243 6.99053 7.02994 7.66194 8.44177 9.19746 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.031036 B = 0.002055 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.962951 B =13623.437592 C =14143.200079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.980 3.020 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.266 1.266 7 C -0.240 4.240 8 H 0.081 0.919 9 N -0.621 5.621 10 C 0.189 3.811 11 C -0.175 4.175 12 H 0.113 0.887 13 C -0.110 4.110 14 H 0.111 0.889 15 C 0.164 3.836 16 N -0.712 5.712 17 C 0.590 3.410 18 O -0.574 6.574 19 C -0.066 4.066 20 C -0.105 4.105 21 C -0.220 4.220 22 C 0.027 3.973 23 N -0.512 5.512 24 H 0.426 0.574 25 C -0.042 4.042 26 C -0.109 4.109 27 C -0.052 4.052 28 C -0.161 4.161 29 H 0.124 0.876 30 C 0.149 3.851 31 H 0.250 0.750 32 H 0.052 0.948 33 H 0.003 0.997 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.410 0.590 37 H 0.137 0.863 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.029 0.971 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.878 -28.016 5.143 28.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.258 4.258 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.220 1.220 6 H -0.190 1.190 7 C -0.369 4.369 8 H 0.099 0.901 9 N -0.345 5.345 10 C 0.063 3.937 11 C -0.196 4.196 12 H 0.131 0.869 13 C -0.129 4.129 14 H 0.129 0.871 15 C 0.041 3.959 16 N -0.363 5.363 17 C 0.379 3.621 18 O -0.454 6.454 19 C -0.178 4.178 20 C -0.132 4.132 21 C -0.226 4.226 22 C -0.092 4.092 23 N -0.109 5.109 24 H 0.265 0.735 25 C -0.080 4.080 26 C -0.147 4.147 27 C -0.090 4.090 28 C -0.180 4.180 29 H 0.142 0.858 30 C 0.024 3.976 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.021 0.979 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.246 0.754 37 H 0.155 0.845 38 H 0.109 0.891 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.122 0.878 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.047 0.953 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.868 -27.568 4.389 28.182 hybrid contribution 0.372 1.950 0.281 2.005 sum -3.496 -25.618 4.670 26.274 Atomic orbital electron populations 1.70088 1.06499 1.25725 1.57182 1.25749 0.96533 1.01319 1.02153 0.85042 0.77916 0.78927 0.77327 1.21431 1.22011 1.19029 1.19391 0.91327 0.83650 1.42534 0.90150 1.45531 1.13783 1.01254 1.73934 1.20800 0.86018 0.93666 0.93177 1.23933 1.04491 0.91244 0.99909 0.86863 1.22389 0.98174 0.92028 1.00263 0.87139 1.20726 1.01316 0.81627 0.92277 1.45720 1.70516 1.08987 1.11098 1.17183 0.76184 0.82089 0.86622 1.90823 1.54454 1.85284 1.14812 1.19941 1.19319 0.95925 0.82630 1.20853 1.02556 0.90711 0.99089 1.20727 1.10843 0.98585 0.92400 1.21977 1.02876 0.84245 1.00147 1.41288 1.53564 1.10508 1.05523 0.73461 1.20925 1.04098 0.91685 0.91245 1.22376 1.02944 0.94857 0.94486 1.20601 1.01407 0.89917 0.97075 1.23942 0.90512 1.02179 1.01375 0.85848 1.21291 0.97723 0.84264 0.94344 0.94117 0.92904 0.97873 0.91103 0.91012 0.75420 0.84542 0.89095 0.88297 0.90267 0.87784 0.90242 0.90991 0.95306 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.80 10.86 21.65 0.24 -56.56 16 2 C -0.06 -3.62 5.40 84.86 0.46 -3.16 16 3 Si 0.98 45.41 29.56 68.60 2.03 47.44 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.24 -13.42 10.35 84.04 0.87 -12.55 16 8 H 0.08 4.30 7.84 -2.91 -0.02 4.27 16 9 N -0.62 -31.76 3.38 -688.14 -2.33 -34.08 16 10 C 0.19 9.17 5.70 86.53 0.49 9.66 16 11 C -0.18 -6.40 6.85 -9.88 -0.07 -6.47 16 12 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 13 C -0.11 -3.05 5.39 -10.80 -0.06 -3.11 16 14 H 0.11 2.95 8.04 -2.38 -0.02 2.94 16 15 C 0.16 4.10 5.95 86.38 0.51 4.62 16 16 N -0.71 -15.53 5.55 -467.09 -2.59 -18.12 16 17 C 0.59 15.75 7.79 86.45 0.67 16.42 16 18 O -0.57 -19.90 16.88 -4.34 -0.07 -19.98 16 19 C -0.07 -1.51 7.05 40.34 0.28 -1.22 16 20 C -0.10 -2.47 10.66 22.61 0.24 -2.23 16 21 C -0.22 -4.05 6.89 -19.87 -0.14 -4.19 16 22 C 0.03 0.41 8.01 41.49 0.33 0.74 16 23 N -0.51 -8.20 6.00 -171.10 -1.03 -9.23 16 24 H 0.43 4.31 8.18 -92.71 -0.76 3.55 16 25 C -0.04 -0.31 6.79 30.58 0.21 -0.11 16 26 C -0.11 -0.68 7.12 31.55 0.22 -0.46 16 27 C -0.05 -0.60 6.79 30.54 0.21 -0.40 16 28 C -0.16 -5.22 6.74 -9.89 -0.07 -5.29 16 29 H 0.12 3.60 8.12 -2.39 -0.02 3.58 16 30 C 0.15 5.92 7.04 86.53 0.61 6.53 16 31 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 32 H 0.05 2.94 6.51 -2.39 -0.02 2.92 16 33 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.07 1.85 7.94 -2.39 -0.02 1.83 16 35 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.41 6.51 7.53 -92.70 -0.70 5.81 16 37 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 38 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 39 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -74.33 368.16 0.59 -73.74 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -0.44 Total: 17.99 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 4.79 Total: -1.21 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -5.71 Total: -117.99 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.07 Total: -19.98 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -74.33 0.59 -73.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978947538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.742 kcal (2) G-P(sol) polarization free energy of solvation -74.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds