Wall clock time and date at job start Tue Mar 31 2020 11:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99376 * 2 1 4 4 H 1.48497 * 109.47051 * 264.98799 * 3 2 1 5 5 H 1.48493 * 109.47417 * 24.99056 * 3 2 1 6 6 H 1.48507 * 109.47092 * 144.99334 * 3 2 1 7 7 C 1.38804 * 120.00389 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00518 * 200.42630 * 7 2 1 9 9 N 1.36938 * 119.99891 * 20.43033 * 7 2 1 10 10 C 1.43467 * 118.93874 * 204.65503 * 9 7 2 11 11 C 1.53792 * 107.95712 * 273.60483 * 10 9 7 12 12 C 1.47132 * 111.84428 * 281.66651 * 11 10 9 13 13 N 1.48210 * 110.34397 * 58.29765 * 12 11 10 14 14 C 1.34776 * 119.97076 * 102.46886 * 13 12 11 15 15 O 1.21285 * 119.99980 * 182.17580 * 14 13 12 16 16 C 1.50696 * 120.00125 * 2.17735 * 14 13 12 17 17 H 1.08997 * 110.26356 * 28.70524 * 16 14 13 18 18 C 1.54334 * 110.29866 * 150.76299 * 16 14 13 19 19 C 1.54371 * 102.38797 * 92.59077 * 18 16 14 20 20 C 1.51222 * 105.11676 * 26.30075 * 19 18 16 21 21 C 1.38748 * 130.69050 * 162.82608 * 20 19 18 22 22 C 1.38572 * 118.55179 * 179.97438 * 21 20 19 23 23 C 1.38223 * 118.99563 * 0.04081 * 22 21 20 24 24 N 1.31692 * 120.80111 * 359.97365 * 23 22 21 25 25 C 1.32298 * 122.02547 * 359.97438 * 24 23 22 26 26 C 1.43627 * 120.05955 * 282.49492 * 13 12 11 27 27 C 1.48856 * 118.94209 * 24.37933 * 9 7 2 28 28 H 0.96998 * 120.00790 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.76422 * 33.22326 * 10 9 7 30 30 H 1.09005 * 109.76463 * 153.93624 * 10 9 7 31 31 H 1.09005 * 109.00770 * 42.27904 * 11 10 9 32 32 H 1.09009 * 109.00813 * 161.05778 * 11 10 9 33 33 H 1.09003 * 109.32963 * 178.56761 * 12 11 10 34 34 H 1.09003 * 109.32859 * 298.20880 * 12 11 10 35 35 H 1.08998 * 110.82493 * 210.82018 * 18 16 14 36 36 H 1.09002 * 110.82002 * 334.16918 * 18 16 14 37 37 H 1.08998 * 110.30903 * 145.21105 * 19 18 16 38 38 H 1.08995 * 110.31442 * 267.38654 * 19 18 16 39 39 H 1.07997 * 120.72019 * 0.02562 * 21 20 19 40 40 H 1.08009 * 120.49974 * 180.02562 * 22 21 20 41 41 H 1.07998 * 119.60206 * 179.97438 * 23 22 21 42 42 H 1.09009 * 108.87010 * 211.44350 * 26 13 12 43 43 H 1.09003 * 108.87390 * 329.87942 * 26 13 12 44 44 H 1.09000 * 109.48064 * 260.63126 * 27 9 7 45 45 H 1.09002 * 109.48087 * 20.66328 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.6034 1.9854 -1.3947 5 1 1.3985 2.6809 0.5914 6 1 3.4907 1.4732 0.8032 7 6 2.0103 -1.2020 -0.0005 8 1 3.0393 -1.2316 0.3258 9 7 1.3903 -2.3505 -0.4150 10 6 1.8748 -3.6129 0.0645 11 6 3.0117 -4.0686 -0.8655 12 6 2.4973 -4.6365 -2.1215 13 7 1.6581 -3.6419 -2.8309 14 6 2.1569 -2.9724 -3.8890 15 8 1.4846 -2.1302 -4.4455 16 6 3.5499 -3.2703 -4.3806 17 1 3.8144 -4.3048 -4.1616 18 6 3.6515 -3.0013 -5.8969 19 6 4.1420 -1.5383 -5.9416 20 6 4.8837 -1.3311 -4.6402 21 6 5.7888 -0.3502 -4.2611 22 6 6.3252 -0.4016 -2.9844 23 6 5.9419 -1.4245 -2.1374 24 7 5.0802 -2.3391 -2.5313 25 6 4.5453 -2.3242 -3.7412 26 6 0.3139 -3.3906 -2.3916 27 6 0.2314 -2.2486 -1.3437 28 1 -0.4851 0.8400 0.0004 29 1 2.2524 -3.5007 1.0809 30 1 1.0689 -4.3467 0.0498 31 1 3.6462 -3.2128 -1.0963 32 1 3.6087 -4.8232 -0.3530 33 1 3.3347 -4.9216 -2.7583 34 1 1.8965 -5.5185 -1.8993 35 1 4.3783 -3.6681 -6.3609 36 1 2.6766 -3.1011 -6.3743 37 1 4.8132 -1.3900 -6.7875 38 1 3.2939 -0.8567 -6.0065 39 1 6.0685 0.4367 -4.9458 40 1 7.0321 0.3461 -2.6563 41 1 6.3541 -1.4743 -1.1404 42 1 -0.2948 -3.1219 -3.2551 43 1 -0.0884 -4.3017 -1.9487 44 1 -0.6963 -2.3361 -0.7782 45 1 0.2574 -1.2852 -1.8530 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981836226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:13 Heat of formation + Delta-G solvation = 22.666105 kcal Electronic energy + Delta-G solvation = -28567.874513 eV Core-core repulsion = 24971.541899 eV Total energy + Delta-G solvation = -3596.332614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.16159 -40.63455 -38.70394 -36.79788 -36.07314 -33.90290 -33.66373 -32.75679 -30.44616 -29.90719 -28.58671 -27.07820 -25.52026 -24.47041 -24.08453 -22.78058 -21.96047 -21.40779 -19.76897 -18.84566 -18.28861 -17.70711 -17.25034 -17.15441 -16.56987 -16.27209 -15.97622 -15.54554 -15.50722 -15.10572 -14.83223 -14.52048 -14.37027 -14.21114 -13.94820 -13.84105 -13.79454 -13.32808 -13.09765 -12.92591 -12.89734 -12.66940 -12.51971 -12.30604 -12.20442 -12.11490 -12.00843 -11.74230 -11.63912 -11.33287 -10.91209 -10.59676 -10.50926 -10.13701 -9.59415 -9.50549 -8.67143 -7.87947 -5.26473 0.12516 0.37701 1.31080 1.36279 1.41418 1.62583 2.21654 2.46462 2.84900 3.00274 3.25292 3.46790 3.58443 3.72696 3.78691 3.99268 4.00188 4.08158 4.24714 4.30379 4.31721 4.36485 4.46666 4.55807 4.57390 4.65942 4.73023 4.80432 4.84681 4.88057 4.94232 4.98779 5.04210 5.14412 5.17665 5.24489 5.31035 5.32729 5.34360 5.54647 5.65533 5.72895 5.80944 6.02151 6.38036 6.54311 7.06795 7.15115 7.29183 7.95209 8.35901 9.17196 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.011225 B = 0.007594 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.749085 B = 3686.176704 C = 4710.073929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.052 4.052 3 Si 0.943 3.057 4 H -0.303 1.303 5 H -0.293 1.293 6 H -0.262 1.262 7 C -0.237 4.237 8 H 0.058 0.942 9 N -0.598 5.598 10 C 0.156 3.844 11 C -0.174 4.174 12 C 0.123 3.877 13 N -0.581 5.581 14 C 0.519 3.481 15 O -0.585 6.585 16 C -0.056 4.056 17 H 0.131 0.869 18 C -0.093 4.093 19 C -0.074 4.074 20 C -0.154 4.154 21 C -0.079 4.079 22 C -0.169 4.169 23 C 0.083 3.917 24 N -0.476 5.476 25 C 0.104 3.896 26 C 0.103 3.897 27 C 0.181 3.819 28 H 0.244 0.756 29 H 0.032 0.968 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.157 0.843 40 H 0.165 0.835 41 H 0.170 0.830 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.015 0.985 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.971 -10.384 -10.830 19.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.247 4.247 3 Si 0.773 3.227 4 H -0.232 1.232 5 H -0.220 1.220 6 H -0.186 1.186 7 C -0.368 4.368 8 H 0.075 0.925 9 N -0.320 5.320 10 C 0.029 3.971 11 C -0.214 4.214 12 C 0.002 3.998 13 N -0.311 5.311 14 C 0.307 3.693 15 O -0.466 6.466 16 C -0.078 4.078 17 H 0.148 0.852 18 C -0.131 4.131 19 C -0.111 4.111 20 C -0.156 4.156 21 C -0.105 4.105 22 C -0.189 4.189 23 C -0.075 4.075 24 N -0.184 5.184 25 C -0.033 4.033 26 C -0.022 4.022 27 C 0.054 3.946 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.136 0.864 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.082 0.918 39 H 0.175 0.825 40 H 0.182 0.818 41 H 0.187 0.813 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.033 0.967 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 12.266 -10.548 -10.477 19.274 hybrid contribution 0.045 2.329 0.108 2.332 sum 12.311 -8.218 -10.369 18.073 Atomic orbital electron populations 1.70184 1.06292 1.25160 1.56392 1.25511 0.95810 1.00819 1.02567 0.85617 0.78916 0.81328 0.76871 1.23167 1.21993 1.18615 1.19245 0.93547 0.87105 1.36913 0.92473 1.43826 1.35339 1.02040 1.50805 1.20493 0.94871 0.86615 0.95074 1.21870 1.00092 1.02579 0.96890 1.21015 0.94972 0.89992 0.93797 1.47558 1.14130 1.40455 1.28912 1.20712 0.88375 0.80166 0.80037 1.90633 1.62004 1.34042 1.59906 1.20856 0.88594 1.00970 0.97356 0.85171 1.22282 1.03535 0.96413 0.90878 1.20970 0.98656 0.97572 0.93919 1.21819 0.98033 0.96339 0.99393 1.21423 0.94618 0.97447 0.96984 1.22427 1.01960 1.00133 0.94343 1.23007 0.93358 0.90597 1.00514 1.66695 1.08251 1.27736 1.15766 1.21401 0.95676 0.96258 0.89993 1.21683 0.83694 0.99363 0.97489 1.21509 0.88744 0.95318 0.88989 0.94667 0.94938 0.93415 0.90502 0.89875 0.88508 0.89067 0.86439 0.89815 0.87300 0.91781 0.82510 0.81778 0.81282 0.91985 0.89192 0.96725 0.96369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.89 11.25 21.65 0.24 -58.64 16 2 C -0.05 -3.13 4.79 84.86 0.41 -2.72 16 3 Si 0.94 48.84 29.60 68.60 2.03 50.87 16 4 H -0.30 -16.23 7.11 99.48 0.71 -15.52 16 5 H -0.29 -15.11 7.11 99.48 0.71 -14.40 16 6 H -0.26 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.24 -13.65 9.24 84.03 0.78 -12.87 16 8 H 0.06 3.29 7.91 -2.91 -0.02 3.27 16 9 N -0.60 -30.55 2.53 -697.40 -1.76 -32.31 16 10 C 0.16 6.33 5.63 87.21 0.49 6.83 16 11 C -0.17 -5.76 5.64 29.04 0.16 -5.60 16 12 C 0.12 3.44 5.60 84.23 0.47 3.91 16 13 N -0.58 -20.99 2.46 -830.49 -2.04 -23.03 16 14 C 0.52 19.77 6.70 87.66 0.59 20.35 16 15 O -0.59 -27.21 15.44 -3.05 -0.05 -27.26 16 16 C -0.06 -1.62 2.62 -11.59 -0.03 -1.65 16 17 H 0.13 2.97 5.85 -2.39 -0.01 2.95 16 18 C -0.09 -2.10 6.29 31.51 0.20 -1.91 16 19 C -0.07 -1.85 6.52 30.48 0.20 -1.65 16 20 C -0.15 -4.57 6.16 -19.59 -0.12 -4.69 16 21 C -0.08 -2.08 10.17 22.47 0.23 -1.85 16 22 C -0.17 -4.37 10.12 22.35 0.23 -4.14 16 23 C 0.08 2.48 11.18 84.71 0.95 3.42 16 24 N -0.48 -16.18 8.13 -182.98 -1.49 -17.67 16 25 C 0.10 3.41 6.61 42.72 0.28 3.69 16 26 C 0.10 4.12 5.24 87.67 0.46 4.58 16 27 C 0.18 9.32 5.24 86.68 0.45 9.78 16 28 H 0.24 15.14 8.31 -92.71 -0.77 14.37 16 29 H 0.03 1.37 8.02 -2.38 -0.02 1.35 16 30 H 0.05 1.75 7.59 -2.38 -0.02 1.73 16 31 H 0.08 3.03 5.55 -2.38 -0.01 3.02 16 32 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.10 2.25 5.38 -2.39 -0.01 2.24 16 34 H 0.09 2.04 8.05 -2.39 -0.02 2.02 16 35 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.08 2.00 7.57 -2.39 -0.02 1.98 16 37 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.06 1.97 8.09 -2.39 -0.02 1.95 16 39 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 40 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 41 H 0.17 4.31 8.06 -2.91 -0.02 4.29 16 42 H 0.06 2.56 7.40 -2.38 -0.02 2.54 16 43 H 0.09 2.97 7.73 -2.39 -0.02 2.95 16 44 H 0.01 0.81 8.02 -2.39 -0.02 0.79 16 45 H 0.02 1.10 6.64 -2.39 -0.02 1.09 16 Total: -1.00 -79.57 349.19 3.67 -75.91 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.99 Total: 16.65 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 5.74 Total: 15.48 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -5.05 Total: -131.65 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.26 kcal Atomic # 14 Polarization: 48.84 SS G_CDS: 2.03 Total: 50.87 kcal Total: -79.57 3.67 -75.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981836226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.573 kcal (2) G-P(sol) polarization free energy of solvation -79.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds