Wall clock time and date at job start Tue Mar 31 2020 11:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99698 * 2 1 4 4 H 1.48505 * 109.46760 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47345 * 299.99234 * 3 2 1 6 6 H 1.48501 * 109.47434 * 59.99803 * 3 2 1 7 7 C 1.38804 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00173 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99889 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.46100 * 154.99900 * 10 9 7 12 12 C 1.53189 * 109.31718 * 181.36943 * 11 10 9 13 13 N 1.46928 * 108.77445 * 305.36786 * 12 11 10 14 14 C 1.34783 * 120.62772 * 233.58047 * 13 12 11 15 15 O 1.21278 * 119.99831 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99664 * 179.97438 * 14 13 12 17 17 H 1.08996 * 110.26382 * 57.94970 * 16 14 13 18 18 C 1.54336 * 110.29160 * 180.02562 * 16 14 13 19 19 C 1.54371 * 102.57041 * 145.17697 * 18 16 14 20 20 C 1.51535 * 104.96529 * 333.95015 * 19 18 16 21 21 C 1.38739 * 130.60950 * 197.05221 * 20 19 18 22 22 C 1.38577 * 118.56011 * 179.78727 * 21 20 19 23 23 C 1.38221 * 118.98716 * 359.97438 * 22 21 20 24 24 N 1.31691 * 120.80418 * 0.02562 * 23 22 21 25 25 C 1.32299 * 122.03047 * 0.02562 * 24 23 22 26 26 C 1.46921 * 118.74002 * 53.85497 * 13 12 11 27 27 C 1.53039 * 109.44786 * 275.05617 * 10 9 7 28 28 H 0.97003 * 119.99948 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99924 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46248 * 35.02626 * 10 9 7 31 31 H 1.09001 * 109.49765 * 61.41673 * 11 10 9 32 32 H 1.09004 * 109.52204 * 301.33838 * 11 10 9 33 33 H 1.09002 * 109.59405 * 185.57671 * 12 11 10 34 34 H 1.09006 * 109.70005 * 65.21864 * 12 11 10 35 35 H 1.09002 * 110.82196 * 263.50138 * 18 16 14 36 36 H 1.09005 * 110.82489 * 26.85645 * 18 16 14 37 37 H 1.09000 * 110.30964 * 92.71097 * 19 18 16 38 38 H 1.08996 * 110.31462 * 214.89295 * 19 18 16 39 39 H 1.08010 * 120.72352 * 359.76130 * 21 20 19 40 40 H 1.08003 * 120.51146 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.60147 * 180.02562 * 23 22 21 42 42 H 1.09004 * 109.58726 * 65.93350 * 26 13 12 43 43 H 1.08999 * 109.58809 * 186.35229 * 26 13 12 44 44 H 1.08997 * 109.50136 * 298.57227 * 27 10 9 45 45 H 1.09007 * 109.49504 * 58.64191 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.1805 -4.7522 0.6104 12 6 1.9618 -6.0695 0.6401 13 7 2.4410 -6.3658 -0.7168 14 6 2.1729 -7.5530 -1.2958 15 8 1.5300 -8.3886 -0.6963 16 6 2.6709 -7.8417 -2.6885 17 1 3.7561 -7.7482 -2.7283 18 6 2.2386 -9.2562 -3.1291 19 6 1.9815 -9.0736 -4.6403 20 6 1.6319 -7.6082 -4.8034 21 6 1.0135 -6.9383 -5.8492 22 6 0.8093 -5.5726 -5.7327 23 6 1.2267 -4.9286 -4.5831 24 7 1.8106 -5.5967 -3.6100 25 6 2.0243 -6.9003 -3.6836 26 6 3.2233 -5.3457 -1.4282 27 6 2.4230 -4.0344 -1.4369 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 2.9685 -3.5504 0.5904 31 1 0.2813 -4.8761 0.0068 32 1 0.9011 -4.4719 1.6260 33 1 1.3097 -6.8737 0.9811 34 1 2.8121 -5.9772 1.3159 35 1 3.0377 -9.9771 -2.9563 36 1 1.3267 -9.5605 -2.6151 37 1 2.8804 -9.3126 -5.2085 38 1 1.1513 -9.7024 -4.9616 39 1 0.6984 -7.4696 -6.7352 40 1 0.3306 -5.0199 -6.5275 41 1 1.0722 -3.8646 -4.4816 42 1 4.1745 -5.1932 -0.9183 43 1 3.4037 -5.6721 -2.4524 44 1 1.5122 -4.1651 -2.0212 45 1 3.0281 -3.2426 -1.8786 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996922743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:53 Heat of formation + Delta-G solvation = 27.058518 kcal Electronic energy + Delta-G solvation = -27181.018170 eV Core-core repulsion = 23584.876025 eV Total energy + Delta-G solvation = -3596.142145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30625 -39.45866 -37.48142 -35.96003 -34.40919 -33.02090 -31.89691 -30.53897 -29.47998 -29.27602 -28.20761 -24.81894 -23.61968 -22.97001 -22.81945 -21.98124 -21.39051 -19.78191 -18.72220 -17.29593 -17.00117 -16.76737 -16.57026 -15.73109 -15.31754 -14.79207 -14.58005 -14.54411 -13.81799 -13.70442 -13.61993 -13.52975 -13.36957 -13.23772 -12.79996 -12.57817 -12.28391 -12.02168 -11.90202 -11.78166 -11.55891 -11.35878 -11.23524 -10.88576 -10.75270 -10.63059 -10.32227 -10.13978 -9.83421 -9.77012 -9.63098 -9.57139 -9.14409 -8.84496 -8.80378 -8.29487 -6.88557 -5.72226 -3.00017 0.95360 1.16801 2.70672 3.21890 3.44646 3.50456 3.52561 3.68520 3.81661 4.15290 4.47623 4.62412 4.68648 4.69714 4.80771 4.99301 5.06046 5.20306 5.28529 5.37878 5.42259 5.45969 5.51499 5.57598 5.63334 5.65766 5.70591 5.75690 5.85837 5.94723 6.00607 6.02759 6.07241 6.10555 6.20637 6.39224 6.53711 6.60678 6.66365 6.71480 6.86718 7.11052 7.36504 7.68333 7.74461 7.91825 8.33121 8.46586 9.57541 10.17371 10.52184 11.50701 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016717 B = 0.004002 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.557051 B = 6993.977731 C = 8149.474909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.903 3.097 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.232 4.232 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.175 3.825 11 C -0.136 4.136 12 C 0.116 3.884 13 N -0.592 5.592 14 C 0.525 3.475 15 O -0.553 6.553 16 C -0.058 4.058 17 H 0.116 0.884 18 C -0.104 4.104 19 C -0.077 4.077 20 C -0.146 4.146 21 C -0.067 4.067 22 C -0.169 4.169 23 C 0.108 3.892 24 N -0.452 5.452 25 C 0.118 3.882 26 C 0.113 3.887 27 C -0.133 4.133 28 H 0.253 0.747 29 H 0.382 0.618 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.163 0.837 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.078 0.922 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.549 -18.444 -11.689 22.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.735 3.265 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.363 4.363 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.065 3.935 11 C -0.175 4.175 12 C -0.007 4.007 13 N -0.323 5.323 14 C 0.312 3.688 15 O -0.432 6.432 16 C -0.080 4.080 17 H 0.134 0.866 18 C -0.142 4.142 19 C -0.115 4.115 20 C -0.148 4.148 21 C -0.093 4.093 22 C -0.189 4.189 23 C -0.049 4.049 24 N -0.161 5.161 25 C -0.020 4.020 26 C -0.010 4.010 27 C -0.174 4.174 28 H 0.063 0.937 29 H 0.216 0.784 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.149 0.851 40 H 0.155 0.845 41 H 0.180 0.820 42 H 0.069 0.931 43 H 0.109 0.891 44 H 0.096 0.904 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.606 -18.245 -10.594 21.830 hybrid contribution -0.138 0.900 -0.920 1.295 sum 5.468 -17.345 -11.514 21.525 Atomic orbital electron populations 1.69677 1.05074 1.25343 1.58190 1.24711 0.95457 0.97542 1.03394 0.86164 0.78790 0.84421 0.77124 1.20618 1.21998 1.22000 1.19284 0.90956 0.84156 1.41944 0.91230 1.42430 1.05729 0.99760 1.88574 1.20257 0.94019 0.85822 0.93387 1.22161 0.99218 0.94263 1.01822 1.21605 0.98596 0.98037 0.82464 1.48060 1.53064 1.14682 1.16460 1.20104 0.79840 0.81785 0.87113 1.90644 1.41038 1.46574 1.64938 1.20854 1.01431 0.94529 0.91202 0.86617 1.22292 1.03819 0.93739 0.94360 1.21048 1.02058 0.91452 0.96943 1.21440 1.00048 0.97637 0.95678 1.21035 0.96279 0.94165 0.97810 1.22139 1.01753 0.94967 1.00025 1.22883 0.92897 1.00643 0.88457 1.67374 1.12281 1.07436 1.28975 1.21368 0.96452 0.90252 0.93916 1.22082 0.93006 0.89147 0.96724 1.22611 1.00986 0.93780 1.00053 0.93695 0.78411 0.93996 0.92078 0.90956 0.89701 0.91731 0.89611 0.88771 0.89806 0.90106 0.85131 0.84529 0.81959 0.93115 0.89070 0.90379 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.90 22.36 29.55 -169.99 -5.02 17.34 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 7 C -0.23 -6.40 9.93 -15.06 -0.15 -6.55 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -18.22 5.12 -53.39 -0.27 -18.49 16 10 C 0.18 3.52 2.73 -67.89 -0.19 3.33 16 11 C -0.14 -2.42 5.55 -26.61 -0.15 -2.56 16 12 C 0.12 1.81 6.43 -3.71 -0.02 1.79 16 13 N -0.59 -9.07 2.97 -172.50 -0.51 -9.58 16 14 C 0.52 7.99 7.09 -10.98 -0.08 7.91 16 15 O -0.55 -9.85 14.90 5.56 0.08 -9.77 16 16 C -0.06 -0.68 2.36 -91.84 -0.22 -0.90 16 17 H 0.12 1.13 7.85 -51.93 -0.41 0.72 16 18 C -0.10 -1.00 6.34 -25.31 -0.16 -1.16 16 19 C -0.08 -0.62 6.80 -26.75 -0.18 -0.80 16 20 C -0.15 -1.54 6.16 -104.05 -0.64 -2.19 16 21 C -0.07 -0.64 10.17 -39.27 -0.40 -1.04 16 22 C -0.17 -1.69 10.12 -39.46 -0.40 -2.09 16 23 C 0.11 1.35 10.94 -17.62 -0.19 1.16 16 24 N -0.45 -6.33 5.04 -9.19 -0.05 -6.37 16 25 C 0.12 1.49 5.87 -82.03 -0.48 1.01 16 26 C 0.11 1.68 5.40 -3.49 -0.02 1.66 16 27 C -0.13 -2.40 5.05 -26.39 -0.13 -2.53 16 28 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.38 10.36 7.80 -40.82 -0.32 10.04 16 30 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.36 7.01 -51.93 -0.36 1.00 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 1.09 7.01 -51.93 -0.36 0.73 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.16 1.95 8.06 -52.49 -0.42 1.52 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.26 3.98 -51.93 -0.21 1.05 16 44 H 0.08 1.49 6.16 -51.93 -0.32 1.17 16 45 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -32.96 351.73 -9.85 -42.81 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -6.60 Total: 9.82 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -3.51 Total: -3.50 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: -0.11 Total: -62.00 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.96 -9.85 -42.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996922743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.867 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds