Wall clock time and date at job start Tue Mar 31 2020 11:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99698 * 2 1 4 4 H 1.48505 * 109.46760 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47345 * 299.99234 * 3 2 1 6 6 H 1.48501 * 109.47434 * 59.99803 * 3 2 1 7 7 C 1.38804 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00173 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99915 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99889 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.46100 * 154.99900 * 10 9 7 12 12 C 1.53189 * 109.31718 * 181.36943 * 11 10 9 13 13 N 1.46928 * 108.77445 * 305.36786 * 12 11 10 14 14 C 1.34783 * 120.62772 * 233.58047 * 13 12 11 15 15 O 1.21278 * 119.99831 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99664 * 179.97438 * 14 13 12 17 17 H 1.08996 * 110.26382 * 57.94970 * 16 14 13 18 18 C 1.54336 * 110.29160 * 180.02562 * 16 14 13 19 19 C 1.54371 * 102.57041 * 145.17697 * 18 16 14 20 20 C 1.51535 * 104.96529 * 333.95015 * 19 18 16 21 21 C 1.38739 * 130.60950 * 197.05221 * 20 19 18 22 22 C 1.38577 * 118.56011 * 179.78727 * 21 20 19 23 23 C 1.38221 * 118.98716 * 359.97438 * 22 21 20 24 24 N 1.31691 * 120.80418 * 0.02562 * 23 22 21 25 25 C 1.32299 * 122.03047 * 0.02562 * 24 23 22 26 26 C 1.46921 * 118.74002 * 53.85497 * 13 12 11 27 27 C 1.53039 * 109.44786 * 275.05617 * 10 9 7 28 28 H 0.97003 * 119.99948 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99924 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46248 * 35.02626 * 10 9 7 31 31 H 1.09001 * 109.49765 * 61.41673 * 11 10 9 32 32 H 1.09004 * 109.52204 * 301.33838 * 11 10 9 33 33 H 1.09002 * 109.59405 * 185.57671 * 12 11 10 34 34 H 1.09006 * 109.70005 * 65.21864 * 12 11 10 35 35 H 1.09002 * 110.82196 * 263.50138 * 18 16 14 36 36 H 1.09005 * 110.82489 * 26.85645 * 18 16 14 37 37 H 1.09000 * 110.30964 * 92.71097 * 19 18 16 38 38 H 1.08996 * 110.31462 * 214.89295 * 19 18 16 39 39 H 1.08010 * 120.72352 * 359.76130 * 21 20 19 40 40 H 1.08003 * 120.51146 * 180.02562 * 22 21 20 41 41 H 1.08000 * 119.60147 * 180.02562 * 23 22 21 42 42 H 1.09004 * 109.58726 * 65.93350 * 26 13 12 43 43 H 1.08999 * 109.58809 * 186.35229 * 26 13 12 44 44 H 1.08997 * 109.50136 * 298.57227 * 27 10 9 45 45 H 1.09007 * 109.49504 * 58.64191 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6567 0.0005 11 6 1.1805 -4.7522 0.6104 12 6 1.9618 -6.0695 0.6401 13 7 2.4410 -6.3658 -0.7168 14 6 2.1729 -7.5530 -1.2958 15 8 1.5300 -8.3886 -0.6963 16 6 2.6709 -7.8417 -2.6885 17 1 3.7561 -7.7482 -2.7283 18 6 2.2386 -9.2562 -3.1291 19 6 1.9815 -9.0736 -4.6403 20 6 1.6319 -7.6082 -4.8034 21 6 1.0135 -6.9383 -5.8492 22 6 0.8093 -5.5726 -5.7327 23 6 1.2267 -4.9286 -4.5831 24 7 1.8106 -5.5967 -3.6100 25 6 2.0243 -6.9003 -3.6836 26 6 3.2233 -5.3457 -1.4282 27 6 2.4230 -4.0344 -1.4369 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 2.9685 -3.5504 0.5904 31 1 0.2813 -4.8761 0.0068 32 1 0.9011 -4.4719 1.6260 33 1 1.3097 -6.8737 0.9811 34 1 2.8121 -5.9772 1.3159 35 1 3.0377 -9.9771 -2.9563 36 1 1.3267 -9.5605 -2.6151 37 1 2.8804 -9.3126 -5.2085 38 1 1.1513 -9.7024 -4.9616 39 1 0.6984 -7.4696 -6.7352 40 1 0.3306 -5.0199 -6.5275 41 1 1.0722 -3.8646 -4.4816 42 1 4.1745 -5.1932 -0.9183 43 1 3.4037 -5.6721 -2.4524 44 1 1.5122 -4.1651 -2.0212 45 1 3.0281 -3.2426 -1.8786 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996922743.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:52 Heat of formation + Delta-G solvation = 7.405556 kcal Electronic energy + Delta-G solvation = -27181.870386 eV Core-core repulsion = 23584.876025 eV Total energy + Delta-G solvation = -3596.994361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.24148 -40.59009 -38.85592 -36.88951 -36.12025 -34.09538 -33.56079 -31.88732 -30.99704 -30.28257 -29.20584 -26.52141 -24.57481 -24.42118 -24.16412 -23.04553 -22.37183 -21.15910 -19.94642 -19.05417 -18.41036 -17.67343 -17.50604 -16.84692 -16.67611 -16.24760 -15.65105 -15.61259 -15.41858 -15.32426 -14.88032 -14.64646 -14.62756 -14.36236 -13.87064 -13.76622 -13.47619 -13.33399 -13.04888 -12.90325 -12.86415 -12.60858 -12.50643 -12.44797 -12.10432 -12.06661 -11.94788 -11.89854 -11.65862 -11.25174 -11.01854 -10.78802 -10.58769 -10.07565 -9.66606 -9.58559 -8.96079 -7.91111 -5.19248 0.11993 0.37034 1.47957 1.48586 1.54513 1.58598 2.05918 2.58020 2.82112 2.95988 3.36885 3.42465 3.51783 3.85096 3.89084 3.92976 4.01306 4.11367 4.17776 4.20777 4.27477 4.31617 4.43559 4.47626 4.49241 4.61073 4.65623 4.69327 4.82150 4.83601 4.92041 4.98463 5.01441 5.09387 5.12381 5.22318 5.25397 5.28835 5.32201 5.36550 5.53809 5.68006 5.72242 5.88812 6.30643 6.46420 7.03990 7.13662 7.36217 8.12343 8.36524 9.32979 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016717 B = 0.004002 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.557051 B = 6993.977731 C = 8149.474909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.077 4.077 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.295 1.295 6 H -0.296 1.296 7 C -0.230 4.230 8 H 0.076 0.924 9 N -0.737 5.737 10 C 0.171 3.829 11 C -0.123 4.123 12 C 0.121 3.879 13 N -0.595 5.595 14 C 0.519 3.481 15 O -0.583 6.583 16 C -0.056 4.056 17 H 0.138 0.862 18 C -0.101 4.101 19 C -0.069 4.069 20 C -0.145 4.145 21 C -0.067 4.067 22 C -0.162 4.162 23 C 0.079 3.921 24 N -0.482 5.482 25 C 0.089 3.911 26 C 0.125 3.875 27 C -0.118 4.118 28 H 0.249 0.751 29 H 0.369 0.631 30 H 0.042 0.958 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.165 0.835 40 H 0.161 0.839 41 H 0.152 0.848 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.063 0.937 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.367 -20.216 -13.410 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.269 4.269 3 Si 0.799 3.201 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.224 1.224 7 C -0.362 4.362 8 H 0.094 0.906 9 N -0.376 5.376 10 C 0.063 3.937 11 C -0.162 4.162 12 C -0.002 4.002 13 N -0.326 5.326 14 C 0.308 3.692 15 O -0.464 6.464 16 C -0.077 4.077 17 H 0.156 0.844 18 C -0.139 4.139 19 C -0.106 4.106 20 C -0.147 4.147 21 C -0.093 4.093 22 C -0.181 4.181 23 C -0.077 4.077 24 N -0.191 5.191 25 C -0.049 4.049 26 C 0.003 3.997 27 C -0.159 4.159 28 H 0.058 0.942 29 H 0.200 0.800 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.129 0.871 36 H 0.088 0.912 37 H 0.129 0.871 38 H 0.114 0.886 39 H 0.182 0.818 40 H 0.179 0.821 41 H 0.169 0.831 42 H 0.085 0.915 43 H 0.124 0.876 44 H 0.082 0.918 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.471 -20.051 -12.327 24.694 hybrid contribution -0.740 1.389 -0.395 1.623 sum 6.730 -18.662 -12.722 23.567 Atomic orbital electron populations 1.69840 1.06672 1.25723 1.60177 1.25507 0.96272 1.00913 1.04219 0.85115 0.78341 0.80095 0.76499 1.18917 1.22192 1.22371 1.19646 0.91366 0.85104 1.40098 0.90592 1.42637 1.05236 1.01034 1.88678 1.20482 0.93809 0.84549 0.94888 1.22001 0.98353 0.94894 1.00987 1.21514 0.98973 0.96227 0.83452 1.48134 1.53129 1.15078 1.16271 1.20787 0.79044 0.81082 0.88263 1.90626 1.42286 1.47436 1.66044 1.20995 1.02600 0.95676 0.88445 0.84413 1.22315 1.03510 0.92792 0.95259 1.21107 1.03842 0.89766 0.95877 1.21824 0.98885 0.98925 0.95043 1.21435 0.95319 0.93894 0.98639 1.22389 1.00636 0.95644 0.99466 1.22903 0.94547 1.00573 0.89704 1.67200 1.13361 1.08559 1.29999 1.21596 0.97895 0.90116 0.95267 1.21989 0.92653 0.87157 0.97948 1.22345 1.00606 0.95196 0.97747 0.94249 0.80031 0.93961 0.94022 0.91181 0.90045 0.89732 0.87109 0.91235 0.87064 0.88568 0.81777 0.82124 0.83058 0.91493 0.87567 0.91837 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.49 13.06 21.65 0.28 -60.21 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 3 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 7 C -0.23 -12.86 9.93 84.03 0.83 -12.03 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.74 -38.11 5.12 -322.82 -1.65 -39.77 16 10 C 0.17 6.97 2.73 45.02 0.12 7.10 16 11 C -0.12 -4.49 5.55 30.67 0.17 -4.32 16 12 C 0.12 3.75 6.43 86.36 0.56 4.31 16 13 N -0.60 -17.85 2.97 -818.05 -2.43 -20.28 16 14 C 0.52 15.40 7.09 87.66 0.62 16.02 16 15 O -0.58 -20.62 14.90 -3.02 -0.05 -20.67 16 16 C -0.06 -1.20 2.36 -11.59 -0.03 -1.23 16 17 H 0.14 2.29 7.85 -2.39 -0.02 2.27 16 18 C -0.10 -1.67 6.34 31.51 0.20 -1.47 16 19 C -0.07 -0.84 6.80 30.58 0.21 -0.63 16 20 C -0.14 -2.68 6.16 -19.49 -0.12 -2.80 16 21 C -0.07 -1.08 10.17 22.47 0.23 -0.85 16 22 C -0.16 -3.00 10.12 22.35 0.23 -2.77 16 23 C 0.08 2.01 10.94 84.71 0.93 2.93 16 24 N -0.48 -13.47 5.04 -182.98 -0.92 -14.39 16 25 C 0.09 2.13 5.87 42.72 0.25 2.38 16 26 C 0.13 3.59 5.40 86.51 0.47 4.06 16 27 C -0.12 -4.31 5.05 30.82 0.16 -4.16 16 28 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 29 H 0.37 20.84 7.80 -92.71 -0.72 20.12 16 30 H 0.04 1.73 8.08 -2.39 -0.02 1.71 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.08 2.61 7.01 -2.39 -0.02 2.59 16 34 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.52 7.01 -2.38 -0.02 1.51 16 37 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 40 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 42 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.11 2.81 3.98 -2.39 -0.01 2.80 16 44 H 0.06 2.53 6.16 -2.39 -0.01 2.51 16 45 H 0.05 1.89 8.14 -2.38 -0.02 1.88 16 Total: -1.00 -73.02 351.73 2.83 -70.19 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.28 Total: 34.10 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 5.29 Total: 2.52 kcal Atomic # 7 Polarization: -129.93 SS G_CDS: -4.72 Total: -134.65 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.05 Total: -20.67 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -73.02 2.83 -70.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996922743.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.598 kcal (2) G-P(sol) polarization free energy of solvation -73.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds