Wall clock time and date at job start Tue Mar 31 2020 11:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99695 * 2 1 4 4 H 1.48500 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47116 * 299.99319 * 3 2 1 6 6 H 1.48493 * 109.47342 * 59.99751 * 3 2 1 7 7 C 1.38816 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99418 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00069 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99755 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.50133 * 324.93998 * 10 9 7 12 12 C 1.53039 * 109.49688 * 85.00209 * 10 9 7 13 13 C 1.53042 * 109.54061 * 181.31230 * 12 10 9 14 14 C 1.53190 * 109.31400 * 298.63619 * 13 12 10 15 15 N 1.46934 * 108.77492 * 54.63338 * 14 13 12 16 16 C 1.34777 * 120.63116 * 126.36473 * 15 14 13 17 17 O 1.21274 * 120.00135 * 180.27770 * 16 15 14 18 18 C 1.50706 * 119.99766 * 0.02562 * 16 15 14 19 19 H 1.08992 * 110.25957 * 302.04918 * 18 16 15 20 20 C 1.54335 * 110.29009 * 179.97438 * 18 16 15 21 21 C 1.54367 * 102.38960 * 214.73245 * 20 18 16 22 22 C 1.51220 * 105.11970 * 26.29286 * 21 20 18 23 23 C 1.38745 * 130.69207 * 162.86972 * 22 21 20 24 24 C 1.38572 * 118.55560 * 179.97438 * 23 22 21 25 25 C 1.38224 * 118.99121 * 0.02562 * 24 23 22 26 26 N 1.31688 * 120.80389 * 359.96954 * 25 24 23 27 27 C 1.32298 * 122.02918 * 0.04006 * 26 25 24 28 28 C 1.46921 * 118.73734 * 306.64447 * 15 14 13 29 29 H 0.96996 * 120.00183 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00208 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46040 * 61.29266 * 12 10 9 32 32 H 1.09001 * 109.46438 * 301.33583 * 12 10 9 33 33 H 1.08998 * 109.50243 * 178.68185 * 13 12 10 34 34 H 1.09007 * 109.49301 * 58.59046 * 13 12 10 35 35 H 1.08990 * 109.58855 * 294.84590 * 14 13 12 36 36 H 1.09002 * 109.58388 * 174.41796 * 14 13 12 37 37 H 1.09001 * 110.82717 * 332.96080 * 20 18 16 38 38 H 1.09004 * 110.82014 * 96.50723 * 20 18 16 39 39 H 1.09004 * 110.31604 * 145.20797 * 21 20 18 40 40 H 1.09005 * 110.31276 * 267.28521 * 21 20 18 41 41 H 1.07998 * 120.71975 * 359.96782 * 23 22 21 42 42 H 1.08004 * 120.50579 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.59887 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.58730 * 173.14190 * 28 15 14 45 45 H 1.09004 * 109.58544 * 293.56710 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9684 -3.5513 -0.5897 12 6 2.4224 -4.0362 1.4377 13 6 3.2161 -5.3447 1.4361 14 6 2.3500 -6.4619 0.8458 15 7 1.8758 -6.0422 -0.4801 16 6 2.0766 -6.8229 -1.5601 17 8 1.6848 -6.4629 -2.6499 18 6 2.7932 -8.1407 -1.4145 19 1 3.7854 -7.9860 -0.9909 20 6 2.8989 -8.8465 -2.7829 21 6 2.7678 -10.3358 -2.3984 22 6 1.9763 -10.3423 -1.1099 23 6 1.2931 -11.3683 -0.4731 24 6 0.6426 -11.0912 0.7187 25 6 0.6967 -9.8077 1.2287 26 7 1.3551 -8.8581 0.5970 27 6 1.9885 -9.0825 -0.5427 28 6 1.1839 -4.7523 -0.6070 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 1.5109 -4.1651 2.0214 32 1 3.0277 -3.2449 1.8800 33 1 3.4953 -5.6022 2.4578 34 1 4.1155 -5.2239 0.8322 35 1 1.4963 -6.6457 1.4979 36 1 2.9425 -7.3720 0.7507 37 1 2.0837 -8.5427 -3.4397 38 1 3.8655 -8.6497 -3.2467 39 1 2.2313 -10.8813 -3.1748 40 1 3.7533 -10.7742 -2.2411 41 1 1.2687 -12.3613 -0.8971 42 1 0.1009 -11.8662 1.2407 43 1 0.1929 -9.5807 2.1567 44 1 1.0071 -4.5346 -1.6603 45 1 0.2330 -4.7938 -0.0757 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000024021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:07 Heat of formation + Delta-G solvation = 20.261780 kcal Electronic energy + Delta-G solvation = -26690.910271 eV Core-core repulsion = 23094.473397 eV Total energy + Delta-G solvation = -3596.436874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36518 -39.53890 -37.46734 -36.04961 -34.46204 -33.03470 -32.01163 -31.13042 -29.63269 -29.04736 -27.78238 -25.00731 -23.82492 -23.73600 -22.35964 -21.89142 -21.53706 -19.82259 -18.65087 -17.23827 -17.16572 -16.93942 -16.68473 -15.78299 -15.29318 -14.88971 -14.65224 -14.36981 -13.97545 -13.81225 -13.74486 -13.50365 -13.47074 -13.08554 -12.98045 -12.72156 -12.50452 -12.21293 -12.11305 -11.91421 -11.71808 -11.28717 -10.97116 -10.87902 -10.77782 -10.53916 -10.32088 -10.25766 -10.05949 -9.95727 -9.73912 -9.59942 -9.42394 -8.95452 -8.86556 -8.20293 -6.93550 -5.73602 -3.02717 0.78670 0.99604 2.75770 3.21529 3.45864 3.51281 3.53410 3.54119 3.69535 4.07966 4.41221 4.55252 4.62280 4.63422 4.68831 4.88215 4.96452 5.05921 5.20572 5.24530 5.29267 5.38993 5.45679 5.49083 5.53427 5.65841 5.70742 5.74277 5.83443 5.88044 5.91548 5.93522 6.01450 6.02234 6.25873 6.28826 6.38727 6.40779 6.50649 6.65221 6.85362 6.97734 7.13650 7.71700 7.73372 7.73961 8.39658 8.45115 9.55630 10.11896 10.47158 11.49113 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025503 B = 0.003086 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.660292 B = 9071.964324 C = 9515.579116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.722 5.722 10 C 0.169 3.831 11 H 0.048 0.952 12 C -0.135 4.135 13 C -0.139 4.139 14 C 0.127 3.873 15 N -0.591 5.591 16 C 0.523 3.477 17 O -0.544 6.544 18 C -0.060 4.060 19 H 0.118 0.882 20 C -0.104 4.104 21 C -0.079 4.079 22 C -0.142 4.142 23 C -0.066 4.066 24 C -0.171 4.171 25 C 0.103 3.897 26 N -0.466 5.466 27 C 0.125 3.875 28 C 0.107 3.893 29 H 0.254 0.746 30 H 0.384 0.616 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.159 0.841 44 H 0.090 0.910 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.512 -27.191 1.307 27.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.363 5.363 10 C 0.058 3.942 11 H 0.067 0.933 12 C -0.176 4.176 13 C -0.178 4.178 14 C 0.004 3.996 15 N -0.322 5.322 16 C 0.309 3.691 17 O -0.422 6.422 18 C -0.082 4.082 19 H 0.136 0.864 20 C -0.143 4.143 21 C -0.117 4.117 22 C -0.144 4.144 23 C -0.092 4.092 24 C -0.191 4.191 25 C -0.055 4.055 26 N -0.174 5.174 27 C -0.012 4.012 28 C -0.016 4.016 29 H 0.064 0.936 30 H 0.218 0.782 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.176 0.824 44 H 0.109 0.891 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.427 -25.989 1.090 26.572 hybrid contribution 0.043 0.060 0.046 0.087 sum 5.470 -25.929 1.137 26.524 Atomic orbital electron populations 1.69672 1.05093 1.25533 1.57748 1.24745 0.95520 0.97668 1.03027 0.86118 0.78780 0.84160 0.77150 1.20569 1.21868 1.21911 1.19258 0.90993 0.83905 1.42534 0.91127 1.42322 1.05807 0.99549 1.88572 1.20386 0.94597 0.85969 0.93240 0.93349 1.22252 0.99575 0.95280 1.00475 1.22052 0.98901 0.96501 1.00372 1.21809 0.98429 0.96047 0.83287 1.47964 1.56635 1.19662 1.07943 1.20042 0.79822 0.85138 0.84090 1.90682 1.51984 1.73543 1.25984 1.20904 0.98993 0.92232 0.96053 0.86423 1.22314 1.04699 0.92439 0.94800 1.21022 0.99410 0.97754 0.93499 1.21434 0.99447 0.94901 0.98610 1.21060 0.94851 0.98834 0.94411 1.22101 1.01234 0.98795 0.96977 1.22731 0.95184 0.88580 0.98957 1.67168 1.07137 1.35411 1.07692 1.21392 0.95221 0.93138 0.91488 1.21881 0.95157 0.81447 1.03071 0.93560 0.78221 0.92527 0.91812 0.91613 0.92321 0.90572 0.90379 0.88609 0.89354 0.90001 0.89633 0.84984 0.84560 0.82363 0.89142 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 7 C -0.24 -6.66 9.93 -15.06 -0.15 -6.81 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.72 -18.57 5.12 -53.53 -0.27 -18.84 16 10 C 0.17 3.52 2.91 -68.03 -0.20 3.33 16 11 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 12 C -0.14 -2.45 5.47 -26.69 -0.15 -2.59 16 13 C -0.14 -1.96 6.08 -26.61 -0.16 -2.12 16 14 C 0.13 1.73 4.48 -3.71 -0.02 1.71 16 15 N -0.59 -9.59 2.98 -173.03 -0.52 -10.11 16 16 C 0.52 8.45 7.09 -10.98 -0.08 8.37 16 17 O -0.54 -10.66 14.90 5.56 0.08 -10.58 16 18 C -0.06 -0.70 2.35 -91.84 -0.22 -0.92 16 19 H 0.12 1.17 7.61 -51.93 -0.40 0.77 16 20 C -0.10 -1.02 6.34 -25.32 -0.16 -1.18 16 21 C -0.08 -0.59 6.77 -26.91 -0.18 -0.78 16 22 C -0.14 -1.34 6.16 -104.21 -0.64 -1.98 16 23 C -0.07 -0.51 10.17 -39.27 -0.40 -0.91 16 24 C -0.17 -1.28 10.12 -39.46 -0.40 -1.68 16 25 C 0.10 0.94 11.18 -17.62 -0.20 0.75 16 26 N -0.47 -5.46 6.94 -9.19 -0.06 -5.53 16 27 C 0.13 1.44 5.90 -82.03 -0.48 0.96 16 28 C 0.11 2.05 5.88 -3.93 -0.02 2.03 16 29 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.38 10.47 7.80 -40.82 -0.32 10.15 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.06 7.58 -51.93 -0.39 0.67 16 36 H 0.08 0.95 4.70 -51.93 -0.24 0.70 16 37 H 0.10 1.14 7.02 -51.93 -0.36 0.78 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 42 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 43 H 0.16 1.07 8.06 -52.48 -0.42 0.65 16 44 H 0.09 1.93 7.00 -51.93 -0.36 1.57 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -33.89 355.45 -9.96 -43.85 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.70 Total: 8.29 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -3.55 Total: -2.31 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -0.13 Total: -62.33 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.89 -9.96 -43.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000024021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.108 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds