Wall clock time and date at job start Tue Mar 31 2020 11:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99695 * 2 1 4 4 H 1.48500 * 109.46981 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47116 * 299.99319 * 3 2 1 6 6 H 1.48493 * 109.47342 * 59.99751 * 3 2 1 7 7 C 1.38816 * 120.00012 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99418 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00069 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99755 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.50133 * 324.93998 * 10 9 7 12 12 C 1.53039 * 109.49688 * 85.00209 * 10 9 7 13 13 C 1.53042 * 109.54061 * 181.31230 * 12 10 9 14 14 C 1.53190 * 109.31400 * 298.63619 * 13 12 10 15 15 N 1.46934 * 108.77492 * 54.63338 * 14 13 12 16 16 C 1.34777 * 120.63116 * 126.36473 * 15 14 13 17 17 O 1.21274 * 120.00135 * 180.27770 * 16 15 14 18 18 C 1.50706 * 119.99766 * 0.02562 * 16 15 14 19 19 H 1.08992 * 110.25957 * 302.04918 * 18 16 15 20 20 C 1.54335 * 110.29009 * 179.97438 * 18 16 15 21 21 C 1.54367 * 102.38960 * 214.73245 * 20 18 16 22 22 C 1.51220 * 105.11970 * 26.29286 * 21 20 18 23 23 C 1.38745 * 130.69207 * 162.86972 * 22 21 20 24 24 C 1.38572 * 118.55560 * 179.97438 * 23 22 21 25 25 C 1.38224 * 118.99121 * 0.02562 * 24 23 22 26 26 N 1.31688 * 120.80389 * 359.96954 * 25 24 23 27 27 C 1.32298 * 122.02918 * 0.04006 * 26 25 24 28 28 C 1.46921 * 118.73734 * 306.64447 * 15 14 13 29 29 H 0.96996 * 120.00183 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00208 * 0.02562 * 9 7 2 31 31 H 1.09005 * 109.46040 * 61.29266 * 12 10 9 32 32 H 1.09001 * 109.46438 * 301.33583 * 12 10 9 33 33 H 1.08998 * 109.50243 * 178.68185 * 13 12 10 34 34 H 1.09007 * 109.49301 * 58.59046 * 13 12 10 35 35 H 1.08990 * 109.58855 * 294.84590 * 14 13 12 36 36 H 1.09002 * 109.58388 * 174.41796 * 14 13 12 37 37 H 1.09001 * 110.82717 * 332.96080 * 20 18 16 38 38 H 1.09004 * 110.82014 * 96.50723 * 20 18 16 39 39 H 1.09004 * 110.31604 * 145.20797 * 21 20 18 40 40 H 1.09005 * 110.31276 * 267.28521 * 21 20 18 41 41 H 1.07998 * 120.71975 * 359.96782 * 23 22 21 42 42 H 1.08004 * 120.50579 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.59887 * 179.97438 * 25 24 23 44 44 H 1.09000 * 109.58730 * 173.14190 * 28 15 14 45 45 H 1.09004 * 109.58544 * 293.56710 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9684 -3.5513 -0.5897 12 6 2.4224 -4.0362 1.4377 13 6 3.2161 -5.3447 1.4361 14 6 2.3500 -6.4619 0.8458 15 7 1.8758 -6.0422 -0.4801 16 6 2.0766 -6.8229 -1.5601 17 8 1.6848 -6.4629 -2.6499 18 6 2.7932 -8.1407 -1.4145 19 1 3.7854 -7.9860 -0.9909 20 6 2.8989 -8.8465 -2.7829 21 6 2.7678 -10.3358 -2.3984 22 6 1.9763 -10.3423 -1.1099 23 6 1.2931 -11.3683 -0.4731 24 6 0.6426 -11.0912 0.7187 25 6 0.6967 -9.8077 1.2287 26 7 1.3551 -8.8581 0.5970 27 6 1.9885 -9.0825 -0.5427 28 6 1.1839 -4.7523 -0.6070 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 1.5109 -4.1651 2.0214 32 1 3.0277 -3.2449 1.8800 33 1 3.4953 -5.6022 2.4578 34 1 4.1155 -5.2239 0.8322 35 1 1.4963 -6.6457 1.4979 36 1 2.9425 -7.3720 0.7507 37 1 2.0837 -8.5427 -3.4397 38 1 3.8655 -8.6497 -3.2467 39 1 2.2313 -10.8813 -3.1748 40 1 3.7533 -10.7742 -2.2411 41 1 1.2687 -12.3613 -0.8971 42 1 0.1009 -11.8662 1.2407 43 1 0.1929 -9.5807 2.1567 44 1 1.0071 -4.5346 -1.6603 45 1 0.2330 -4.7938 -0.0757 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000024021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:06 Heat of formation + Delta-G solvation = -1.023802 kcal Electronic energy + Delta-G solvation = -26691.833283 eV Core-core repulsion = 23094.473397 eV Total energy + Delta-G solvation = -3597.359886 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.21532 -40.68939 -38.85307 -36.90618 -36.23305 -34.10824 -33.39948 -32.76030 -30.56267 -30.19718 -29.04798 -26.36274 -25.74819 -24.42302 -23.39197 -23.19623 -22.36290 -21.26438 -19.91960 -19.14939 -18.41332 -17.77921 -17.45521 -16.96614 -16.61871 -16.15916 -15.87490 -15.61776 -15.39012 -15.14002 -14.99767 -14.73457 -14.60733 -14.37509 -14.03313 -13.79938 -13.73281 -13.57588 -13.01137 -12.92800 -12.89689 -12.57554 -12.51203 -12.29423 -12.16894 -12.06455 -11.98143 -11.85140 -11.71302 -11.61241 -10.96713 -10.93549 -10.60562 -10.19658 -9.65769 -9.59129 -9.04911 -7.96695 -5.26764 0.12941 0.38112 1.45300 1.46927 1.53325 1.56888 1.96187 2.55247 2.83652 2.95070 3.33908 3.36314 3.52131 3.80708 3.86511 3.93547 4.00445 4.07612 4.13563 4.15405 4.21911 4.31402 4.33844 4.36415 4.48969 4.59661 4.60795 4.67304 4.81209 4.84266 4.86300 4.95927 5.00514 5.08152 5.13081 5.15094 5.24494 5.27393 5.33188 5.39746 5.43934 5.52492 5.59038 5.81113 6.24610 6.45077 7.03116 7.12114 7.30245 8.02206 8.27617 9.27023 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025503 B = 0.003086 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.660292 B = 9071.964324 C = 9515.579116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.290 1.290 7 C -0.238 4.238 8 H 0.074 0.926 9 N -0.735 5.735 10 C 0.170 3.830 11 H 0.034 0.966 12 C -0.125 4.125 13 C -0.129 4.129 14 C 0.134 3.866 15 N -0.592 5.592 16 C 0.514 3.486 17 O -0.588 6.588 18 C -0.053 4.053 19 H 0.138 0.862 20 C -0.105 4.105 21 C -0.070 4.070 22 C -0.146 4.146 23 C -0.069 4.069 24 C -0.161 4.161 25 C 0.085 3.915 26 N -0.494 5.494 27 C 0.093 3.907 28 C 0.121 3.879 29 H 0.252 0.748 30 H 0.372 0.628 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.162 0.838 42 H 0.168 0.832 43 H 0.176 0.824 44 H 0.060 0.940 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.206 -30.164 2.347 31.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.190 1.190 5 H -0.221 1.221 6 H -0.217 1.217 7 C -0.370 4.370 8 H 0.092 0.908 9 N -0.375 5.375 10 C 0.061 3.939 11 H 0.052 0.948 12 C -0.165 4.165 13 C -0.168 4.168 14 C 0.013 3.987 15 N -0.323 5.323 16 C 0.303 3.697 17 O -0.469 6.469 18 C -0.075 4.075 19 H 0.155 0.845 20 C -0.143 4.143 21 C -0.107 4.107 22 C -0.148 4.148 23 C -0.094 4.094 24 C -0.181 4.181 25 C -0.072 4.072 26 N -0.203 5.203 27 C -0.044 4.044 28 C -0.004 4.004 29 H 0.060 0.940 30 H 0.204 0.796 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.129 0.871 41 H 0.180 0.820 42 H 0.185 0.815 43 H 0.193 0.807 44 H 0.079 0.921 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.173 -29.018 2.153 29.968 hybrid contribution -0.537 0.876 -0.277 1.064 sum 6.636 -28.141 1.877 28.974 Atomic orbital electron populations 1.69831 1.06652 1.26054 1.59473 1.25589 0.96420 1.01127 1.03632 0.85050 0.78211 0.79665 0.76700 1.19012 1.22139 1.21744 1.19597 0.91316 0.84962 1.41139 0.90768 1.42502 1.05426 1.00770 1.88850 1.20511 0.93630 0.84716 0.95083 0.94836 1.22044 0.99783 0.97159 0.97525 1.22012 0.98239 0.94053 1.02471 1.21922 0.98583 0.96578 0.81654 1.48055 1.56393 1.18389 1.09414 1.20981 0.79189 0.86379 0.83119 1.90655 1.53781 1.74808 1.27650 1.20961 0.99262 0.89510 0.97744 0.84504 1.22329 1.04507 0.94094 0.93368 1.21030 1.00731 0.95950 0.92985 1.21694 0.99532 0.94540 0.99040 1.21464 0.93895 0.99756 0.94317 1.22469 1.00179 0.98743 0.96696 1.23144 0.95268 0.89154 0.99637 1.67059 1.08089 1.36862 1.08309 1.21377 0.96813 0.93917 0.92261 1.21447 0.95112 0.82933 1.00874 0.93963 0.79576 0.92907 0.93335 0.88459 0.91906 0.90549 0.88027 0.91506 0.87619 0.88689 0.87080 0.82037 0.81494 0.80740 0.92112 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.13 13.06 21.65 0.28 -60.85 16 2 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 3 Si 0.97 47.47 29.55 68.60 2.03 49.50 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 7 C -0.24 -13.77 9.93 84.03 0.83 -12.94 16 8 H 0.07 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.74 -39.34 5.12 -323.26 -1.66 -41.00 16 10 C 0.17 7.33 2.91 44.93 0.13 7.46 16 11 H 0.03 1.54 8.08 -2.39 -0.02 1.52 16 12 C -0.12 -4.51 5.47 30.62 0.17 -4.35 16 13 C -0.13 -3.40 6.08 30.67 0.19 -3.22 16 14 C 0.13 3.48 4.48 86.36 0.39 3.87 16 15 N -0.59 -19.49 2.98 -819.73 -2.44 -21.93 16 16 C 0.51 16.97 7.09 87.66 0.62 17.59 16 17 O -0.59 -24.25 14.90 -3.01 -0.04 -24.29 16 18 C -0.05 -1.19 2.35 -11.58 -0.03 -1.22 16 19 H 0.14 2.43 7.61 -2.39 -0.02 2.41 16 20 C -0.10 -1.93 6.34 31.51 0.20 -1.73 16 21 C -0.07 -0.85 6.77 30.48 0.21 -0.64 16 22 C -0.15 -2.36 6.16 -19.59 -0.12 -2.48 16 23 C -0.07 -0.82 10.17 22.47 0.23 -0.60 16 24 C -0.16 -1.86 10.12 22.35 0.23 -1.63 16 25 C 0.09 1.37 11.18 84.71 0.95 2.32 16 26 N -0.49 -10.81 6.94 -182.98 -1.27 -12.08 16 27 C 0.09 1.99 5.90 42.72 0.25 2.24 16 28 C 0.12 4.85 5.88 86.22 0.51 5.36 16 29 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.37 21.34 7.80 -92.71 -0.72 20.62 16 31 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.08 2.02 7.58 -2.39 -0.02 2.01 16 36 H 0.10 2.24 4.70 -2.39 -0.01 2.23 16 37 H 0.07 1.63 7.02 -2.39 -0.02 1.61 16 38 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 42 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 43 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 44 H 0.06 2.79 7.00 -2.39 -0.02 2.77 16 45 H 0.06 2.41 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -76.86 355.45 2.39 -74.47 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: 0.28 Total: 30.15 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 5.21 Total: 6.03 kcal Atomic # 7 Polarization: -130.78 SS G_CDS: -5.08 Total: -135.86 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.04 Total: -24.29 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 2.03 Total: 49.50 kcal Total: -76.86 2.39 -74.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000024021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.448 kcal (2) G-P(sol) polarization free energy of solvation -76.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds