Wall clock time and date at job start Tue Mar 31 2020 11:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00049 * 2 1 4 4 H 1.48497 * 109.47265 * 270.00310 * 3 2 1 5 5 H 1.48503 * 109.47111 * 29.99804 * 3 2 1 6 6 H 1.48501 * 109.47474 * 149.99883 * 3 2 1 7 7 C 1.38810 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99804 * 163.07523 * 7 2 1 9 9 N 1.36933 * 120.00392 * 343.07217 * 7 2 1 10 10 C 1.46927 * 120.63579 * 151.82278 * 9 7 2 11 11 C 1.53193 * 108.77447 * 126.41436 * 10 9 7 12 12 C 1.53042 * 109.30992 * 54.64053 * 11 10 9 13 13 C 1.53037 * 109.53984 * 298.63119 * 12 11 10 14 14 H 1.09004 * 109.50003 * 301.41873 * 13 12 11 15 15 N 1.46498 * 109.52484 * 181.33607 * 13 12 11 16 16 C 1.34777 * 120.00066 * 155.08434 * 15 13 12 17 17 O 1.21284 * 119.99878 * 359.97438 * 16 15 13 18 18 C 1.50699 * 120.00089 * 179.97438 * 16 15 13 19 19 H 1.08995 * 110.25871 * 59.29538 * 18 16 15 20 20 C 1.54340 * 110.29397 * 181.34686 * 18 16 15 21 21 C 1.54368 * 102.38839 * 92.60276 * 20 18 16 22 22 C 1.51228 * 105.11983 * 26.28909 * 21 20 18 23 23 C 1.38738 * 130.69019 * 162.86997 * 22 21 20 24 24 C 1.38582 * 118.55579 * 179.97438 * 23 22 21 25 25 C 1.38228 * 118.98729 * 0.02562 * 24 23 22 26 26 N 1.31686 * 120.80464 * 359.97438 * 25 24 23 27 27 C 1.32104 * 122.10077 * 0.06173 * 26 25 24 28 28 C 1.46933 * 120.62775 * 331.85182 * 9 7 2 29 29 H 0.96999 * 120.00109 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.58786 * 246.20526 * 10 9 7 31 31 H 1.09001 * 109.57835 * 6.48976 * 10 9 7 32 32 H 1.09004 * 109.49607 * 174.59161 * 11 10 9 33 33 H 1.08998 * 109.49656 * 294.65458 * 11 10 9 34 34 H 1.08999 * 109.45387 * 178.61127 * 12 11 10 35 35 H 1.08993 * 109.45766 * 58.65504 * 12 11 10 36 36 H 0.96996 * 119.99619 * 335.07529 * 15 13 12 37 37 H 1.08995 * 110.82326 * 210.82614 * 20 18 16 38 38 H 1.08999 * 110.82104 * 334.18585 * 20 18 16 39 39 H 1.08999 * 110.31495 * 145.20198 * 21 20 18 40 40 H 1.09005 * 110.31395 * 267.27920 * 21 20 18 41 41 H 1.08001 * 120.72487 * 0.02562 * 23 22 21 42 42 H 1.07996 * 120.50462 * 179.97438 * 24 23 22 43 43 H 1.07995 * 119.59510 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.58537 * 113.79712 * 28 9 7 45 45 H 1.08999 * 109.70255 * 353.43632 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2224 -0.2717 9 7 1.3701 -2.3622 0.3463 10 6 1.8138 -3.6529 -0.1976 11 6 2.0674 -4.6172 0.9654 12 6 0.8120 -4.7005 1.8366 13 6 0.4974 -3.3188 2.4146 14 1 1.3471 -2.9671 2.9998 15 7 -0.6859 -3.4055 3.2740 16 6 -0.8699 -2.5053 4.2601 17 8 -0.0557 -1.6239 4.4363 18 6 -2.0874 -2.5941 5.1438 19 1 -2.1122 -3.5555 5.6567 20 6 -2.0901 -1.4402 6.1688 21 6 -2.9164 -0.3559 5.4447 22 6 -3.8201 -1.1146 4.4989 23 6 -4.9723 -0.7181 3.8354 24 6 -5.6123 -1.6331 3.0147 25 6 -5.0826 -2.9034 2.8869 26 7 -3.9866 -3.2452 3.5320 27 6 -3.3470 -2.4035 4.3242 28 6 0.2260 -2.3398 1.2680 29 1 -0.4850 0.8400 0.0004 30 1 1.0402 -4.0606 -0.8483 31 1 2.7332 -3.5130 -0.7662 32 1 2.3043 -5.6061 0.5730 33 1 2.9027 -4.2536 1.5639 34 1 0.9814 -5.4049 2.6510 35 1 -0.0281 -5.0408 1.2313 36 1 -1.3369 -4.1105 3.1332 37 1 -2.5780 -1.7454 7.0945 38 1 -1.0755 -1.0928 6.3637 39 1 -3.5099 0.2101 6.1627 40 1 -2.2590 0.3121 4.8881 41 1 -5.3615 0.2822 3.9554 42 1 -6.5116 -1.3581 2.4837 43 1 -5.5736 -3.6244 2.2502 44 1 -0.6770 -2.6405 0.7368 45 1 0.0967 -1.3345 1.6688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008338569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:35 Heat of formation + Delta-G solvation = 16.052939 kcal Electronic energy + Delta-G solvation = -27196.591345 eV Core-core repulsion = 23599.971962 eV Total energy + Delta-G solvation = -3596.619383 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.99525 -39.17032 -37.39620 -35.75214 -34.04504 -32.81732 -32.48452 -30.03087 -29.46394 -29.14492 -27.64300 -25.22198 -23.54836 -22.92983 -22.11059 -21.76382 -20.94134 -19.70308 -19.13424 -17.28191 -16.81997 -16.61758 -16.09092 -15.54429 -15.17185 -14.85263 -14.46494 -14.10010 -13.92414 -13.51369 -13.48235 -13.45933 -13.10471 -12.98565 -12.68284 -12.35107 -12.27878 -11.96596 -11.85014 -11.75184 -11.23905 -11.09809 -10.98512 -10.70276 -10.67007 -10.43639 -10.22024 -10.00768 -9.89845 -9.78088 -9.50173 -9.44611 -9.30028 -8.60389 -8.44475 -8.39059 -6.60590 -5.71621 -3.15167 1.07016 1.29177 2.97297 3.42912 3.50141 3.53305 3.55459 3.84487 3.99061 4.37799 4.56715 4.74117 4.84679 4.93318 4.96815 5.15936 5.25616 5.34783 5.41585 5.45701 5.54905 5.59714 5.62139 5.68349 5.75290 5.76918 5.85095 6.03652 6.08667 6.13467 6.19151 6.21371 6.26940 6.38810 6.47024 6.56214 6.68046 6.75960 6.82350 7.00467 7.04217 7.35892 7.77943 7.86758 7.97365 8.02815 8.51868 8.70627 9.26847 9.91141 10.46592 11.36023 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.011838 B = 0.004952 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.705831 B = 5653.246219 C = 6463.519913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.006 3.994 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.589 5.589 10 C 0.142 3.858 11 C -0.130 4.130 12 C -0.116 4.116 13 C 0.117 3.883 14 H 0.081 0.919 15 N -0.713 5.713 16 C 0.523 3.477 17 O -0.529 6.529 18 C -0.060 4.060 19 H 0.111 0.889 20 C -0.104 4.104 21 C -0.081 4.081 22 C -0.135 4.135 23 C -0.066 4.066 24 C -0.168 4.168 25 C 0.102 3.898 26 N -0.474 5.474 27 C 0.125 3.875 28 C 0.171 3.829 29 H 0.252 0.748 30 H 0.017 0.983 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.397 0.603 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.157 0.843 44 H 0.014 0.986 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.496 -7.115 10.709 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.170 4.170 12 C -0.154 4.154 13 C 0.011 3.989 14 H 0.099 0.901 15 N -0.363 5.363 16 C 0.307 3.693 17 O -0.405 6.405 18 C -0.082 4.082 19 H 0.128 0.872 20 C -0.142 4.142 21 C -0.118 4.118 22 C -0.137 4.137 23 C -0.092 4.092 24 C -0.188 4.188 25 C -0.055 4.055 26 N -0.182 5.182 27 C -0.013 4.013 28 C 0.044 3.956 29 H 0.062 0.938 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.231 0.769 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.175 0.825 44 H 0.032 0.968 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.667 -7.170 10.690 16.098 hybrid contribution -0.518 1.314 -0.221 1.430 sum -10.186 -5.855 10.469 15.736 Atomic orbital electron populations 1.70028 1.05327 1.25382 1.53471 1.25037 0.95244 0.98449 1.00563 0.86320 0.79346 0.83760 0.77499 1.21452 1.21577 1.20366 1.19129 0.92528 0.84798 1.42031 0.91669 1.43967 1.36052 1.01739 1.49379 1.20955 0.97686 0.86916 0.92861 1.21995 0.96981 0.99277 0.98758 1.21666 0.98867 0.96090 0.98758 1.21964 0.87056 0.96892 0.92960 0.90067 1.46042 1.26057 1.31498 1.32656 1.19946 0.86427 0.81917 0.81053 1.90721 1.45293 1.33909 1.70576 1.20788 0.89647 1.02639 0.95150 0.87154 1.22253 1.02745 0.93114 0.96069 1.21007 0.96339 0.97908 0.96548 1.21556 0.96048 0.96709 0.99348 1.21057 0.93704 0.99792 0.94624 1.22064 1.01713 0.95100 0.99935 1.22561 0.91535 0.95136 0.96311 1.66636 1.07879 1.37213 1.06462 1.21311 0.94815 0.90501 0.94705 1.21032 0.88579 0.98696 0.87323 0.93796 0.96491 0.92648 0.92652 0.92134 0.93084 0.92281 0.76882 0.90301 0.87961 0.90306 0.88958 0.85015 0.84594 0.82533 0.96761 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 11.19 55.49 0.62 -26.76 16 2 C 0.01 0.18 4.92 -17.43 -0.09 0.09 16 3 Si 0.90 22.86 29.59 -169.99 -5.03 17.83 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.26 -7.34 9.58 -15.06 -0.14 -7.48 16 8 H 0.07 1.82 7.89 -52.49 -0.41 1.41 16 9 N -0.59 -15.44 2.99 -172.32 -0.52 -15.95 16 10 C 0.14 3.06 6.52 -3.71 -0.02 3.03 16 11 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 12 C -0.12 -1.98 5.36 -26.69 -0.14 -2.13 16 13 C 0.12 2.40 2.60 -67.81 -0.18 2.22 16 14 H 0.08 1.86 7.58 -51.93 -0.39 1.47 16 15 N -0.71 -12.75 5.02 -53.69 -0.27 -13.02 16 16 C 0.52 9.53 7.13 -10.99 -0.08 9.45 16 17 O -0.53 -11.68 15.12 5.55 0.08 -11.60 16 18 C -0.06 -0.84 3.26 -91.84 -0.30 -1.14 16 19 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 20 C -0.10 -1.26 6.38 -25.31 -0.16 -1.42 16 21 C -0.08 -1.02 6.76 -26.91 -0.18 -1.20 16 22 C -0.13 -1.88 6.16 -104.12 -0.64 -2.52 16 23 C -0.07 -0.81 10.17 -39.27 -0.40 -1.21 16 24 C -0.17 -1.91 10.12 -39.46 -0.40 -2.31 16 25 C 0.10 1.27 11.18 -17.62 -0.20 1.07 16 26 N -0.47 -6.93 10.34 -9.17 -0.09 -7.03 16 27 C 0.12 1.85 6.58 -82.03 -0.54 1.31 16 28 C 0.17 4.35 4.88 -3.71 -0.02 4.33 16 29 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 1.16 7.93 -51.93 -0.41 0.74 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.40 6.27 8.60 -40.82 -0.35 5.92 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.37 6.96 -51.93 -0.36 1.01 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 42 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 43 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 2.76 6.07 -51.93 -0.31 2.45 16 LS Contribution 362.17 15.07 5.46 5.46 Total: -1.00 -34.40 362.17 -10.28 -44.67 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.88 Total: 6.76 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -3.65 Total: -0.36 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -0.26 Total: -62.76 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.03 Total: 17.83 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.40 -10.28 -44.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008338569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.724 kcal (2) G-P(sol) polarization free energy of solvation -34.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds