Wall clock time and date at job start Tue Mar 31 2020 11:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00049 * 2 1 4 4 H 1.48497 * 109.47265 * 270.00310 * 3 2 1 5 5 H 1.48503 * 109.47111 * 29.99804 * 3 2 1 6 6 H 1.48501 * 109.47474 * 149.99883 * 3 2 1 7 7 C 1.38810 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99804 * 163.07523 * 7 2 1 9 9 N 1.36933 * 120.00392 * 343.07217 * 7 2 1 10 10 C 1.46927 * 120.63579 * 151.82278 * 9 7 2 11 11 C 1.53193 * 108.77447 * 126.41436 * 10 9 7 12 12 C 1.53042 * 109.30992 * 54.64053 * 11 10 9 13 13 C 1.53037 * 109.53984 * 298.63119 * 12 11 10 14 14 H 1.09004 * 109.50003 * 301.41873 * 13 12 11 15 15 N 1.46498 * 109.52484 * 181.33607 * 13 12 11 16 16 C 1.34777 * 120.00066 * 155.08434 * 15 13 12 17 17 O 1.21284 * 119.99878 * 359.97438 * 16 15 13 18 18 C 1.50699 * 120.00089 * 179.97438 * 16 15 13 19 19 H 1.08995 * 110.25871 * 59.29538 * 18 16 15 20 20 C 1.54340 * 110.29397 * 181.34686 * 18 16 15 21 21 C 1.54368 * 102.38839 * 92.60276 * 20 18 16 22 22 C 1.51228 * 105.11983 * 26.28909 * 21 20 18 23 23 C 1.38738 * 130.69019 * 162.86997 * 22 21 20 24 24 C 1.38582 * 118.55579 * 179.97438 * 23 22 21 25 25 C 1.38228 * 118.98729 * 0.02562 * 24 23 22 26 26 N 1.31686 * 120.80464 * 359.97438 * 25 24 23 27 27 C 1.32104 * 122.10077 * 0.06173 * 26 25 24 28 28 C 1.46933 * 120.62775 * 331.85182 * 9 7 2 29 29 H 0.96999 * 120.00109 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.58786 * 246.20526 * 10 9 7 31 31 H 1.09001 * 109.57835 * 6.48976 * 10 9 7 32 32 H 1.09004 * 109.49607 * 174.59161 * 11 10 9 33 33 H 1.08998 * 109.49656 * 294.65458 * 11 10 9 34 34 H 1.08999 * 109.45387 * 178.61127 * 12 11 10 35 35 H 1.08993 * 109.45766 * 58.65504 * 12 11 10 36 36 H 0.96996 * 119.99619 * 335.07529 * 15 13 12 37 37 H 1.08995 * 110.82326 * 210.82614 * 20 18 16 38 38 H 1.08999 * 110.82104 * 334.18585 * 20 18 16 39 39 H 1.08999 * 110.31495 * 145.20198 * 21 20 18 40 40 H 1.09005 * 110.31395 * 267.27920 * 21 20 18 41 41 H 1.08001 * 120.72487 * 0.02562 * 23 22 21 42 42 H 1.07996 * 120.50462 * 179.97438 * 24 23 22 43 43 H 1.07995 * 119.59510 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.58537 * 113.79712 * 28 9 7 45 45 H 1.08999 * 109.70255 * 353.43632 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2224 -0.2717 9 7 1.3701 -2.3622 0.3463 10 6 1.8138 -3.6529 -0.1976 11 6 2.0674 -4.6172 0.9654 12 6 0.8120 -4.7005 1.8366 13 6 0.4974 -3.3188 2.4146 14 1 1.3471 -2.9671 2.9998 15 7 -0.6859 -3.4055 3.2740 16 6 -0.8699 -2.5053 4.2601 17 8 -0.0557 -1.6239 4.4363 18 6 -2.0874 -2.5941 5.1438 19 1 -2.1122 -3.5555 5.6567 20 6 -2.0901 -1.4402 6.1688 21 6 -2.9164 -0.3559 5.4447 22 6 -3.8201 -1.1146 4.4989 23 6 -4.9723 -0.7181 3.8354 24 6 -5.6123 -1.6331 3.0147 25 6 -5.0826 -2.9034 2.8869 26 7 -3.9866 -3.2452 3.5320 27 6 -3.3470 -2.4035 4.3242 28 6 0.2260 -2.3398 1.2680 29 1 -0.4850 0.8400 0.0004 30 1 1.0402 -4.0606 -0.8483 31 1 2.7332 -3.5130 -0.7662 32 1 2.3043 -5.6061 0.5730 33 1 2.9027 -4.2536 1.5639 34 1 0.9814 -5.4049 2.6510 35 1 -0.0281 -5.0408 1.2313 36 1 -1.3369 -4.1105 3.1332 37 1 -2.5780 -1.7454 7.0945 38 1 -1.0755 -1.0928 6.3637 39 1 -3.5099 0.2101 6.1627 40 1 -2.2590 0.3121 4.8881 41 1 -5.3615 0.2822 3.9554 42 1 -6.5116 -1.3581 2.4837 43 1 -5.5736 -3.6244 2.2502 44 1 -0.6770 -2.6405 0.7368 45 1 0.0967 -1.3345 1.6688 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008338569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:34 Heat of formation + Delta-G solvation = -6.786795 kcal Electronic energy + Delta-G solvation = -27197.581750 eV Core-core repulsion = 23599.971962 eV Total energy + Delta-G solvation = -3597.609788 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.09465 -40.58003 -39.04213 -36.89536 -35.80275 -34.49662 -33.65489 -31.96286 -30.89648 -30.25275 -28.89822 -27.27569 -24.59263 -24.27798 -23.93255 -22.95882 -22.21967 -21.28183 -20.63889 -18.81393 -18.54528 -17.76729 -17.23216 -17.08296 -16.66894 -16.28510 -15.91533 -15.59372 -15.50730 -15.25437 -14.81804 -14.63109 -14.47470 -14.22984 -14.14324 -14.02662 -13.74884 -13.51630 -12.99061 -12.98448 -12.72389 -12.65376 -12.53193 -12.32174 -12.24019 -12.11479 -12.08631 -11.73394 -11.64196 -11.30091 -11.07085 -10.65704 -10.59644 -10.32275 -10.09115 -9.66949 -8.72748 -7.92292 -5.39033 0.07469 0.31693 1.37434 1.41715 1.50363 1.57036 2.18433 2.46304 2.80751 2.95225 3.23937 3.36098 3.64441 3.78160 3.81754 3.92869 3.98647 4.06414 4.10470 4.15321 4.25236 4.29075 4.43728 4.45547 4.57951 4.59894 4.62869 4.77992 4.80966 4.88498 4.90518 5.05762 5.06036 5.14044 5.16681 5.18902 5.21664 5.29059 5.30263 5.44630 5.49575 5.57979 5.73523 5.75221 6.32201 6.58163 6.97614 7.07588 7.27961 7.80836 8.31056 9.12327 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.011838 B = 0.004952 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.705831 B = 5653.246219 C = 6463.519913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.051 4.051 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.266 4.266 8 H 0.070 0.930 9 N -0.609 5.609 10 C 0.135 3.865 11 C -0.120 4.120 12 C -0.107 4.107 13 C 0.130 3.870 14 H 0.055 0.945 15 N -0.706 5.706 16 C 0.516 3.484 17 O -0.576 6.576 18 C -0.053 4.053 19 H 0.139 0.861 20 C -0.099 4.099 21 C -0.080 4.080 22 C -0.154 4.154 23 C -0.077 4.077 24 C -0.163 4.163 25 C 0.087 3.913 26 N -0.492 5.492 27 C 0.101 3.899 28 C 0.188 3.812 29 H 0.246 0.754 30 H 0.018 0.982 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.410 0.590 37 H 0.117 0.883 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.058 0.942 41 H 0.155 0.845 42 H 0.170 0.830 43 H 0.184 0.816 44 H -0.012 1.012 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.296 -8.796 11.382 18.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.396 4.396 8 H 0.087 0.913 9 N -0.333 5.333 10 C 0.010 3.990 11 C -0.159 4.159 12 C -0.145 4.145 13 C 0.024 3.976 14 H 0.073 0.927 15 N -0.356 5.356 16 C 0.303 3.697 17 O -0.455 6.455 18 C -0.075 4.075 19 H 0.157 0.843 20 C -0.137 4.137 21 C -0.117 4.117 22 C -0.156 4.156 23 C -0.102 4.102 24 C -0.183 4.183 25 C -0.070 4.070 26 N -0.201 5.201 27 C -0.037 4.037 28 C 0.061 3.939 29 H 0.055 0.945 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.246 0.754 37 H 0.135 0.865 38 H 0.103 0.897 39 H 0.127 0.873 40 H 0.076 0.924 41 H 0.173 0.827 42 H 0.187 0.813 43 H 0.201 0.799 44 H 0.006 0.994 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.465 -8.906 11.360 17.830 hybrid contribution -0.329 1.818 -0.515 1.918 sum -10.794 -7.088 10.845 16.863 Atomic orbital electron populations 1.70197 1.06788 1.25492 1.55165 1.25834 0.96041 1.01711 1.01100 0.85341 0.78124 0.79606 0.77863 1.20163 1.22333 1.19545 1.19508 0.92935 0.86127 1.41025 0.91270 1.44258 1.35924 1.02911 1.50230 1.21192 0.97553 0.85673 0.94606 1.21895 0.96867 1.00142 0.97031 1.21640 0.99007 0.94053 0.99808 1.21526 0.87100 0.97923 0.91080 0.92720 1.45946 1.25616 1.31893 1.32140 1.20803 0.87132 0.80723 0.81092 1.90696 1.47318 1.35578 1.71897 1.20810 0.87175 1.04845 0.94638 0.84341 1.22298 1.02102 0.92241 0.97024 1.20997 0.96094 0.97817 0.96816 1.21832 0.96959 0.96716 1.00112 1.21478 0.93303 1.01165 0.94300 1.22488 1.02365 0.94376 0.99051 1.23161 0.91154 0.96437 0.96236 1.66632 1.08824 1.37728 1.06928 1.21418 0.95320 0.91227 0.95743 1.20658 0.87660 0.97215 0.88387 0.94543 0.96395 0.92374 0.88315 0.92731 0.89464 0.91369 0.75362 0.86483 0.89719 0.87260 0.92364 0.82736 0.81268 0.79864 0.99434 0.94102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.41 11.19 21.65 0.24 -59.16 16 2 C -0.05 -3.10 4.92 84.86 0.42 -2.68 16 3 Si 0.96 48.41 29.59 68.60 2.03 50.44 16 4 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 5 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 6 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 7 C -0.27 -15.67 9.58 84.03 0.81 -14.86 16 8 H 0.07 3.93 7.89 -2.91 -0.02 3.90 16 9 N -0.61 -32.76 2.99 -699.08 -2.09 -34.86 16 10 C 0.13 5.70 6.52 86.36 0.56 6.26 16 11 C -0.12 -3.93 6.08 30.67 0.19 -3.74 16 12 C -0.11 -3.43 5.36 30.62 0.16 -3.27 16 13 C 0.13 5.42 2.60 45.07 0.12 5.54 16 14 H 0.05 2.59 7.58 -2.39 -0.02 2.57 16 15 N -0.71 -25.50 5.02 -442.16 -2.22 -27.72 16 16 C 0.52 19.38 7.13 87.66 0.62 20.00 16 17 O -0.58 -26.90 15.12 -3.04 -0.05 -26.95 16 18 C -0.05 -1.46 3.26 -11.58 -0.04 -1.49 16 19 H 0.14 2.95 8.14 -2.39 -0.02 2.93 16 20 C -0.10 -2.35 6.38 31.51 0.20 -2.15 16 21 C -0.08 -2.03 6.76 30.48 0.21 -1.82 16 22 C -0.15 -4.25 6.16 -19.54 -0.12 -4.37 16 23 C -0.08 -1.79 10.17 22.47 0.23 -1.56 16 24 C -0.16 -3.39 10.12 22.35 0.23 -3.17 16 25 C 0.09 2.03 11.18 84.71 0.95 2.98 16 26 N -0.49 -13.98 10.34 -182.92 -1.89 -15.87 16 27 C 0.10 2.93 6.58 42.81 0.28 3.21 16 28 C 0.19 10.00 4.88 86.36 0.42 10.42 16 29 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 30 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 2.38 7.93 -2.39 -0.02 2.37 16 32 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.41 12.67 8.60 -92.71 -0.80 11.87 16 37 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.08 2.33 6.96 -2.39 -0.02 2.32 16 39 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.15 2.75 8.06 -2.91 -0.02 2.72 16 42 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 43 H 0.18 3.06 8.06 -2.91 -0.02 3.03 16 44 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 45 H 0.04 2.59 6.07 -2.39 -0.01 2.57 16 Total: -1.00 -80.23 362.17 1.45 -78.78 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.20 Total: 26.04 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 5.23 Total: 9.30 kcal Atomic # 7 Polarization: -131.65 SS G_CDS: -5.96 Total: -137.61 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.95 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal Total: -80.23 1.45 -78.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008338569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.992 kcal (2) G-P(sol) polarization free energy of solvation -80.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds