Wall clock time and date at job start Tue Mar 31 2020 11:57:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31613 * 1
3 3 Si 1.86804 * 119.99948 * 2 1
4 4 H 1.48494 * 109.47217 * 179.97438 * 3 2 1
5 5 H 1.48504 * 109.46899 * 300.00029 * 3 2 1
6 6 H 1.48502 * 109.46993 * 59.99808 * 3 2 1
7 7 C 1.38814 * 120.00261 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00088 * 163.07545 * 7 2 1
9 9 N 1.36935 * 119.99745 * 343.07824 * 7 2 1
10 10 C 1.46929 * 120.63370 * 331.82999 * 9 7 2
11 11 C 1.53183 * 108.77795 * 233.58763 * 10 9 7
12 12 C 1.53039 * 109.31528 * 305.36545 * 11 10 9
13 13 C 1.53041 * 109.52609 * 61.37195 * 12 11 10
14 14 H 1.09001 * 109.49937 * 58.57847 * 13 12 11
15 15 N 1.46502 * 109.49999 * 178.67841 * 13 12 11
16 16 C 1.34778 * 120.00170 * 205.00190 * 15 13 12
17 17 O 1.21276 * 120.00011 * 359.97438 * 16 15 13
18 18 C 1.50701 * 119.99927 * 180.02562 * 16 15 13
19 19 H 1.08992 * 110.26275 * 60.59394 * 18 16 15
20 20 C 1.54338 * 110.29401 * 182.75664 * 18 16 15
21 21 C 1.54367 * 102.38709 * 145.27457 * 20 18 16
22 22 C 1.51224 * 105.12333 * 333.70451 * 21 20 18
23 23 C 1.38740 * 130.69780 * 197.14855 * 22 21 20
24 24 C 1.38577 * 118.55515 * 179.97438 * 23 22 21
25 25 C 1.38222 * 118.99185 * 359.97438 * 24 23 22
26 26 N 1.31686 * 120.80173 * 0.02562 * 25 24 23
27 27 C 1.32290 * 122.02980 * 0.02562 * 26 25 24
28 28 C 1.46928 * 120.63092 * 151.81211 * 9 7 2
29 29 H 0.97004 * 120.00436 * 359.97438 * 1 2 3
30 30 H 1.09002 * 109.58075 * 113.80125 * 10 9 7
31 31 H 1.09002 * 109.58293 * 353.37826 * 10 9 7
32 32 H 1.09002 * 109.49989 * 185.41061 * 11 10 9
33 33 H 1.09002 * 109.49621 * 65.31834 * 11 10 9
34 34 H 1.09000 * 109.46313 * 181.38088 * 12 11 10
35 35 H 1.09000 * 109.45939 * 301.35793 * 12 11 10
36 36 H 0.96998 * 120.00051 * 24.99346 * 15 13 12
37 37 H 1.08994 * 110.82090 * 263.49624 * 20 18 16
38 38 H 1.09000 * 110.82268 * 27.05404 * 20 18 16
39 39 H 1.09007 * 110.31113 * 214.79605 * 21 20 18
40 40 H 1.08994 * 110.39873 * 92.66711 * 21 20 18
41 41 H 1.08002 * 120.71771 * 359.95029 * 23 22 21
42 42 H 1.08001 * 120.50230 * 179.97438 * 24 23 22
43 43 H 1.08004 * 119.59486 * 180.02562 * 25 24 23
44 44 H 1.09003 * 109.58888 * 246.19990 * 28 9 7
45 45 H 1.09004 * 109.58643 * 6.48127 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7101 1.3465 0.0006
5 1 1.8913 2.3965 -1.2125
6 1 1.8913 2.3965 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0552 -1.2225 -0.2717
9 7 1.3701 -2.3622 0.3462
10 6 0.2262 -2.3399 1.2681
11 6 0.4976 -3.3191 2.4145
12 6 0.8120 -4.7008 1.8363
13 6 2.0675 -4.6171 0.9651
14 1 2.9024 -4.2532 1.5640
15 7 2.3860 -5.9461 0.4374
16 6 3.6523 -6.2461 0.0864
17 8 4.5279 -5.4158 0.2070
18 6 3.9798 -7.6131 -0.4569
19 1 3.4198 -7.7992 -1.3733
20 6 5.4958 -7.7358 -0.7191
21 6 5.7729 -9.2146 -0.3738
22 6 4.6986 -9.5958 0.6200
23 6 4.6200 -10.6638 1.5020
24 6 3.5015 -10.7721 2.3130
25 6 2.5081 -9.8161 2.2154
26 7 2.6164 -8.8153 1.3664
27 6 3.6673 -8.6774 0.5748
28 6 1.8137 -3.6529 -0.1980
29 1 -0.4851 0.8400 0.0004
30 1 -0.6770 -2.6405 0.7370
31 1 0.0994 -1.3342 1.6688
32 1 -0.3829 -3.3840 3.0537
33 1 1.3474 -2.9676 2.9996
34 1 0.9815 -5.4052 2.6506
35 1 -0.0281 -5.0408 1.2308
36 1 1.6857 -6.6102 0.3407
37 1 5.7258 -7.5325 -1.7649
38 1 6.0576 -7.0726 -0.0615
39 1 6.7598 -9.3194 0.0771
40 1 5.6984 -9.8339 -1.2677
41 1 5.4130 -11.3950 1.5551
42 1 3.4076 -11.5912 3.0107
43 1 1.6324 -9.8908 2.8431
44 1 1.0399 -4.0605 -0.8486
45 1 2.7330 -3.5130 -0.7667
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001008338580.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:57:39
Heat of formation + Delta-G solvation = 14.868510 kcal
Electronic energy + Delta-G solvation = -26442.355448 eV
Core-core repulsion = 22845.684705 eV
Total energy + Delta-G solvation = -3596.670743 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-41.20534 -39.32994 -37.41188 -36.07224 -34.19014 -33.02049 -32.23479 -30.38859
-29.64649 -29.24481 -27.70373 -25.20707 -23.75070 -23.01698 -22.04817 -21.96882
-21.05288 -19.85612 -19.16775 -17.30182 -16.94293 -16.70091 -16.52772 -15.66229
-15.25941 -14.89393 -14.61172 -14.38133 -13.91772 -13.78350 -13.60353 -13.37062
-13.35258 -13.12652 -12.82984 -12.36554 -12.26810 -12.14077 -11.92019 -11.90782
-11.58712 -11.24738 -11.02024 -10.82246 -10.72534 -10.18007 -10.14607 -10.08876
-9.87881 -9.83380 -9.59944 -9.53242 -9.41051 -8.92933 -8.67236 -8.32177
-6.59847 -5.72496 -3.14726 0.79686 1.00336 2.85312 3.39175 3.42813
3.50372 3.54621 3.61195 3.71743 4.10236 4.48740 4.56859 4.58289
4.65327 4.83646 4.90265 5.03511 5.18092 5.26199 5.33059 5.39456
5.47670 5.49909 5.56486 5.64796 5.71652 5.76004 5.84640 5.86187
5.94979 6.05312 6.18599 6.27294 6.36296 6.39893 6.63000 6.69359
6.79254 6.81432 6.93463 7.11325 7.43181 7.71027 7.72434 7.89054
7.92687 8.50760 8.59664 9.28461 9.90955 10.47227 11.36152
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.023232 B = 0.003173 C = 0.002880
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1204.959957 B = 8821.192975 C = 9718.321818
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.904 5.904
2 C 0.001 3.999
3 Si 0.902 3.098
4 H -0.277 1.277
5 H -0.291 1.291
6 H -0.289 1.289
7 C -0.248 4.248
8 H 0.067 0.933
9 N -0.588 5.588
10 C 0.168 3.832
11 C -0.140 4.140
12 C -0.112 4.112
13 C 0.127 3.873
14 H 0.083 0.917
15 N -0.708 5.708
16 C 0.521 3.479
17 O -0.538 6.538
18 C -0.062 4.062
19 H 0.119 0.881
20 C -0.103 4.103
21 C -0.080 4.080
22 C -0.143 4.143
23 C -0.066 4.066
24 C -0.173 4.173
25 C 0.105 3.895
26 N -0.471 5.471
27 C 0.127 3.873
28 C 0.143 3.857
29 H 0.252 0.748
30 H 0.018 0.982
31 H 0.088 0.912
32 H 0.053 0.947
33 H 0.056 0.944
34 H 0.050 0.950
35 H 0.058 0.942
36 H 0.401 0.599
37 H 0.089 0.911
38 H 0.095 0.905
39 H 0.081 0.919
40 H 0.085 0.915
41 H 0.132 0.868
42 H 0.137 0.863
43 H 0.159 0.841
44 H 0.017 0.983
45 H 0.057 0.943
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.426 -24.490 2.563 25.448
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.549 5.549
2 C -0.197 4.197
3 Si 0.732 3.268
4 H -0.202 1.202
5 H -0.218 1.218
6 H -0.216 1.216
7 C -0.377 4.377
8 H 0.084 0.916
9 N -0.311 5.311
10 C 0.042 3.958
11 C -0.179 4.179
12 C -0.151 4.151
13 C 0.022 3.978
14 H 0.101 0.899
15 N -0.358 5.358
16 C 0.305 3.695
17 O -0.415 6.415
18 C -0.084 4.084
19 H 0.137 0.863
20 C -0.141 4.141
21 C -0.117 4.117
22 C -0.145 4.145
23 C -0.092 4.092
24 C -0.193 4.193
25 C -0.053 4.053
26 N -0.179 5.179
27 C -0.011 4.011
28 C 0.015 3.985
29 H 0.062 0.938
30 H 0.037 0.963
31 H 0.106 0.894
32 H 0.072 0.928
33 H 0.075 0.925
34 H 0.069 0.931
35 H 0.077 0.923
36 H 0.235 0.765
37 H 0.107 0.893
38 H 0.114 0.886
39 H 0.100 0.900
40 H 0.104 0.896
41 H 0.150 0.850
42 H 0.155 0.845
43 H 0.176 0.824
44 H 0.034 0.966
45 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges 6.265 -23.094 2.603 24.070
hybrid contribution 0.513 -0.289 0.118 0.600
sum 6.778 -23.383 2.722 24.497
Atomic orbital electron populations
1.70048 1.05231 1.25291 1.54340 1.25030 0.95297 0.98363 1.01017
0.86220 0.79529 0.83887 0.77190 1.20163 1.21771 1.21583 1.19274
0.92662 0.84658 1.41156 0.91557 1.44008 1.35676 1.01219 1.50207
1.20829 0.88590 0.98366 0.87968 1.22182 1.00320 0.95387 1.00040
1.21643 0.96772 0.98296 0.98340 1.21705 0.97704 0.81500 0.96934
0.89924 1.46060 1.09226 1.15860 1.64618 1.20013 0.83050 0.88235
0.78159 1.90717 1.46851 1.49642 1.54252 1.20946 0.99400 0.90930
0.97136 0.86317 1.22290 0.92392 0.95645 1.03764 1.21032 0.97005
0.96630 0.97050 1.21452 0.98376 0.96187 0.98450 1.21066 0.97839
0.96519 0.93750 1.22093 0.95184 1.01132 1.00847 1.22654 0.98388
0.89216 0.95010 1.66793 1.24269 1.22185 1.04696 1.21438 0.90166
0.94941 0.94587 1.21187 0.97835 0.86777 0.92669 0.93774 0.96340
0.89371 0.92818 0.92546 0.93077 0.92322 0.76475 0.89273 0.88632
0.90012 0.89631 0.84962 0.84536 0.82400 0.96557 0.92471
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.81 11.20 55.49 0.62 -26.19 16
2 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16
3 Si 0.90 22.46 29.59 -169.99 -5.03 17.43 16
4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16
5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16
7 C -0.25 -7.15 9.58 -15.06 -0.14 -7.29 16
8 H 0.07 1.93 7.89 -52.49 -0.41 1.52 16
9 N -0.59 -15.47 2.99 -172.32 -0.52 -15.99 16
10 C 0.17 4.11 5.30 -3.71 -0.02 4.09 16
11 C -0.14 -2.74 6.08 -26.62 -0.16 -2.91 16
12 C -0.11 -1.97 5.35 -26.69 -0.14 -2.11 16
13 C 0.13 2.45 2.60 -67.81 -0.18 2.28 16
14 H 0.08 1.83 7.58 -51.93 -0.39 1.43 16
15 N -0.71 -11.42 4.85 -53.69 -0.26 -11.68 16
16 C 0.52 8.50 7.14 -10.98 -0.08 8.42 16
17 O -0.54 -10.87 15.18 5.56 0.08 -10.79 16
18 C -0.06 -0.74 3.26 -91.84 -0.30 -1.04 16
19 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16
20 C -0.10 -1.04 6.32 -25.31 -0.16 -1.20 16
21 C -0.08 -0.62 6.77 -26.91 -0.18 -0.81 16
22 C -0.14 -1.39 6.16 -104.20 -0.64 -2.03 16
23 C -0.07 -0.53 10.17 -39.27 -0.40 -0.93 16
24 C -0.17 -1.33 10.12 -39.46 -0.40 -1.73 16
25 C 0.10 0.99 11.18 -17.62 -0.20 0.79 16
26 N -0.47 -5.68 9.59 -9.19 -0.09 -5.76 16
27 C 0.13 1.49 6.57 -82.03 -0.54 0.95 16
28 C 0.14 3.26 6.09 -3.71 -0.02 3.24 16
29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16
30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16
31 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16
32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16
33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16
36 H 0.40 5.67 8.00 -40.82 -0.33 5.34 16
37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16
38 H 0.10 1.18 7.06 -51.93 -0.37 0.81 16
39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16
41 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16
42 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16
43 H 0.16 1.09 8.06 -52.48 -0.42 0.66 16
44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16
45 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16
LS Contribution 360.76 15.07 5.44 5.44
Total: -1.00 -33.94 360.76 -10.26 -44.20
By element:
Atomic # 1 Polarization: 10.54 SS G_CDS: -6.86 Total: 3.68 kcal
Atomic # 6 Polarization: 3.31 SS G_CDS: -3.65 Total: -0.34 kcal
Atomic # 7 Polarization: -59.37 SS G_CDS: -0.24 Total: -59.62 kcal
Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal
Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal
Total LS contribution 5.44 Total: 5.44 kcal
Total: -33.94 -10.26 -44.20 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001008338580.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.067 kcal
(2) G-P(sol) polarization free energy of solvation -33.939 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.128 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.199 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.869 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds