Wall clock time and date at job start Tue Mar 31 2020 11:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99948 * 2 1 4 4 H 1.48494 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46899 * 300.00029 * 3 2 1 6 6 H 1.48502 * 109.46993 * 59.99808 * 3 2 1 7 7 C 1.38814 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00088 * 163.07545 * 7 2 1 9 9 N 1.36935 * 119.99745 * 343.07824 * 7 2 1 10 10 C 1.46929 * 120.63370 * 331.82999 * 9 7 2 11 11 C 1.53183 * 108.77795 * 233.58763 * 10 9 7 12 12 C 1.53039 * 109.31528 * 305.36545 * 11 10 9 13 13 C 1.53041 * 109.52609 * 61.37195 * 12 11 10 14 14 H 1.09001 * 109.49937 * 58.57847 * 13 12 11 15 15 N 1.46502 * 109.49999 * 178.67841 * 13 12 11 16 16 C 1.34778 * 120.00170 * 205.00190 * 15 13 12 17 17 O 1.21276 * 120.00011 * 359.97438 * 16 15 13 18 18 C 1.50701 * 119.99927 * 180.02562 * 16 15 13 19 19 H 1.08992 * 110.26275 * 60.59394 * 18 16 15 20 20 C 1.54338 * 110.29401 * 182.75664 * 18 16 15 21 21 C 1.54367 * 102.38709 * 145.27457 * 20 18 16 22 22 C 1.51224 * 105.12333 * 333.70451 * 21 20 18 23 23 C 1.38740 * 130.69780 * 197.14855 * 22 21 20 24 24 C 1.38577 * 118.55515 * 179.97438 * 23 22 21 25 25 C 1.38222 * 118.99185 * 359.97438 * 24 23 22 26 26 N 1.31686 * 120.80173 * 0.02562 * 25 24 23 27 27 C 1.32290 * 122.02980 * 0.02562 * 26 25 24 28 28 C 1.46928 * 120.63092 * 151.81211 * 9 7 2 29 29 H 0.97004 * 120.00436 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.58075 * 113.80125 * 10 9 7 31 31 H 1.09002 * 109.58293 * 353.37826 * 10 9 7 32 32 H 1.09002 * 109.49989 * 185.41061 * 11 10 9 33 33 H 1.09002 * 109.49621 * 65.31834 * 11 10 9 34 34 H 1.09000 * 109.46313 * 181.38088 * 12 11 10 35 35 H 1.09000 * 109.45939 * 301.35793 * 12 11 10 36 36 H 0.96998 * 120.00051 * 24.99346 * 15 13 12 37 37 H 1.08994 * 110.82090 * 263.49624 * 20 18 16 38 38 H 1.09000 * 110.82268 * 27.05404 * 20 18 16 39 39 H 1.09007 * 110.31113 * 214.79605 * 21 20 18 40 40 H 1.08994 * 110.39873 * 92.66711 * 21 20 18 41 41 H 1.08002 * 120.71771 * 359.95029 * 23 22 21 42 42 H 1.08001 * 120.50230 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.59486 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.58888 * 246.19990 * 28 9 7 45 45 H 1.09004 * 109.58643 * 6.48127 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3462 10 6 0.2262 -2.3399 1.2681 11 6 0.4976 -3.3191 2.4145 12 6 0.8120 -4.7008 1.8363 13 6 2.0675 -4.6171 0.9651 14 1 2.9024 -4.2532 1.5640 15 7 2.3860 -5.9461 0.4374 16 6 3.6523 -6.2461 0.0864 17 8 4.5279 -5.4158 0.2070 18 6 3.9798 -7.6131 -0.4569 19 1 3.4198 -7.7992 -1.3733 20 6 5.4958 -7.7358 -0.7191 21 6 5.7729 -9.2146 -0.3738 22 6 4.6986 -9.5958 0.6200 23 6 4.6200 -10.6638 1.5020 24 6 3.5015 -10.7721 2.3130 25 6 2.5081 -9.8161 2.2154 26 7 2.6164 -8.8153 1.3664 27 6 3.6673 -8.6774 0.5748 28 6 1.8137 -3.6529 -0.1980 29 1 -0.4851 0.8400 0.0004 30 1 -0.6770 -2.6405 0.7370 31 1 0.0994 -1.3342 1.6688 32 1 -0.3829 -3.3840 3.0537 33 1 1.3474 -2.9676 2.9996 34 1 0.9815 -5.4052 2.6506 35 1 -0.0281 -5.0408 1.2308 36 1 1.6857 -6.6102 0.3407 37 1 5.7258 -7.5325 -1.7649 38 1 6.0576 -7.0726 -0.0615 39 1 6.7598 -9.3194 0.0771 40 1 5.6984 -9.8339 -1.2677 41 1 5.4130 -11.3950 1.5551 42 1 3.4076 -11.5912 3.0107 43 1 1.6324 -9.8908 2.8431 44 1 1.0399 -4.0605 -0.8486 45 1 2.7330 -3.5130 -0.7667 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008338580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:39 Heat of formation + Delta-G solvation = 14.868510 kcal Electronic energy + Delta-G solvation = -26442.355448 eV Core-core repulsion = 22845.684705 eV Total energy + Delta-G solvation = -3596.670743 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.20534 -39.32994 -37.41188 -36.07224 -34.19014 -33.02049 -32.23479 -30.38859 -29.64649 -29.24481 -27.70373 -25.20707 -23.75070 -23.01698 -22.04817 -21.96882 -21.05288 -19.85612 -19.16775 -17.30182 -16.94293 -16.70091 -16.52772 -15.66229 -15.25941 -14.89393 -14.61172 -14.38133 -13.91772 -13.78350 -13.60353 -13.37062 -13.35258 -13.12652 -12.82984 -12.36554 -12.26810 -12.14077 -11.92019 -11.90782 -11.58712 -11.24738 -11.02024 -10.82246 -10.72534 -10.18007 -10.14607 -10.08876 -9.87881 -9.83380 -9.59944 -9.53242 -9.41051 -8.92933 -8.67236 -8.32177 -6.59847 -5.72496 -3.14726 0.79686 1.00336 2.85312 3.39175 3.42813 3.50372 3.54621 3.61195 3.71743 4.10236 4.48740 4.56859 4.58289 4.65327 4.83646 4.90265 5.03511 5.18092 5.26199 5.33059 5.39456 5.47670 5.49909 5.56486 5.64796 5.71652 5.76004 5.84640 5.86187 5.94979 6.05312 6.18599 6.27294 6.36296 6.39893 6.63000 6.69359 6.79254 6.81432 6.93463 7.11325 7.43181 7.71027 7.72434 7.89054 7.92687 8.50760 8.59664 9.28461 9.90955 10.47227 11.36152 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023232 B = 0.003173 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.959957 B = 8821.192975 C = 9718.321818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.248 4.248 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.168 3.832 11 C -0.140 4.140 12 C -0.112 4.112 13 C 0.127 3.873 14 H 0.083 0.917 15 N -0.708 5.708 16 C 0.521 3.479 17 O -0.538 6.538 18 C -0.062 4.062 19 H 0.119 0.881 20 C -0.103 4.103 21 C -0.080 4.080 22 C -0.143 4.143 23 C -0.066 4.066 24 C -0.173 4.173 25 C 0.105 3.895 26 N -0.471 5.471 27 C 0.127 3.873 28 C 0.143 3.857 29 H 0.252 0.748 30 H 0.018 0.982 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.401 0.599 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.159 0.841 44 H 0.017 0.983 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.426 -24.490 2.563 25.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.377 4.377 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.042 3.958 11 C -0.179 4.179 12 C -0.151 4.151 13 C 0.022 3.978 14 H 0.101 0.899 15 N -0.358 5.358 16 C 0.305 3.695 17 O -0.415 6.415 18 C -0.084 4.084 19 H 0.137 0.863 20 C -0.141 4.141 21 C -0.117 4.117 22 C -0.145 4.145 23 C -0.092 4.092 24 C -0.193 4.193 25 C -0.053 4.053 26 N -0.179 5.179 27 C -0.011 4.011 28 C 0.015 3.985 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.235 0.765 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.176 0.824 44 H 0.034 0.966 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.265 -23.094 2.603 24.070 hybrid contribution 0.513 -0.289 0.118 0.600 sum 6.778 -23.383 2.722 24.497 Atomic orbital electron populations 1.70048 1.05231 1.25291 1.54340 1.25030 0.95297 0.98363 1.01017 0.86220 0.79529 0.83887 0.77190 1.20163 1.21771 1.21583 1.19274 0.92662 0.84658 1.41156 0.91557 1.44008 1.35676 1.01219 1.50207 1.20829 0.88590 0.98366 0.87968 1.22182 1.00320 0.95387 1.00040 1.21643 0.96772 0.98296 0.98340 1.21705 0.97704 0.81500 0.96934 0.89924 1.46060 1.09226 1.15860 1.64618 1.20013 0.83050 0.88235 0.78159 1.90717 1.46851 1.49642 1.54252 1.20946 0.99400 0.90930 0.97136 0.86317 1.22290 0.92392 0.95645 1.03764 1.21032 0.97005 0.96630 0.97050 1.21452 0.98376 0.96187 0.98450 1.21066 0.97839 0.96519 0.93750 1.22093 0.95184 1.01132 1.00847 1.22654 0.98388 0.89216 0.95010 1.66793 1.24269 1.22185 1.04696 1.21438 0.90166 0.94941 0.94587 1.21187 0.97835 0.86777 0.92669 0.93774 0.96340 0.89371 0.92818 0.92546 0.93077 0.92322 0.76475 0.89273 0.88632 0.90012 0.89631 0.84962 0.84536 0.82400 0.96557 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 11.20 55.49 0.62 -26.19 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 22.46 29.59 -169.99 -5.03 17.43 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.25 -7.15 9.58 -15.06 -0.14 -7.29 16 8 H 0.07 1.93 7.89 -52.49 -0.41 1.52 16 9 N -0.59 -15.47 2.99 -172.32 -0.52 -15.99 16 10 C 0.17 4.11 5.30 -3.71 -0.02 4.09 16 11 C -0.14 -2.74 6.08 -26.62 -0.16 -2.91 16 12 C -0.11 -1.97 5.35 -26.69 -0.14 -2.11 16 13 C 0.13 2.45 2.60 -67.81 -0.18 2.28 16 14 H 0.08 1.83 7.58 -51.93 -0.39 1.43 16 15 N -0.71 -11.42 4.85 -53.69 -0.26 -11.68 16 16 C 0.52 8.50 7.14 -10.98 -0.08 8.42 16 17 O -0.54 -10.87 15.18 5.56 0.08 -10.79 16 18 C -0.06 -0.74 3.26 -91.84 -0.30 -1.04 16 19 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 20 C -0.10 -1.04 6.32 -25.31 -0.16 -1.20 16 21 C -0.08 -0.62 6.77 -26.91 -0.18 -0.81 16 22 C -0.14 -1.39 6.16 -104.20 -0.64 -2.03 16 23 C -0.07 -0.53 10.17 -39.27 -0.40 -0.93 16 24 C -0.17 -1.33 10.12 -39.46 -0.40 -1.73 16 25 C 0.10 0.99 11.18 -17.62 -0.20 0.79 16 26 N -0.47 -5.68 9.59 -9.19 -0.09 -5.76 16 27 C 0.13 1.49 6.57 -82.03 -0.54 0.95 16 28 C 0.14 3.26 6.09 -3.71 -0.02 3.24 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.40 5.67 8.00 -40.82 -0.33 5.34 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 1.18 7.06 -51.93 -0.37 0.81 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.16 1.09 8.06 -52.48 -0.42 0.66 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -33.94 360.76 -10.26 -44.20 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.86 Total: 3.68 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -3.65 Total: -0.34 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.24 Total: -59.62 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.03 Total: 17.43 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.94 -10.26 -44.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008338580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.067 kcal (2) G-P(sol) polarization free energy of solvation -33.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds