Wall clock time and date at job start Tue Mar 31 2020 11:57:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31613 * 1
3 3 Si 1.86804 * 119.99948 * 2 1
4 4 H 1.48494 * 109.47217 * 179.97438 * 3 2 1
5 5 H 1.48504 * 109.46899 * 300.00029 * 3 2 1
6 6 H 1.48502 * 109.46993 * 59.99808 * 3 2 1
7 7 C 1.38814 * 120.00261 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00088 * 163.07545 * 7 2 1
9 9 N 1.36935 * 119.99745 * 343.07824 * 7 2 1
10 10 C 1.46929 * 120.63370 * 331.82999 * 9 7 2
11 11 C 1.53183 * 108.77795 * 233.58763 * 10 9 7
12 12 C 1.53039 * 109.31528 * 305.36545 * 11 10 9
13 13 C 1.53041 * 109.52609 * 61.37195 * 12 11 10
14 14 H 1.09001 * 109.49937 * 58.57847 * 13 12 11
15 15 N 1.46502 * 109.49999 * 178.67841 * 13 12 11
16 16 C 1.34778 * 120.00170 * 205.00190 * 15 13 12
17 17 O 1.21276 * 120.00011 * 359.97438 * 16 15 13
18 18 C 1.50701 * 119.99927 * 180.02562 * 16 15 13
19 19 H 1.08992 * 110.26275 * 60.59394 * 18 16 15
20 20 C 1.54338 * 110.29401 * 182.75664 * 18 16 15
21 21 C 1.54367 * 102.38709 * 145.27457 * 20 18 16
22 22 C 1.51224 * 105.12333 * 333.70451 * 21 20 18
23 23 C 1.38740 * 130.69780 * 197.14855 * 22 21 20
24 24 C 1.38577 * 118.55515 * 179.97438 * 23 22 21
25 25 C 1.38222 * 118.99185 * 359.97438 * 24 23 22
26 26 N 1.31686 * 120.80173 * 0.02562 * 25 24 23
27 27 C 1.32290 * 122.02980 * 0.02562 * 26 25 24
28 28 C 1.46928 * 120.63092 * 151.81211 * 9 7 2
29 29 H 0.97004 * 120.00436 * 359.97438 * 1 2 3
30 30 H 1.09002 * 109.58075 * 113.80125 * 10 9 7
31 31 H 1.09002 * 109.58293 * 353.37826 * 10 9 7
32 32 H 1.09002 * 109.49989 * 185.41061 * 11 10 9
33 33 H 1.09002 * 109.49621 * 65.31834 * 11 10 9
34 34 H 1.09000 * 109.46313 * 181.38088 * 12 11 10
35 35 H 1.09000 * 109.45939 * 301.35793 * 12 11 10
36 36 H 0.96998 * 120.00051 * 24.99346 * 15 13 12
37 37 H 1.08994 * 110.82090 * 263.49624 * 20 18 16
38 38 H 1.09000 * 110.82268 * 27.05404 * 20 18 16
39 39 H 1.09007 * 110.31113 * 214.79605 * 21 20 18
40 40 H 1.08994 * 110.39873 * 92.66711 * 21 20 18
41 41 H 1.08002 * 120.71771 * 359.95029 * 23 22 21
42 42 H 1.08001 * 120.50230 * 179.97438 * 24 23 22
43 43 H 1.08004 * 119.59486 * 180.02562 * 25 24 23
44 44 H 1.09003 * 109.58888 * 246.19990 * 28 9 7
45 45 H 1.09004 * 109.58643 * 6.48127 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 3.7101 1.3465 0.0006
5 1 1.8913 2.3965 -1.2125
6 1 1.8913 2.3965 1.2125
7 6 2.0103 -1.2021 0.0005
8 1 3.0552 -1.2225 -0.2717
9 7 1.3701 -2.3622 0.3462
10 6 0.2262 -2.3399 1.2681
11 6 0.4976 -3.3191 2.4145
12 6 0.8120 -4.7008 1.8363
13 6 2.0675 -4.6171 0.9651
14 1 2.9024 -4.2532 1.5640
15 7 2.3860 -5.9461 0.4374
16 6 3.6523 -6.2461 0.0864
17 8 4.5279 -5.4158 0.2070
18 6 3.9798 -7.6131 -0.4569
19 1 3.4198 -7.7992 -1.3733
20 6 5.4958 -7.7358 -0.7191
21 6 5.7729 -9.2146 -0.3738
22 6 4.6986 -9.5958 0.6200
23 6 4.6200 -10.6638 1.5020
24 6 3.5015 -10.7721 2.3130
25 6 2.5081 -9.8161 2.2154
26 7 2.6164 -8.8153 1.3664
27 6 3.6673 -8.6774 0.5748
28 6 1.8137 -3.6529 -0.1980
29 1 -0.4851 0.8400 0.0004
30 1 -0.6770 -2.6405 0.7370
31 1 0.0994 -1.3342 1.6688
32 1 -0.3829 -3.3840 3.0537
33 1 1.3474 -2.9676 2.9996
34 1 0.9815 -5.4052 2.6506
35 1 -0.0281 -5.0408 1.2308
36 1 1.6857 -6.6102 0.3407
37 1 5.7258 -7.5325 -1.7649
38 1 6.0576 -7.0726 -0.0615
39 1 6.7598 -9.3194 0.0771
40 1 5.6984 -9.8339 -1.2677
41 1 5.4130 -11.3950 1.5551
42 1 3.4076 -11.5912 3.0107
43 1 1.6324 -9.8908 2.8431
44 1 1.0399 -4.0605 -0.8486
45 1 2.7330 -3.5130 -0.7667
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001008338580.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:57:38
Heat of formation + Delta-G solvation = -6.948266 kcal
Electronic energy + Delta-G solvation = -26443.301495 eV
Core-core repulsion = 22845.684705 eV
Total energy + Delta-G solvation = -3597.616790 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-42.03059 -40.60057 -39.03177 -36.96616 -35.89828 -34.23944 -33.54099 -32.36401
-30.76996 -30.22220 -28.83741 -27.27448 -24.43331 -24.30816 -23.88168 -22.96786
-22.14241 -21.28468 -20.67853 -18.73850 -18.41894 -17.71078 -17.37667 -17.08856
-16.64841 -16.23347 -15.84855 -15.68375 -15.55818 -15.14427 -14.77220 -14.68060
-14.46075 -14.21184 -14.15558 -13.99754 -13.64271 -13.46601 -13.05590 -12.95136
-12.78911 -12.60802 -12.54502 -12.52384 -12.12905 -12.00832 -11.98488 -11.79120
-11.60706 -11.32683 -10.98075 -10.64016 -10.61468 -10.24710 -10.06649 -9.66452
-8.71103 -7.91983 -5.38338 0.12097 0.36880 1.42749 1.44085 1.56197
1.60275 2.17506 2.49880 2.83956 2.95319 3.21979 3.35227 3.63575
3.76838 3.85294 3.91191 3.98408 4.09071 4.12169 4.21248 4.24723
4.31973 4.44798 4.47768 4.56803 4.60213 4.65860 4.77307 4.84313
4.89557 4.98555 4.99858 5.07528 5.09542 5.15229 5.23318 5.24436
5.26391 5.32025 5.46981 5.57729 5.60827 5.73230 5.79054 6.35074
6.61214 7.02488 7.10837 7.29712 7.79824 8.30957 9.13981
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.023232 B = 0.003173 C = 0.002880
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1204.959957 B = 8821.192975 C = 9718.321818
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.929 5.929
2 C -0.044 4.044
3 Si 0.967 3.033
4 H -0.274 1.274
5 H -0.286 1.286
6 H -0.283 1.283
7 C -0.269 4.269
8 H 0.053 0.947
9 N -0.607 5.607
10 C 0.173 3.827
11 C -0.129 4.129
12 C -0.101 4.101
13 C 0.143 3.857
14 H 0.051 0.949
15 N -0.698 5.698
16 C 0.516 3.484
17 O -0.584 6.584
18 C -0.055 4.055
19 H 0.137 0.863
20 C -0.104 4.104
21 C -0.070 4.070
22 C -0.148 4.148
23 C -0.069 4.069
24 C -0.163 4.163
25 C 0.087 3.913
26 N -0.500 5.500
27 C 0.095 3.905
28 C 0.148 3.852
29 H 0.253 0.747
30 H 0.005 0.995
31 H 0.056 0.944
32 H 0.085 0.915
33 H 0.046 0.954
34 H 0.079 0.921
35 H 0.073 0.927
36 H 0.414 0.586
37 H 0.104 0.896
38 H 0.066 0.934
39 H 0.095 0.905
40 H 0.110 0.890
41 H 0.163 0.837
42 H 0.169 0.831
43 H 0.178 0.822
44 H 0.020 0.980
45 H 0.031 0.969
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.760 -27.404 3.327 28.421
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.575 5.575
2 C -0.240 4.240
3 Si 0.795 3.205
4 H -0.199 1.199
5 H -0.213 1.213
6 H -0.209 1.209
7 C -0.399 4.399
8 H 0.071 0.929
9 N -0.331 5.331
10 C 0.048 3.952
11 C -0.168 4.168
12 C -0.139 4.139
13 C 0.036 3.964
14 H 0.070 0.930
15 N -0.349 5.349
16 C 0.303 3.697
17 O -0.464 6.464
18 C -0.077 4.077
19 H 0.155 0.845
20 C -0.142 4.142
21 C -0.107 4.107
22 C -0.150 4.150
23 C -0.095 4.095
24 C -0.182 4.182
25 C -0.071 4.071
26 N -0.209 5.209
27 C -0.043 4.043
28 C 0.021 3.979
29 H 0.062 0.938
30 H 0.023 0.977
31 H 0.074 0.926
32 H 0.103 0.897
33 H 0.065 0.935
34 H 0.097 0.903
35 H 0.091 0.909
36 H 0.251 0.749
37 H 0.122 0.878
38 H 0.085 0.915
39 H 0.114 0.886
40 H 0.128 0.872
41 H 0.180 0.820
42 H 0.187 0.813
43 H 0.195 0.805
44 H 0.038 0.962
45 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges 6.586 -26.061 3.365 27.090
hybrid contribution 0.398 0.559 -0.117 0.696
sum 6.984 -25.502 3.248 26.640
Atomic orbital electron populations
1.70174 1.06410 1.25999 1.54875 1.25756 0.96160 1.01269 1.00782
0.85217 0.78313 0.79724 0.77250 1.19873 1.21299 1.20931 1.19433
0.92447 0.86289 1.41750 0.92943 1.44238 1.36086 1.01672 1.51136
1.20703 0.87564 0.98011 0.88911 1.22022 1.01294 0.95163 0.98357
1.21558 0.95939 0.97531 0.98878 1.21219 0.97609 0.82274 0.95265
0.93027 1.45910 1.09921 1.14705 1.64336 1.20898 0.82238 0.89630
0.76976 1.90693 1.48070 1.51602 1.56059 1.20976 1.00817 0.87966
0.97953 0.84520 1.22298 0.90790 0.97067 1.04037 1.21031 0.97119
0.94801 0.97763 1.21710 0.98023 0.96314 0.98988 1.21482 0.98729
0.96437 0.92853 1.22483 0.94160 1.01094 1.00491 1.23120 0.99791
0.89199 0.94942 1.66713 1.24899 1.23652 1.05626 1.21408 0.91454
0.95781 0.95614 1.21189 0.96415 0.86454 0.93886 0.93798 0.97660
0.92569 0.89677 0.93535 0.90276 0.90882 0.74945 0.87779 0.91496
0.88650 0.87206 0.81976 0.81309 0.80515 0.96231 0.95059
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.38 11.20 21.65 0.24 -56.14 16
2 C -0.04 -2.57 4.92 84.86 0.42 -2.15 16
3 Si 0.97 47.21 29.59 68.60 2.03 49.24 16
4 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16
5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16
6 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16
7 C -0.27 -16.14 9.58 84.03 0.81 -15.33 16
8 H 0.05 3.21 7.89 -2.91 -0.02 3.19 16
9 N -0.61 -33.16 2.99 -699.09 -2.09 -35.25 16
10 C 0.17 8.67 5.30 86.36 0.46 9.13 16
11 C -0.13 -4.98 6.08 30.67 0.19 -4.79 16
12 C -0.10 -3.41 5.35 30.62 0.16 -3.24 16
13 C 0.14 5.61 2.60 45.07 0.12 5.73 16
14 H 0.05 2.37 7.58 -2.39 -0.02 2.36 16
15 N -0.70 -22.63 4.85 -442.16 -2.14 -24.78 16
16 C 0.52 17.24 7.14 87.66 0.63 17.87 16
17 O -0.58 -24.87 15.18 -3.02 -0.05 -24.92 16
18 C -0.06 -1.29 3.26 -11.58 -0.04 -1.33 16
19 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16
20 C -0.10 -2.04 6.32 31.51 0.20 -1.84 16
21 C -0.07 -0.93 6.77 30.48 0.21 -0.72 16
22 C -0.15 -2.54 6.16 -19.59 -0.12 -2.66 16
23 C -0.07 -0.88 10.17 22.47 0.23 -0.65 16
24 C -0.16 -1.94 10.12 22.35 0.23 -1.72 16
25 C 0.09 1.43 11.18 84.71 0.95 2.38 16
26 N -0.50 -11.32 9.59 -182.98 -1.75 -13.08 16
27 C 0.09 2.11 6.57 42.72 0.28 2.39 16
28 C 0.15 6.99 6.09 86.36 0.53 7.51 16
29 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16
30 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16
31 H 0.06 3.15 6.06 -2.39 -0.01 3.14 16
32 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16
33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16
34 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16
35 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16
36 H 0.41 11.37 8.00 -92.71 -0.74 10.63 16
37 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16
38 H 0.07 1.71 7.06 -2.39 -0.02 1.70 16
39 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16
40 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16
41 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16
42 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16
43 H 0.18 1.99 8.06 -2.91 -0.02 1.96 16
44 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16
45 H 0.03 1.60 7.93 -2.39 -0.02 1.58 16
Total: -1.00 -77.53 360.76 1.72 -75.81
By element:
Atomic # 1 Polarization: 18.30 SS G_CDS: 0.25 Total: 18.55 kcal
Atomic # 6 Polarization: 5.32 SS G_CDS: 5.23 Total: 10.55 kcal
Atomic # 7 Polarization: -123.49 SS G_CDS: -5.75 Total: -129.24 kcal
Atomic # 8 Polarization: -24.87 SS G_CDS: -0.05 Total: -24.92 kcal
Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal
Total: -77.53 1.72 -75.81 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001008338580.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.860 kcal
(2) G-P(sol) polarization free energy of solvation -77.526 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.666 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.809 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.948 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds