Wall clock time and date at job start Tue Mar 31 2020 11:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99948 * 2 1 4 4 H 1.48494 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46899 * 300.00029 * 3 2 1 6 6 H 1.48502 * 109.46993 * 59.99808 * 3 2 1 7 7 C 1.38814 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00088 * 163.07545 * 7 2 1 9 9 N 1.36935 * 119.99745 * 343.07824 * 7 2 1 10 10 C 1.46929 * 120.63370 * 331.82999 * 9 7 2 11 11 C 1.53183 * 108.77795 * 233.58763 * 10 9 7 12 12 C 1.53039 * 109.31528 * 305.36545 * 11 10 9 13 13 C 1.53041 * 109.52609 * 61.37195 * 12 11 10 14 14 H 1.09001 * 109.49937 * 58.57847 * 13 12 11 15 15 N 1.46502 * 109.49999 * 178.67841 * 13 12 11 16 16 C 1.34778 * 120.00170 * 205.00190 * 15 13 12 17 17 O 1.21276 * 120.00011 * 359.97438 * 16 15 13 18 18 C 1.50701 * 119.99927 * 180.02562 * 16 15 13 19 19 H 1.08992 * 110.26275 * 60.59394 * 18 16 15 20 20 C 1.54338 * 110.29401 * 182.75664 * 18 16 15 21 21 C 1.54367 * 102.38709 * 145.27457 * 20 18 16 22 22 C 1.51224 * 105.12333 * 333.70451 * 21 20 18 23 23 C 1.38740 * 130.69780 * 197.14855 * 22 21 20 24 24 C 1.38577 * 118.55515 * 179.97438 * 23 22 21 25 25 C 1.38222 * 118.99185 * 359.97438 * 24 23 22 26 26 N 1.31686 * 120.80173 * 0.02562 * 25 24 23 27 27 C 1.32290 * 122.02980 * 0.02562 * 26 25 24 28 28 C 1.46928 * 120.63092 * 151.81211 * 9 7 2 29 29 H 0.97004 * 120.00436 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.58075 * 113.80125 * 10 9 7 31 31 H 1.09002 * 109.58293 * 353.37826 * 10 9 7 32 32 H 1.09002 * 109.49989 * 185.41061 * 11 10 9 33 33 H 1.09002 * 109.49621 * 65.31834 * 11 10 9 34 34 H 1.09000 * 109.46313 * 181.38088 * 12 11 10 35 35 H 1.09000 * 109.45939 * 301.35793 * 12 11 10 36 36 H 0.96998 * 120.00051 * 24.99346 * 15 13 12 37 37 H 1.08994 * 110.82090 * 263.49624 * 20 18 16 38 38 H 1.09000 * 110.82268 * 27.05404 * 20 18 16 39 39 H 1.09007 * 110.31113 * 214.79605 * 21 20 18 40 40 H 1.08994 * 110.39873 * 92.66711 * 21 20 18 41 41 H 1.08002 * 120.71771 * 359.95029 * 23 22 21 42 42 H 1.08001 * 120.50230 * 179.97438 * 24 23 22 43 43 H 1.08004 * 119.59486 * 180.02562 * 25 24 23 44 44 H 1.09003 * 109.58888 * 246.19990 * 28 9 7 45 45 H 1.09004 * 109.58643 * 6.48127 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3462 10 6 0.2262 -2.3399 1.2681 11 6 0.4976 -3.3191 2.4145 12 6 0.8120 -4.7008 1.8363 13 6 2.0675 -4.6171 0.9651 14 1 2.9024 -4.2532 1.5640 15 7 2.3860 -5.9461 0.4374 16 6 3.6523 -6.2461 0.0864 17 8 4.5279 -5.4158 0.2070 18 6 3.9798 -7.6131 -0.4569 19 1 3.4198 -7.7992 -1.3733 20 6 5.4958 -7.7358 -0.7191 21 6 5.7729 -9.2146 -0.3738 22 6 4.6986 -9.5958 0.6200 23 6 4.6200 -10.6638 1.5020 24 6 3.5015 -10.7721 2.3130 25 6 2.5081 -9.8161 2.2154 26 7 2.6164 -8.8153 1.3664 27 6 3.6673 -8.6774 0.5748 28 6 1.8137 -3.6529 -0.1980 29 1 -0.4851 0.8400 0.0004 30 1 -0.6770 -2.6405 0.7370 31 1 0.0994 -1.3342 1.6688 32 1 -0.3829 -3.3840 3.0537 33 1 1.3474 -2.9676 2.9996 34 1 0.9815 -5.4052 2.6506 35 1 -0.0281 -5.0408 1.2308 36 1 1.6857 -6.6102 0.3407 37 1 5.7258 -7.5325 -1.7649 38 1 6.0576 -7.0726 -0.0615 39 1 6.7598 -9.3194 0.0771 40 1 5.6984 -9.8339 -1.2677 41 1 5.4130 -11.3950 1.5551 42 1 3.4076 -11.5912 3.0107 43 1 1.6324 -9.8908 2.8431 44 1 1.0399 -4.0605 -0.8486 45 1 2.7330 -3.5130 -0.7667 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008338580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:38 Heat of formation + Delta-G solvation = -6.948266 kcal Electronic energy + Delta-G solvation = -26443.301495 eV Core-core repulsion = 22845.684705 eV Total energy + Delta-G solvation = -3597.616790 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.03059 -40.60057 -39.03177 -36.96616 -35.89828 -34.23944 -33.54099 -32.36401 -30.76996 -30.22220 -28.83741 -27.27448 -24.43331 -24.30816 -23.88168 -22.96786 -22.14241 -21.28468 -20.67853 -18.73850 -18.41894 -17.71078 -17.37667 -17.08856 -16.64841 -16.23347 -15.84855 -15.68375 -15.55818 -15.14427 -14.77220 -14.68060 -14.46075 -14.21184 -14.15558 -13.99754 -13.64271 -13.46601 -13.05590 -12.95136 -12.78911 -12.60802 -12.54502 -12.52384 -12.12905 -12.00832 -11.98488 -11.79120 -11.60706 -11.32683 -10.98075 -10.64016 -10.61468 -10.24710 -10.06649 -9.66452 -8.71103 -7.91983 -5.38338 0.12097 0.36880 1.42749 1.44085 1.56197 1.60275 2.17506 2.49880 2.83956 2.95319 3.21979 3.35227 3.63575 3.76838 3.85294 3.91191 3.98408 4.09071 4.12169 4.21248 4.24723 4.31973 4.44798 4.47768 4.56803 4.60213 4.65860 4.77307 4.84313 4.89557 4.98555 4.99858 5.07528 5.09542 5.15229 5.23318 5.24436 5.26391 5.32025 5.46981 5.57729 5.60827 5.73230 5.79054 6.35074 6.61214 7.02488 7.10837 7.29712 7.79824 8.30957 9.13981 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023232 B = 0.003173 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.959957 B = 8821.192975 C = 9718.321818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.044 4.044 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.283 1.283 7 C -0.269 4.269 8 H 0.053 0.947 9 N -0.607 5.607 10 C 0.173 3.827 11 C -0.129 4.129 12 C -0.101 4.101 13 C 0.143 3.857 14 H 0.051 0.949 15 N -0.698 5.698 16 C 0.516 3.484 17 O -0.584 6.584 18 C -0.055 4.055 19 H 0.137 0.863 20 C -0.104 4.104 21 C -0.070 4.070 22 C -0.148 4.148 23 C -0.069 4.069 24 C -0.163 4.163 25 C 0.087 3.913 26 N -0.500 5.500 27 C 0.095 3.905 28 C 0.148 3.852 29 H 0.253 0.747 30 H 0.005 0.995 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.414 0.586 37 H 0.104 0.896 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.163 0.837 42 H 0.169 0.831 43 H 0.178 0.822 44 H 0.020 0.980 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.760 -27.404 3.327 28.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.240 4.240 3 Si 0.795 3.205 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.399 4.399 8 H 0.071 0.929 9 N -0.331 5.331 10 C 0.048 3.952 11 C -0.168 4.168 12 C -0.139 4.139 13 C 0.036 3.964 14 H 0.070 0.930 15 N -0.349 5.349 16 C 0.303 3.697 17 O -0.464 6.464 18 C -0.077 4.077 19 H 0.155 0.845 20 C -0.142 4.142 21 C -0.107 4.107 22 C -0.150 4.150 23 C -0.095 4.095 24 C -0.182 4.182 25 C -0.071 4.071 26 N -0.209 5.209 27 C -0.043 4.043 28 C 0.021 3.979 29 H 0.062 0.938 30 H 0.023 0.977 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.251 0.749 37 H 0.122 0.878 38 H 0.085 0.915 39 H 0.114 0.886 40 H 0.128 0.872 41 H 0.180 0.820 42 H 0.187 0.813 43 H 0.195 0.805 44 H 0.038 0.962 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.586 -26.061 3.365 27.090 hybrid contribution 0.398 0.559 -0.117 0.696 sum 6.984 -25.502 3.248 26.640 Atomic orbital electron populations 1.70174 1.06410 1.25999 1.54875 1.25756 0.96160 1.01269 1.00782 0.85217 0.78313 0.79724 0.77250 1.19873 1.21299 1.20931 1.19433 0.92447 0.86289 1.41750 0.92943 1.44238 1.36086 1.01672 1.51136 1.20703 0.87564 0.98011 0.88911 1.22022 1.01294 0.95163 0.98357 1.21558 0.95939 0.97531 0.98878 1.21219 0.97609 0.82274 0.95265 0.93027 1.45910 1.09921 1.14705 1.64336 1.20898 0.82238 0.89630 0.76976 1.90693 1.48070 1.51602 1.56059 1.20976 1.00817 0.87966 0.97953 0.84520 1.22298 0.90790 0.97067 1.04037 1.21031 0.97119 0.94801 0.97763 1.21710 0.98023 0.96314 0.98988 1.21482 0.98729 0.96437 0.92853 1.22483 0.94160 1.01094 1.00491 1.23120 0.99791 0.89199 0.94942 1.66713 1.24899 1.23652 1.05626 1.21408 0.91454 0.95781 0.95614 1.21189 0.96415 0.86454 0.93886 0.93798 0.97660 0.92569 0.89677 0.93535 0.90276 0.90882 0.74945 0.87779 0.91496 0.88650 0.87206 0.81976 0.81309 0.80515 0.96231 0.95059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 11.20 21.65 0.24 -56.14 16 2 C -0.04 -2.57 4.92 84.86 0.42 -2.15 16 3 Si 0.97 47.21 29.59 68.60 2.03 49.24 16 4 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.27 -16.14 9.58 84.03 0.81 -15.33 16 8 H 0.05 3.21 7.89 -2.91 -0.02 3.19 16 9 N -0.61 -33.16 2.99 -699.09 -2.09 -35.25 16 10 C 0.17 8.67 5.30 86.36 0.46 9.13 16 11 C -0.13 -4.98 6.08 30.67 0.19 -4.79 16 12 C -0.10 -3.41 5.35 30.62 0.16 -3.24 16 13 C 0.14 5.61 2.60 45.07 0.12 5.73 16 14 H 0.05 2.37 7.58 -2.39 -0.02 2.36 16 15 N -0.70 -22.63 4.85 -442.16 -2.14 -24.78 16 16 C 0.52 17.24 7.14 87.66 0.63 17.87 16 17 O -0.58 -24.87 15.18 -3.02 -0.05 -24.92 16 18 C -0.06 -1.29 3.26 -11.58 -0.04 -1.33 16 19 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 20 C -0.10 -2.04 6.32 31.51 0.20 -1.84 16 21 C -0.07 -0.93 6.77 30.48 0.21 -0.72 16 22 C -0.15 -2.54 6.16 -19.59 -0.12 -2.66 16 23 C -0.07 -0.88 10.17 22.47 0.23 -0.65 16 24 C -0.16 -1.94 10.12 22.35 0.23 -1.72 16 25 C 0.09 1.43 11.18 84.71 0.95 2.38 16 26 N -0.50 -11.32 9.59 -182.98 -1.75 -13.08 16 27 C 0.09 2.11 6.57 42.72 0.28 2.39 16 28 C 0.15 6.99 6.09 86.36 0.53 7.51 16 29 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 30 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 3.15 6.06 -2.39 -0.01 3.14 16 32 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.41 11.37 8.00 -92.71 -0.74 10.63 16 37 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 1.71 7.06 -2.39 -0.02 1.70 16 39 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 40 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 42 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16 43 H 0.18 1.99 8.06 -2.91 -0.02 1.96 16 44 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 45 H 0.03 1.60 7.93 -2.39 -0.02 1.58 16 Total: -1.00 -77.53 360.76 1.72 -75.81 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.25 Total: 18.55 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 5.23 Total: 10.55 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -5.75 Total: -129.24 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.05 Total: -24.92 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -77.53 1.72 -75.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008338580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.860 kcal (2) G-P(sol) polarization free energy of solvation -77.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds