Wall clock time and date at job start Tue Mar 31 2020 11:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99983 * 2 1 4 4 H 1.48506 * 109.46841 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47215 * 299.99572 * 3 2 1 6 6 H 1.48503 * 109.47248 * 60.00110 * 3 2 1 7 7 C 1.38814 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00505 * 197.38351 * 7 2 1 9 9 N 1.36943 * 119.99361 * 17.38007 * 7 2 1 10 10 C 1.46925 * 120.62947 * 207.67892 * 9 7 2 11 11 C 1.53189 * 108.77755 * 233.58860 * 10 9 7 12 12 C 1.53038 * 109.31305 * 305.36920 * 11 10 9 13 13 C 1.53041 * 109.54157 * 61.35981 * 12 11 10 14 14 H 1.08995 * 109.49371 * 58.62470 * 13 12 11 15 15 N 1.46498 * 109.49594 * 178.68652 * 13 12 11 16 16 C 1.34782 * 119.99602 * 205.00059 * 15 13 12 17 17 O 1.21276 * 119.99913 * 0.02562 * 16 15 13 18 18 C 1.50699 * 119.99648 * 180.02562 * 16 15 13 19 19 H 1.09002 * 110.26505 * 300.70181 * 18 16 15 20 20 C 1.54339 * 110.29418 * 178.64722 * 18 16 15 21 21 C 1.54366 * 102.38838 * 214.62660 * 20 18 16 22 22 C 1.51225 * 105.11929 * 26.29916 * 21 20 18 23 23 C 1.38739 * 130.69527 * 162.85018 * 22 21 20 24 24 C 1.39162 * 118.40382 * 180.09534 * 23 22 21 25 25 C 1.38227 * 119.05137 * 359.95334 * 24 23 22 26 26 N 1.31686 * 120.80082 * 0.02562 * 25 24 23 27 27 C 1.32305 * 122.02807 * 0.02562 * 26 25 24 28 28 C 1.46928 * 120.63179 * 27.65962 * 9 7 2 29 29 H 0.97002 * 120.00154 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.59027 * 113.80052 * 10 9 7 31 31 H 1.09000 * 109.58834 * 353.37818 * 10 9 7 32 32 H 1.09002 * 109.49945 * 185.40987 * 11 10 9 33 33 H 1.09003 * 109.52114 * 65.33217 * 11 10 9 34 34 H 1.09001 * 109.45658 * 301.34222 * 12 11 10 35 35 H 1.08994 * 109.45263 * 181.38139 * 12 11 10 36 36 H 0.96998 * 120.00277 * 24.99955 * 15 13 12 37 37 H 1.08997 * 110.82094 * 332.85293 * 20 18 16 38 38 H 1.09000 * 110.82174 * 96.39913 * 20 18 16 39 39 H 1.09005 * 110.31136 * 145.20970 * 21 20 18 40 40 H 1.08994 * 110.31498 * 267.28516 * 21 20 18 41 41 H 1.07998 * 120.72156 * 0.02562 * 23 22 21 42 42 H 1.08000 * 120.44396 * 179.97438 * 24 23 22 43 43 H 1.07999 * 119.60222 * 180.02562 * 25 24 23 44 44 H 1.08994 * 109.58332 * 6.62403 * 28 9 7 45 45 H 1.09002 * 109.58390 * 246.19759 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2234 0.2800 9 7 1.3724 -2.3611 -0.3532 10 6 1.8192 -3.6547 0.1813 11 6 2.0743 -4.6101 -0.9886 12 6 0.8188 -4.6900 -1.8599 13 6 0.5009 -3.3048 -2.4279 14 1 1.3493 -2.9475 -3.0114 15 7 -0.6829 -3.3885 -3.2869 16 6 -0.8690 -2.4831 -4.2678 17 8 -0.0563 -1.5995 -4.4395 18 6 -2.0870 -2.5688 -5.1510 19 1 -2.1107 -3.5274 -5.6694 20 6 -2.0924 -1.4092 -6.1695 21 6 -3.5976 -1.0950 -6.3057 22 6 -4.2128 -1.5371 -4.9969 23 6 -5.4373 -1.2276 -4.4227 24 6 -5.7484 -1.7852 -3.1862 25 6 -4.8325 -2.6231 -2.5782 26 7 -3.6800 -2.8940 -3.1547 27 6 -3.3456 -2.3839 -4.3287 28 6 0.2279 -2.3347 -1.2742 29 1 -0.4850 0.8400 -0.0004 30 1 1.0469 -4.0687 0.8294 31 1 2.7399 -3.5174 0.7484 32 1 2.3136 -5.6013 -0.6034 33 1 2.9084 -4.2407 -1.5853 34 1 -0.0204 -5.0364 -1.2566 35 1 0.9894 -5.3881 -2.6794 36 1 -1.3327 -4.0955 -3.1497 37 1 -1.5505 -0.5479 -5.7788 38 1 -1.6755 -1.7301 -7.1242 39 1 -3.7491 -0.0256 -6.4530 40 1 -4.0274 -1.6552 -7.1360 41 1 -6.1309 -0.5687 -4.9239 42 1 -6.6922 -1.5662 -2.7091 43 1 -5.0650 -3.0610 -1.6187 44 1 0.0987 -1.3264 -1.6675 45 1 -0.6743 -2.6411 -0.7448 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008338599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:47 Heat of formation + Delta-G solvation = 16.017083 kcal Electronic energy + Delta-G solvation = -27070.670356 eV Core-core repulsion = 23474.049418 eV Total energy + Delta-G solvation = -3596.620938 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.93883 -39.10970 -37.32695 -35.86761 -33.98034 -32.81010 -32.43175 -29.98855 -29.45837 -29.16122 -27.65868 -25.18021 -23.52146 -22.86058 -22.07123 -21.78513 -20.88918 -19.65961 -19.10866 -17.12588 -16.79906 -16.59804 -16.30494 -15.47392 -15.12383 -14.87027 -14.49869 -14.02500 -13.86035 -13.55826 -13.48055 -13.44718 -13.09103 -12.99170 -12.62560 -12.32367 -12.24263 -11.97389 -11.89719 -11.70585 -11.46822 -11.07104 -10.95111 -10.68421 -10.62636 -10.38619 -10.16136 -9.93614 -9.85889 -9.76354 -9.45505 -9.37982 -9.20864 -8.68911 -8.36821 -8.33170 -6.56947 -5.67512 -3.10661 1.04616 1.25746 3.06195 3.46056 3.53828 3.55494 3.62471 3.81456 3.97145 4.30874 4.59862 4.70065 4.80328 4.87469 4.98670 5.12513 5.25901 5.34397 5.42381 5.45480 5.50554 5.52970 5.63856 5.69581 5.72270 5.74967 5.84101 5.91601 6.08343 6.15863 6.18374 6.23891 6.25558 6.43149 6.50472 6.61986 6.65431 6.80298 6.86803 7.04550 7.12655 7.43619 7.84344 7.92468 7.99713 8.12233 8.56025 8.79928 9.30993 9.95510 10.50598 11.39779 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.004641 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.069970 B = 6031.647428 C = 6713.963808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.006 3.994 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.255 4.255 8 H 0.066 0.934 9 N -0.590 5.590 10 C 0.143 3.857 11 C -0.130 4.130 12 C -0.115 4.115 13 C 0.117 3.883 14 H 0.079 0.921 15 N -0.707 5.707 16 C 0.521 3.479 17 O -0.534 6.534 18 C -0.061 4.061 19 H 0.115 0.885 20 C -0.104 4.104 21 C -0.078 4.078 22 C -0.145 4.145 23 C -0.066 4.066 24 C -0.173 4.173 25 C 0.108 3.892 26 N -0.466 5.466 27 C 0.128 3.872 28 C 0.171 3.829 29 H 0.251 0.749 30 H 0.017 0.983 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.049 0.951 36 H 0.398 0.602 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.159 0.841 44 H 0.092 0.908 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.538 -8.303 -11.761 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.193 4.193 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.016 3.984 11 C -0.170 4.170 12 C -0.153 4.153 13 C 0.012 3.988 14 H 0.097 0.903 15 N -0.356 5.356 16 C 0.305 3.695 17 O -0.411 6.411 18 C -0.083 4.083 19 H 0.132 0.868 20 C -0.142 4.142 21 C -0.116 4.116 22 C -0.147 4.147 23 C -0.092 4.092 24 C -0.193 4.193 25 C -0.049 4.049 26 N -0.174 5.174 27 C -0.010 4.010 28 C 0.044 3.956 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.232 0.768 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.149 0.851 42 H 0.154 0.846 43 H 0.176 0.824 44 H 0.110 0.890 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -10.445 -8.078 -11.406 17.449 hybrid contribution -0.769 1.061 -0.159 1.320 sum -11.214 -7.017 -11.566 17.571 Atomic orbital electron populations 1.70045 1.05287 1.25209 1.53507 1.25025 0.95236 0.98407 1.00673 0.86267 0.79450 0.84170 0.77159 1.20189 1.21519 1.21827 1.19184 0.92702 0.84871 1.41670 0.91622 1.44004 1.36088 1.01550 1.49616 1.20943 0.97603 0.86956 0.92871 1.21997 0.97011 0.99236 0.98787 1.21664 0.98822 0.96143 0.98711 1.21925 0.87065 0.96752 0.93058 0.90262 1.45973 1.25780 1.31082 1.32770 1.19978 0.86430 0.81993 0.81125 1.90724 1.45399 1.34019 1.70935 1.20907 0.90032 1.02293 0.95041 0.86758 1.22297 0.95509 0.98240 0.98156 1.20997 0.94939 1.02017 0.93602 1.21466 0.95388 0.99330 0.98528 1.21172 0.95286 0.97954 0.94820 1.22209 1.01471 0.99382 0.96196 1.22636 0.88179 0.94977 0.99064 1.66793 1.18246 1.23566 1.08824 1.21428 0.94957 0.93834 0.90793 1.21046 0.88517 0.98839 0.87218 0.93885 0.96484 0.92735 0.92727 0.92195 0.92237 0.93220 0.76813 0.88510 0.89571 0.90083 0.89856 0.85051 0.84608 0.82414 0.88963 0.96452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 11.19 55.49 0.62 -27.09 16 2 C 0.01 0.16 4.91 -17.43 -0.09 0.08 16 3 Si 0.90 23.16 29.59 -169.99 -5.03 18.13 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.57 7.11 56.52 0.40 -7.16 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 7 C -0.25 -7.40 9.59 -15.06 -0.14 -7.55 16 8 H 0.07 1.86 7.89 -52.49 -0.41 1.45 16 9 N -0.59 -15.64 3.00 -172.32 -0.52 -16.15 16 10 C 0.14 3.10 6.52 -3.71 -0.02 3.07 16 11 C -0.13 -2.32 6.08 -26.61 -0.16 -2.49 16 12 C -0.12 -1.99 5.35 -26.69 -0.14 -2.14 16 13 C 0.12 2.45 2.61 -67.81 -0.18 2.27 16 14 H 0.08 1.85 7.58 -51.93 -0.39 1.46 16 15 N -0.71 -12.77 4.87 -53.69 -0.26 -13.03 16 16 C 0.52 9.69 7.13 -10.98 -0.08 9.62 16 17 O -0.53 -12.24 15.16 5.56 0.08 -12.15 16 18 C -0.06 -0.84 3.26 -91.84 -0.30 -1.14 16 19 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 20 C -0.10 -1.26 6.33 -25.31 -0.16 -1.42 16 21 C -0.08 -0.78 6.77 -26.91 -0.18 -0.96 16 22 C -0.15 -1.81 6.16 -104.12 -0.64 -2.45 16 23 C -0.07 -0.73 10.20 -39.05 -0.40 -1.12 16 24 C -0.17 -1.88 10.14 -39.24 -0.40 -2.27 16 25 C 0.11 1.40 11.18 -17.62 -0.20 1.21 16 26 N -0.47 -7.18 9.72 -9.13 -0.09 -7.27 16 27 C 0.13 1.88 6.60 -81.95 -0.54 1.34 16 28 C 0.17 4.41 4.89 -3.71 -0.02 4.39 16 29 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 1.15 7.93 -51.93 -0.41 0.74 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.40 6.28 8.14 -40.82 -0.33 5.94 16 37 H 0.10 1.47 7.04 -51.93 -0.37 1.10 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.09 2.81 6.03 -51.93 -0.31 2.49 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 361.07 15.07 5.44 5.44 Total: -1.00 -35.47 361.07 -10.26 -45.73 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -6.86 Total: 5.97 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -3.65 Total: 0.42 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -0.25 Total: -63.54 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.03 Total: 18.13 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.47 -10.26 -45.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008338599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.750 kcal (2) G-P(sol) polarization free energy of solvation -35.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds