Wall clock time and date at job start Tue Mar 31 2020 11:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99983 * 2 1 4 4 H 1.48506 * 109.46841 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47215 * 299.99572 * 3 2 1 6 6 H 1.48503 * 109.47248 * 60.00110 * 3 2 1 7 7 C 1.38814 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00505 * 197.38351 * 7 2 1 9 9 N 1.36943 * 119.99361 * 17.38007 * 7 2 1 10 10 C 1.46925 * 120.62947 * 207.67892 * 9 7 2 11 11 C 1.53189 * 108.77755 * 233.58860 * 10 9 7 12 12 C 1.53038 * 109.31305 * 305.36920 * 11 10 9 13 13 C 1.53041 * 109.54157 * 61.35981 * 12 11 10 14 14 H 1.08995 * 109.49371 * 58.62470 * 13 12 11 15 15 N 1.46498 * 109.49594 * 178.68652 * 13 12 11 16 16 C 1.34782 * 119.99602 * 205.00059 * 15 13 12 17 17 O 1.21276 * 119.99913 * 0.02562 * 16 15 13 18 18 C 1.50699 * 119.99648 * 180.02562 * 16 15 13 19 19 H 1.09002 * 110.26505 * 300.70181 * 18 16 15 20 20 C 1.54339 * 110.29418 * 178.64722 * 18 16 15 21 21 C 1.54366 * 102.38838 * 214.62660 * 20 18 16 22 22 C 1.51225 * 105.11929 * 26.29916 * 21 20 18 23 23 C 1.38739 * 130.69527 * 162.85018 * 22 21 20 24 24 C 1.39162 * 118.40382 * 180.09534 * 23 22 21 25 25 C 1.38227 * 119.05137 * 359.95334 * 24 23 22 26 26 N 1.31686 * 120.80082 * 0.02562 * 25 24 23 27 27 C 1.32305 * 122.02807 * 0.02562 * 26 25 24 28 28 C 1.46928 * 120.63179 * 27.65962 * 9 7 2 29 29 H 0.97002 * 120.00154 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.59027 * 113.80052 * 10 9 7 31 31 H 1.09000 * 109.58834 * 353.37818 * 10 9 7 32 32 H 1.09002 * 109.49945 * 185.40987 * 11 10 9 33 33 H 1.09003 * 109.52114 * 65.33217 * 11 10 9 34 34 H 1.09001 * 109.45658 * 301.34222 * 12 11 10 35 35 H 1.08994 * 109.45263 * 181.38139 * 12 11 10 36 36 H 0.96998 * 120.00277 * 24.99955 * 15 13 12 37 37 H 1.08997 * 110.82094 * 332.85293 * 20 18 16 38 38 H 1.09000 * 110.82174 * 96.39913 * 20 18 16 39 39 H 1.09005 * 110.31136 * 145.20970 * 21 20 18 40 40 H 1.08994 * 110.31498 * 267.28516 * 21 20 18 41 41 H 1.07998 * 120.72156 * 0.02562 * 23 22 21 42 42 H 1.08000 * 120.44396 * 179.97438 * 24 23 22 43 43 H 1.07999 * 119.60222 * 180.02562 * 25 24 23 44 44 H 1.08994 * 109.58332 * 6.62403 * 28 9 7 45 45 H 1.09002 * 109.58390 * 246.19759 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2234 0.2800 9 7 1.3724 -2.3611 -0.3532 10 6 1.8192 -3.6547 0.1813 11 6 2.0743 -4.6101 -0.9886 12 6 0.8188 -4.6900 -1.8599 13 6 0.5009 -3.3048 -2.4279 14 1 1.3493 -2.9475 -3.0114 15 7 -0.6829 -3.3885 -3.2869 16 6 -0.8690 -2.4831 -4.2678 17 8 -0.0563 -1.5995 -4.4395 18 6 -2.0870 -2.5688 -5.1510 19 1 -2.1107 -3.5274 -5.6694 20 6 -2.0924 -1.4092 -6.1695 21 6 -3.5976 -1.0950 -6.3057 22 6 -4.2128 -1.5371 -4.9969 23 6 -5.4373 -1.2276 -4.4227 24 6 -5.7484 -1.7852 -3.1862 25 6 -4.8325 -2.6231 -2.5782 26 7 -3.6800 -2.8940 -3.1547 27 6 -3.3456 -2.3839 -4.3287 28 6 0.2279 -2.3347 -1.2742 29 1 -0.4850 0.8400 -0.0004 30 1 1.0469 -4.0687 0.8294 31 1 2.7399 -3.5174 0.7484 32 1 2.3136 -5.6013 -0.6034 33 1 2.9084 -4.2407 -1.5853 34 1 -0.0204 -5.0364 -1.2566 35 1 0.9894 -5.3881 -2.6794 36 1 -1.3327 -4.0955 -3.1497 37 1 -1.5505 -0.5479 -5.7788 38 1 -1.6755 -1.7301 -7.1242 39 1 -3.7491 -0.0256 -6.4530 40 1 -4.0274 -1.6552 -7.1360 41 1 -6.1309 -0.5687 -4.9239 42 1 -6.6922 -1.5662 -2.7091 43 1 -5.0650 -3.0610 -1.6187 44 1 0.0987 -1.3264 -1.6675 45 1 -0.6743 -2.6411 -0.7448 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008338599.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:46 Heat of formation + Delta-G solvation = -8.005249 kcal Electronic energy + Delta-G solvation = -27071.712042 eV Core-core repulsion = 23474.049418 eV Total energy + Delta-G solvation = -3597.662624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.99224 -40.55190 -39.00188 -36.94784 -35.77879 -34.47950 -33.59767 -31.94647 -30.86780 -30.24037 -28.88090 -27.26759 -24.45295 -24.29104 -23.90871 -22.94534 -22.10275 -21.24988 -20.64246 -18.79044 -18.40656 -17.71131 -17.36875 -17.13255 -16.63938 -16.19711 -15.91118 -15.60696 -15.43856 -15.19997 -14.78938 -14.65699 -14.45212 -14.18682 -14.09874 -13.99544 -13.67013 -13.54457 -12.99050 -12.96121 -12.71442 -12.60811 -12.53525 -12.47757 -12.26584 -12.06814 -12.00818 -11.72373 -11.62337 -11.28277 -10.95293 -10.60861 -10.59691 -10.24815 -10.02982 -9.66386 -8.72567 -7.91529 -5.37977 0.10643 0.35826 1.36475 1.40992 1.50192 1.63105 2.24865 2.46456 2.81141 2.97941 3.24079 3.36015 3.65113 3.79057 3.88732 3.94194 4.00815 4.08929 4.12212 4.18923 4.25267 4.33037 4.45119 4.47863 4.58913 4.62292 4.64599 4.79511 4.82808 4.90739 4.97565 5.06403 5.06525 5.17777 5.20086 5.21388 5.25570 5.29369 5.31843 5.48958 5.52192 5.58633 5.77630 5.78080 6.32574 6.65405 7.02787 7.08134 7.35029 7.82024 8.31744 9.12709 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012353 B = 0.004641 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.069970 B = 6031.647428 C = 6713.963808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.053 4.053 3 Si 0.962 3.038 4 H -0.260 1.260 5 H -0.299 1.299 6 H -0.284 1.284 7 C -0.264 4.264 8 H 0.071 0.929 9 N -0.611 5.611 10 C 0.135 3.865 11 C -0.120 4.120 12 C -0.106 4.106 13 C 0.130 3.870 14 H 0.051 0.949 15 N -0.698 5.698 16 C 0.513 3.487 17 O -0.586 6.586 18 C -0.053 4.053 19 H 0.148 0.852 20 C -0.104 4.104 21 C -0.068 4.068 22 C -0.151 4.151 23 C -0.070 4.070 24 C -0.165 4.165 25 C 0.082 3.918 26 N -0.500 5.500 27 C 0.093 3.907 28 C 0.189 3.811 29 H 0.244 0.756 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.411 0.589 37 H 0.057 0.943 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.118 0.882 41 H 0.166 0.834 42 H 0.169 0.831 43 H 0.170 0.830 44 H 0.038 0.962 45 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.470 -9.787 -13.153 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.249 4.249 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.227 1.227 6 H -0.211 1.211 7 C -0.394 4.394 8 H 0.088 0.912 9 N -0.335 5.335 10 C 0.010 3.990 11 C -0.159 4.159 12 C -0.144 4.144 13 C 0.024 3.976 14 H 0.070 0.930 15 N -0.348 5.348 16 C 0.299 3.701 17 O -0.467 6.467 18 C -0.074 4.074 19 H 0.165 0.835 20 C -0.142 4.142 21 C -0.105 4.105 22 C -0.153 4.153 23 C -0.096 4.096 24 C -0.184 4.184 25 C -0.075 4.075 26 N -0.209 5.209 27 C -0.045 4.045 28 C 0.062 3.938 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.248 0.752 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.136 0.864 41 H 0.183 0.817 42 H 0.186 0.814 43 H 0.187 0.813 44 H 0.056 0.944 45 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges -11.378 -9.622 -12.789 19.637 hybrid contribution -0.519 1.503 0.346 1.628 sum -11.897 -8.119 -12.443 19.034 Atomic orbital electron populations 1.70220 1.06806 1.25307 1.55266 1.25836 0.96038 1.01733 1.01262 0.85276 0.79061 0.80023 0.76608 1.18411 1.22667 1.21096 1.19567 0.93102 0.86192 1.40563 0.91171 1.44299 1.35940 1.02784 1.50438 1.21184 0.97495 0.85626 0.94672 1.21897 0.96876 1.00174 0.97003 1.21632 0.98974 0.93992 0.99821 1.21489 0.87125 0.97883 0.91114 0.93048 1.45881 1.25284 1.31450 1.32175 1.20939 0.87194 0.80710 0.81241 1.90693 1.47640 1.35885 1.72444 1.20997 0.87249 1.04689 0.94501 0.83491 1.22319 0.97148 0.96162 0.98595 1.21034 0.92829 1.03158 0.93492 1.21837 0.95724 0.98422 0.99341 1.21629 0.95279 0.97866 0.94790 1.22590 1.02040 0.97733 0.96052 1.23026 0.88334 0.96215 0.99934 1.66702 1.19641 1.24934 1.09647 1.21601 0.95803 0.95663 0.91411 1.20654 0.87636 0.97184 0.88359 0.94671 0.96340 0.92408 0.88301 0.92810 0.91318 0.89518 0.75238 0.92434 0.86773 0.89038 0.86409 0.81658 0.81370 0.81294 0.94357 0.99149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.53 11.19 21.65 0.24 -60.29 16 2 C -0.05 -3.27 4.91 84.86 0.42 -2.85 16 3 Si 0.96 49.27 29.59 68.60 2.03 51.30 16 4 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 5 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 6 H -0.28 -14.12 7.11 99.48 0.71 -13.42 16 7 C -0.26 -15.80 9.59 84.03 0.81 -14.99 16 8 H 0.07 4.04 7.89 -2.91 -0.02 4.02 16 9 N -0.61 -33.39 3.00 -699.11 -2.09 -35.48 16 10 C 0.14 5.80 6.52 86.36 0.56 6.36 16 11 C -0.12 -4.00 6.08 30.67 0.19 -3.82 16 12 C -0.11 -3.47 5.35 30.62 0.16 -3.31 16 13 C 0.13 5.57 2.61 45.07 0.12 5.69 16 14 H 0.05 2.50 7.58 -2.39 -0.02 2.48 16 15 N -0.70 -25.84 4.87 -442.18 -2.15 -27.99 16 16 C 0.51 19.83 7.13 87.66 0.63 20.45 16 17 O -0.59 -28.61 15.16 -3.02 -0.05 -28.66 16 18 C -0.05 -1.45 3.26 -11.58 -0.04 -1.49 16 19 H 0.15 2.95 8.14 -2.39 -0.02 2.93 16 20 C -0.10 -2.47 6.33 31.51 0.20 -2.27 16 21 C -0.07 -1.20 6.77 30.48 0.21 -1.00 16 22 C -0.15 -3.54 6.16 -19.54 -0.12 -3.66 16 23 C -0.07 -1.36 10.20 22.61 0.23 -1.13 16 24 C -0.16 -3.28 10.14 22.49 0.23 -3.05 16 25 C 0.08 2.10 11.18 84.71 0.95 3.05 16 26 N -0.50 -15.65 9.72 -182.80 -1.78 -17.43 16 27 C 0.09 2.71 6.60 42.77 0.28 2.99 16 28 C 0.19 10.27 4.89 86.36 0.42 10.69 16 29 H 0.24 15.50 8.31 -92.71 -0.77 14.73 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 32 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.41 12.98 8.14 -92.71 -0.75 12.23 16 37 H 0.06 1.83 7.04 -2.39 -0.02 1.81 16 38 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 42 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 44 H 0.04 2.49 6.03 -2.39 -0.01 2.47 16 45 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 Total: -1.00 -84.32 361.07 1.68 -82.64 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 0.24 Total: 24.25 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 5.24 Total: 11.66 kcal Atomic # 7 Polarization: -135.41 SS G_CDS: -5.78 Total: -141.19 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.05 Total: -28.66 kcal Atomic # 14 Polarization: 49.27 SS G_CDS: 2.03 Total: 51.30 kcal Total: -84.32 1.68 -82.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008338599.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.636 kcal (2) G-P(sol) polarization free energy of solvation -84.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds